- MC-Fold CPU time is currently limited to 12 hours per job.
- MC-Fold sequence length is limited to 150 nucleotides.
- Linux executable version without limits available here.
Convert all unpaired nucleotides to unconstrained
High reactivity mask (+8 kcal/mol penalty)
Medium reactivity mask (+4 kcal/mol penalty)
Low reactivity mask (+2 kcal/mol penalty)