MOLECULE: [GraphModel] [Vertices] 0 18R:A 0 1 19R:G 0 2 20R:U 0 3 4R:A 0 4 5R:U 0 5 6R:A 0 6 7R:C 0 7 8R:U 0 [Edges] 0 {4R:A -> 5R:U: adjacent_5p upward } 0 1 {5R:U -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {20R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:U -> 6R:A: adjacent_5p } 0 5 {6R:A -> 5R:U: adjacent_3p } 0 6 {6R:A -> 7R:C: adjacent_5p upward } 0 7 {7R:C -> 6R:A: adjacent_3p downward } 0 8 {7R:C -> 8R:U: adjacent_5p } 0 9 {8R:U -> 7R:C: adjacent_3p } 0 10 {7R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {19R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {8R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {18R:A -> 8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {18R:A -> 19R:G: adjacent_5p upward } 0 15 {19R:G -> 18R:A: adjacent_3p downward } 0 16 {19R:G -> 20R:U: adjacent_5p } 0 17 {20R:U -> 19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 19R:G 0 1 20R:U 0 2 21R:C 0 3 3R:G 0 4 4R:A 0 5 5R:U 0 6 6R:A 0 7 7R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {21R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:U: adjacent_5p upward } 0 5 {5R:U -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {20R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:U -> 6R:A: adjacent_5p } 0 9 {6R:A -> 5R:U: adjacent_3p } 0 10 {6R:A -> 7R:C: adjacent_5p upward } 0 11 {7R:C -> 6R:A: adjacent_3p downward } 0 12 {7R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {19R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {19R:G -> 20R:U: adjacent_5p } 0 15 {20R:U -> 19R:G: adjacent_3p } 0 16 {20R:U -> 21R:C: adjacent_5p upward } 0 17 {21R:C -> 20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A59R:A 0 1 A60R:U 0 2 A61R:G 0 3 A9R:C 0 4 A10R:G 0 5 A11R:G 0 6 A12R:A 0 7 A13R:G 0 [Edges] 0 {A9R:C -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:C: adjacent_3p } 0 2 {A9R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A61R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:G: adjacent_5p } 0 5 {A11R:G -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A60R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A60R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A10R:G -> A61R:G: outward } 0 9 {A61R:G -> A10R:G: outward } 0 10 {A11R:G -> A12R:A: adjacent_5p downward } 0 11 {A12R:A -> A11R:G: adjacent_3p upward } 0 12 {A12R:A -> A13R:G: adjacent_5p } 0 13 {A13R:G -> A12R:A: adjacent_3p } 0 14 {A12R:A -> A59R:A: outward } 0 15 {A59R:A -> A12R:A: outward } 0 16 {A13R:G -> A59R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 17 {A59R:A -> A13R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 18 {A59R:A -> A60R:U: adjacent_5p } 0 19 {A60R:U -> A59R:A: adjacent_3p } 0 20 {A60R:U -> A61R:G: adjacent_5p } 0 21 {A61R:G -> A60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . . . . 5 . 10 . 6 14 . . . . 11 . 12 7 16 . . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B952R:G 0 1 B953R:G 0 2 B954R:U 0 3 B958R:A 0 4 B959R:A 0 5 B960R:U 0 6 B961R:C 0 7 B962R:C 0 [Edges] 0 {B952R:G -> B953R:G: adjacent_5p upward } 0 1 {B953R:G -> B952R:G: adjacent_3p downward } 0 2 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B953R:G -> B954R:U: adjacent_5p upward } 0 5 {B954R:U -> B953R:G: adjacent_3p downward } 0 6 {B953R:G -> B961R:C: pairing antiparallel cis Ww/Ww } 0 7 {B961R:C -> B953R:G: pairing antiparallel cis Ww/Ww } 0 8 {B954R:U -> B958R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 9 {B958R:A -> B954R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 10 {B958R:A -> B959R:A: adjacent_5p } 0 11 {B959R:A -> B958R:A: adjacent_3p } 0 12 {B958R:A -> B961R:C: upward } 0 13 {B961R:C -> B958R:A: downward } 0 14 {B959R:A -> B960R:U: adjacent_5p upward } 0 15 {B960R:U -> B959R:A: adjacent_3p downward } 0 16 {B960R:U -> B961R:C: adjacent_5p } 0 17 {B961R:C -> B960R:U: adjacent_3p } 0 18 {B961R:C -> B962R:C: adjacent_5p } 0 19 {B962R:C -> B961R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B952R:G 0 1 B953R:G 0 2 B954R:U 0 3 B958R:A 0 4 B959R:A 0 5 B960R:U 0 6 B961R:C 0 7 B962R:C 0 [Edges] 0 {B952R:G -> B953R:G: adjacent_5p upward } 0 1 {B953R:G -> B952R:G: adjacent_3p downward } 0 2 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B953R:G -> B954R:U: adjacent_5p upward } 0 5 {B954R:U -> B953R:G: adjacent_3p downward } 0 6 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B954R:U -> B958R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {B958R:A -> B954R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {B958R:A -> B959R:A: adjacent_5p } 0 11 {B959R:A -> B958R:A: adjacent_3p } 0 12 {B958R:A -> B961R:C: upward } 0 13 {B961R:C -> B958R:A: downward } 0 14 {B959R:A -> B960R:U: adjacent_5p upward } 0 15 {B960R:U -> B959R:A: adjacent_3p downward } 0 16 {B960R:U -> B961R:C: adjacent_5p } 0 17 {B961R:C -> B960R:U: adjacent_3p } 0 18 {B961R:C -> B962R:C: adjacent_5p } 0 19 {B962R:C -> B961R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:G 0 2 A6R:C 0 3 A25R:G 0 4 A26R:U 0 5 A27R:A 0 6 A28R:C 0 7 A29R:G 0 [Edges] 0 {A4R:C -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A28R:C: pairing antiparallel cis Ww/Ww } 0 7 {A28R:C -> A5R:G: pairing antiparallel cis Ww/Ww } 0 8 {A5R:G -> A29R:G: outward } 0 9 {A29R:G -> A5R:G: outward } 0 10 {A6R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A25R:G -> A26R:U: adjacent_5p upward } 0 13 {A26R:U -> A25R:G: adjacent_3p downward } 0 14 {A25R:G -> A27R:A: pairing parallel cis one_hbond 53 Bs/Hh } 0 15 {A27R:A -> A25R:G: pairing parallel cis one_hbond 53 Hh/Bs } 0 16 {A26R:U -> A27R:A: adjacent_5p } 0 17 {A27R:A -> A26R:U: adjacent_3p } 0 18 {A27R:A -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:A: adjacent_3p downward } 0 20 {A28R:C -> A29R:G: adjacent_5p } 0 21 {A29R:G -> A28R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 14 . . 4 . . . 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:C 0 3 A24R:G 0 4 A25R:G 0 5 A26R:U 0 6 A27R:A 0 7 A28R:C 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A28R:C: pairing antiparallel cis Ww/Ww } 0 3 {A28R:C -> A5R:G: pairing antiparallel cis Ww/Ww } 0 4 {A6R:C -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A24R:G -> A25R:G: adjacent_5p upward } 0 11 {A25R:G -> A24R:G: adjacent_3p downward } 0 12 {A25R:G -> A26R:U: adjacent_5p upward } 0 13 {A26R:U -> A25R:G: adjacent_3p downward } 0 14 {A25R:G -> A27R:A: pairing parallel cis one_hbond 53 Bs/Hh } 0 15 {A27R:A -> A25R:G: pairing parallel cis one_hbond 53 Hh/Bs } 0 16 {A26R:U -> A27R:A: adjacent_5p } 0 17 {A27R:A -> A26R:U: adjacent_3p } 0 18 {A27R:A -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 14 . 5 . . . . 13 . 16 . 6 . . . . 15 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:G 0 2 A9R:G 0 3 A20R:C 0 4 A21R:G 0 5 A22R:A 0 6 A23R:C 0 7 A24R:G 0 [Edges] 0 {A7R:C -> A8R:G: adjacent_5p } 0 1 {A8R:G -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A24R:G: outward } 0 9 {A24R:G -> A8R:G: outward } 0 10 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A20R:C -> A21R:G: adjacent_5p } 0 15 {A21R:G -> A20R:C: adjacent_3p } 0 16 {A21R:G -> A22R:A: adjacent_5p } 0 17 {A22R:A -> A21R:G: adjacent_3p } 0 18 {A22R:A -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:A: adjacent_3p downward } 0 20 {A23R:C -> A24R:G: adjacent_5p } 0 21 {A24R:G -> A23R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:G 0 2 A10R:U 0 3 A19R:A 0 4 A20R:C 0 5 A21R:G 0 6 A22R:A 0 7 A23R:C 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A10R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A19R:A -> A20R:C: adjacent_5p upward } 0 13 {A20R:C -> A19R:A: adjacent_3p downward } 0 14 {A20R:C -> A21R:G: adjacent_5p } 0 15 {A21R:G -> A20R:C: adjacent_3p } 0 16 {A21R:G -> A22R:A: adjacent_5p } 0 17 {A22R:A -> A21R:G: adjacent_3p } 0 18 {A22R:A -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 9 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:U 0 2 A11R:A 0 3 A18R:U 0 4 A19R:A 0 5 A20R:C 0 6 A21R:G 0 7 A22R:A 0 [Edges] 0 {A9R:G -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A10R:U -> A11R:A: adjacent_5p upward } 0 7 {A11R:A -> A10R:U: adjacent_3p downward } 0 8 {A10R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A19R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A11R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:A -> A19R:A: outward } 0 13 {A19R:A -> A11R:A: outward } 0 14 {A18R:U -> A19R:A: adjacent_5p upward } 0 15 {A19R:A -> A18R:U: adjacent_3p downward } 0 16 {A19R:A -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:A: adjacent_3p downward } 0 18 {A20R:C -> A21R:G: adjacent_5p } 0 19 {A21R:G -> A20R:C: adjacent_3p } 0 20 {A21R:G -> A22R:A: adjacent_5p } 0 21 {A22R:A -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 9 13 15 . 16 . . 5 3 . . . 17 . 18 . 6 . . . . . 19 . 20 7 5 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:A 0 2 A19R:C 0 3 A10R:G 0 4 A11R:U 0 5 A12R:C 0 6 A13R:U 0 7 A14R:U 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 3 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p } 0 5 {A12R:C -> A11R:U: adjacent_3p } 0 6 {A11R:U -> A18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A18R:A -> A11R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> A14R:U: adjacent_5p } 0 13 {A14R:U -> A13R:U: adjacent_3p } 0 14 {A14R:U -> A17R:G: pairing parallel trans one_hbond 89 Hw/Sw } 0 15 {A17R:G -> A14R:U: pairing parallel trans one_hbond 89 Sw/Hw } 0 16 {A17R:G -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:G: adjacent_3p downward } 0 18 {A18R:A -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . 11 . 15 1 17 . 18 . 7 . . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 . . . . . 9 . 12 7 14 . . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2067R:A 0 1 A2068R:G 0 2 A2069R:U 0 3 A2074R:A 0 4 A2075R:G 0 5 A2076R:U 0 6 A2077R:C 0 7 A2078R:U 0 [Edges] 0 {A2067R:A -> A2068R:G: adjacent_5p upward } 0 1 {A2068R:G -> A2067R:A: adjacent_3p downward } 0 2 {A2067R:A -> A2078R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2078R:U -> A2067R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2068R:G -> A2069R:U: adjacent_5p upward } 0 5 {A2069R:U -> A2068R:G: adjacent_3p downward } 0 6 {A2068R:G -> A2077R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2077R:C -> A2068R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2069R:U -> A2074R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {A2074R:A -> A2069R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {A2074R:A -> A2075R:G: adjacent_5p } 0 11 {A2075R:G -> A2074R:A: adjacent_3p } 0 12 {A2074R:A -> A2077R:C: upward } 0 13 {A2077R:C -> A2074R:A: downward } 0 14 {A2075R:G -> A2076R:U: adjacent_5p upward } 0 15 {A2076R:U -> A2075R:G: adjacent_3p downward } 0 16 {A2076R:U -> A2077R:C: adjacent_5p } 0 17 {A2077R:C -> A2076R:U: adjacent_3p } 0 18 {A2077R:C -> A2078R:U: adjacent_5p upward } 0 19 {A2078R:U -> A2077R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2244R:A 0 1 A2245R:C 0 2 A2246R:U 0 3 A2255R:A 0 4 A2256R:G 0 5 A2257R:G 0 6 A2258R:A 0 7 A2259R:C 0 [Edges] 0 {A2244R:A -> A2245R:C: adjacent_5p upward } 0 1 {A2245R:C -> A2244R:A: adjacent_3p downward } 0 2 {A2244R:A -> A2257R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2257R:G -> A2244R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2244R:A -> A2258R:A: outward } 0 5 {A2258R:A -> A2244R:A: outward } 0 6 {A2244R:A -> A2259R:C: pairing parallel trans one_hbond 70 Ww/Hw } 0 7 {A2259R:C -> A2244R:A: pairing parallel trans one_hbond 70 Hw/Ww } 0 8 {A2245R:C -> A2246R:U: adjacent_5p upward } 0 9 {A2246R:U -> A2245R:C: adjacent_3p downward } 0 10 {A2245R:C -> A2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2256R:G -> A2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2246R:U -> A2255R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2255R:A -> A2246R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2255R:A -> A2256R:G: adjacent_5p upward } 0 15 {A2256R:G -> A2255R:A: adjacent_3p downward } 0 16 {A2256R:G -> A2257R:G: adjacent_5p upward } 0 17 {A2257R:G -> A2256R:G: adjacent_3p downward } 0 18 {A2257R:G -> A2258R:A: adjacent_5p } 0 19 {A2258R:A -> A2257R:G: adjacent_3p } 0 20 {A2258R:A -> A2259R:C: adjacent_5p } 0 21 {A2259R:C -> A2258R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 4 6 1 1 . 8 . 10 . . . 2 . 9 . 12 . . . . 3 . . 13 . 14 . . . 4 . 11 . 15 . 16 . . 5 3 . . . 17 . 18 . 6 5 . . . . 19 . 20 7 7 . . . . . 21 . [GraphModel] [Vertices] 0 A2331R:C 0 1 A2332R:A 0 2 A2333R:G 0 3 A2351R:C 0 4 A2352R:G 0 5 A2353R:A 0 6 A2354R:A 0 7 A2355R:G 0 [Edges] 0 {A2331R:C -> A2332R:A: adjacent_5p upward } 0 1 {A2332R:A -> A2331R:C: adjacent_3p downward } 0 2 {A2331R:C -> A2355R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2355R:G -> A2331R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2332R:A -> A2333R:G: adjacent_5p upward } 0 5 {A2333R:G -> A2332R:A: adjacent_3p downward } 0 6 {A2332R:A -> A2352R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A2352R:G -> A2332R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A2332R:A -> A2355R:G: outward } 0 9 {A2355R:G -> A2332R:A: outward } 0 10 {A2333R:G -> A2351R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2351R:C -> A2333R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2351R:C -> A2352R:G: adjacent_5p upward } 0 13 {A2352R:G -> A2351R:C: adjacent_3p downward } 0 14 {A2352R:G -> A2353R:A: adjacent_5p } 0 15 {A2353R:A -> A2352R:G: adjacent_3p } 0 16 {A2353R:A -> A2354R:A: adjacent_5p downward } 0 17 {A2354R:A -> A2353R:A: adjacent_3p upward } 0 18 {A2354R:A -> A2355R:G: adjacent_5p } 0 19 {A2355R:G -> A2354R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A2356R:A 0 1 A2357R:G 0 2 A2358R:U 0 3 A2365R:G 0 4 A2366R:C 0 5 A2367R:A 0 6 A2368R:A 0 7 A2369R:A 0 [Edges] 0 {A2356R:A -> A2357R:G: adjacent_5p upward } 0 1 {A2357R:G -> A2356R:A: adjacent_3p downward } 0 2 {A2356R:A -> A2369R:A: pairing parallel trans one_hbond Wh/Ww } 0 3 {A2369R:A -> A2356R:A: pairing parallel trans one_hbond Ww/Wh } 0 4 {A2357R:G -> A2358R:U: adjacent_5p upward } 0 5 {A2358R:U -> A2357R:G: adjacent_3p downward } 0 6 {A2357R:G -> A2366R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2366R:C -> A2357R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2358R:U -> A2365R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {A2365R:G -> A2358R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {A2365R:G -> A2366R:C: adjacent_5p upward } 0 11 {A2366R:C -> A2365R:G: adjacent_3p downward } 0 12 {A2366R:C -> A2367R:A: adjacent_5p } 0 13 {A2367R:A -> A2366R:C: adjacent_3p } 0 14 {A2367R:A -> A2368R:A: adjacent_5p } 0 15 {A2368R:A -> A2367R:A: adjacent_3p } 0 16 {A2367R:A -> A2369R:A: outward } 0 17 {A2369R:A -> A2367R:A: outward } 0 18 {A2368R:A -> A2369R:A: adjacent_5p } 0 19 {A2369R:A -> A2368R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 16 6 . . . . . 15 . 18 7 3 . . . . 17 19 . [GraphModel] [Vertices] 0 A2494R:G 0 1 A2495R:U 0 2 A2496R:C 0 3 A2524R:G 0 4 A2525R:G 0 5 A2526R:C 0 6 A2527R:U 0 7 A2528R:U 0 [Edges] 0 {A2494R:G -> A2495R:U: adjacent_5p upward } 0 1 {A2495R:U -> A2494R:G: adjacent_3p downward } 0 2 {A2494R:G -> A2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A2528R:U -> A2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A2495R:U -> A2496R:C: adjacent_5p upward } 0 5 {A2496R:C -> A2495R:U: adjacent_3p downward } 0 6 {A2495R:U -> A2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 7 {A2525R:G -> A2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 8 {A2495R:U -> A2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 9 {A2527R:U -> A2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 10 {A2496R:C -> A2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2524R:G -> A2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2524R:G -> A2525R:G: adjacent_5p upward } 0 13 {A2525R:G -> A2524R:G: adjacent_3p downward } 0 14 {A2525R:G -> A2526R:C: adjacent_5p } 0 15 {A2526R:C -> A2525R:G: adjacent_3p } 0 16 {A2525R:G -> A2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {A2527R:U -> A2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 18 {A2526R:C -> A2527R:U: adjacent_5p } 0 19 {A2527R:U -> A2526R:C: adjacent_3p } 0 20 {A2527R:U -> A2528R:U: adjacent_5p upward } 0 21 {A2528R:U -> A2527R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 16 . 5 . . . . 15 . 18 . 6 . 9 . . 17 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2495R:U 0 1 A2496R:C 0 2 A2497R:A 0 3 A2523R:U 0 4 A2524R:G 0 5 A2525R:G 0 6 A2526R:C 0 7 A2527R:U 0 [Edges] 0 {A2495R:U -> A2496R:C: adjacent_5p upward } 0 1 {A2496R:C -> A2495R:U: adjacent_3p downward } 0 2 {A2495R:U -> A2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {A2525R:G -> A2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {A2495R:U -> A2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 5 {A2527R:U -> A2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 6 {A2496R:C -> A2497R:A: adjacent_5p upward } 0 7 {A2497R:A -> A2496R:C: adjacent_3p downward } 0 8 {A2496R:C -> A2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2524R:G -> A2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2497R:A -> A2523R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2523R:U -> A2497R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2497R:A -> A2524R:G: outward } 0 13 {A2524R:G -> A2497R:A: outward } 0 14 {A2523R:U -> A2524R:G: adjacent_5p upward } 0 15 {A2524R:G -> A2523R:U: adjacent_3p downward } 0 16 {A2524R:G -> A2525R:G: adjacent_5p upward } 0 17 {A2525R:G -> A2524R:G: adjacent_3p downward } 0 18 {A2525R:G -> A2526R:C: adjacent_5p } 0 19 {A2526R:C -> A2525R:G: adjacent_3p } 0 20 {A2525R:G -> A2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 21 {A2527R:U -> A2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 22 {A2526R:C -> A2527R:U: adjacent_5p } 0 23 {A2527R:U -> A2526R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 9 13 15 . 16 . . 5 3 . . . 17 . 18 20 6 . . . . . 19 . 22 7 5 . . . . 21 23 . [GraphModel] [Vertices] 0 A2544R:G 0 1 A2545R:U 0 2 A2546R:U 0 3 A2610R:U 0 4 A2611R:G 0 5 A2612R:A 0 6 A2613R:G 0 7 A2614R:C 0 [Edges] 0 {A2544R:G -> A2545R:U: adjacent_5p upward } 0 1 {A2545R:U -> A2544R:G: adjacent_3p downward } 0 2 {A2544R:G -> A2614R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2614R:C -> A2544R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2545R:U -> A2546R:U: adjacent_5p upward } 0 5 {A2546R:U -> A2545R:U: adjacent_3p downward } 0 6 {A2545R:U -> A2613R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A2613R:G -> A2545R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A2546R:U -> A2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 9 {A2610R:U -> A2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 10 {A2610R:U -> A2611R:G: adjacent_5p } 0 11 {A2611R:G -> A2610R:U: adjacent_3p } 0 12 {A2611R:G -> A2612R:A: adjacent_5p } 0 13 {A2612R:A -> A2611R:G: adjacent_3p } 0 14 {A2612R:A -> A2613R:G: adjacent_5p } 0 15 {A2613R:G -> A2612R:A: adjacent_3p } 0 16 {A2613R:G -> A2614R:C: adjacent_5p upward } 0 17 {A2614R:C -> A2613R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A2545R:U 0 1 A2546R:U 0 2 A2547R:C 0 3 A2609R:G 0 4 A2610R:U 0 5 A2611R:G 0 6 A2612R:A 0 7 A2613R:G 0 [Edges] 0 {A2545R:U -> A2546R:U: adjacent_5p upward } 0 1 {A2546R:U -> A2545R:U: adjacent_3p downward } 0 2 {A2545R:U -> A2613R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2613R:G -> A2545R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2546R:U -> A2547R:C: adjacent_5p upward } 0 5 {A2547R:C -> A2546R:U: adjacent_3p downward } 0 6 {A2546R:U -> A2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {A2610R:U -> A2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A2547R:C -> A2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2609R:G -> A2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2609R:G -> A2610R:U: adjacent_5p upward } 0 11 {A2610R:U -> A2609R:G: adjacent_3p downward } 0 12 {A2610R:U -> A2611R:G: adjacent_5p } 0 13 {A2611R:G -> A2610R:U: adjacent_3p } 0 14 {A2611R:G -> A2612R:A: adjacent_5p } 0 15 {A2612R:A -> A2611R:G: adjacent_3p } 0 16 {A2612R:A -> A2613R:G: adjacent_5p } 0 17 {A2613R:G -> A2612R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A2546R:U 0 1 A2547R:C 0 2 A2548R:C 0 3 A2606R:G 0 4 A2607R:U 0 5 A2608R:C 0 6 A2609R:G 0 7 A2610R:U 0 [Edges] 0 {A2546R:U -> A2547R:C: adjacent_5p upward } 0 1 {A2547R:C -> A2546R:U: adjacent_3p downward } 0 2 {A2546R:U -> A2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A2610R:U -> A2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A2547R:C -> A2548R:C: adjacent_5p } 0 5 {A2548R:C -> A2547R:C: adjacent_3p } 0 6 {A2547R:C -> A2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2609R:G -> A2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2548R:C -> A2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2606R:G -> A2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2606R:G -> A2607R:U: adjacent_5p } 0 11 {A2607R:U -> A2606R:G: adjacent_3p } 0 12 {A2606R:G -> A2609R:G: upward } 0 13 {A2609R:G -> A2606R:G: downward } 0 14 {A2607R:U -> A2608R:C: adjacent_5p } 0 15 {A2608R:C -> A2607R:U: adjacent_3p } 0 16 {A2608R:C -> A2609R:G: adjacent_5p } 0 17 {A2609R:G -> A2608R:C: adjacent_3p } 0 18 {A2609R:G -> A2610R:U: adjacent_5p upward } 0 19 {A2610R:U -> A2609R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2547R:C 0 1 A2548R:C 0 2 A2549R:C 0 3 A2605R:G 0 4 A2606R:G 0 5 A2607R:U 0 6 A2608R:C 0 7 A2609R:G 0 [Edges] 0 {A2547R:C -> A2548R:C: adjacent_5p } 0 1 {A2548R:C -> A2547R:C: adjacent_3p } 0 2 {A2547R:C -> A2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2609R:G -> A2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2548R:C -> A2549R:C: adjacent_5p upward } 0 5 {A2549R:C -> A2548R:C: adjacent_3p downward } 0 6 {A2548R:C -> A2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2606R:G -> A2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2549R:C -> A2605R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2605R:G -> A2549R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2605R:G -> A2606R:G: adjacent_5p upward } 0 11 {A2606R:G -> A2605R:G: adjacent_3p downward } 0 12 {A2606R:G -> A2607R:U: adjacent_5p } 0 13 {A2607R:U -> A2606R:G: adjacent_3p } 0 14 {A2606R:G -> A2609R:G: upward } 0 15 {A2609R:G -> A2606R:G: downward } 0 16 {A2607R:U -> A2608R:C: adjacent_5p } 0 17 {A2608R:C -> A2607R:U: adjacent_3p } 0 18 {A2608R:C -> A2609R:G: adjacent_5p } 0 19 {A2609R:G -> A2608R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . 14 5 . . . . 13 . 16 . 6 . . . . . 17 . 18 7 3 . . . 15 . 19 . [GraphModel] [Vertices] 0 A2556R:C 0 1 A2557R:U 0 2 A2558R:G 0 3 A2575R:C 0 4 A2576R:A 0 5 A2577R:A 0 6 A2578R:G 0 7 A2579R:G 0 [Edges] 0 {A2556R:C -> A2557R:U: adjacent_5p upward } 0 1 {A2557R:U -> A2556R:C: adjacent_3p downward } 0 2 {A2556R:C -> A2579R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2579R:G -> A2556R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2557R:U -> A2558R:G: adjacent_5p } 0 5 {A2558R:G -> A2557R:U: adjacent_3p } 0 6 {A2557R:U -> A2578R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A2578R:G -> A2557R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A2558R:G -> A2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2575R:C -> A2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2575R:C -> A2576R:A: adjacent_5p upward } 0 11 {A2576R:A -> A2575R:C: adjacent_3p downward } 0 12 {A2576R:A -> A2577R:A: adjacent_5p } 0 13 {A2577R:A -> A2576R:A: adjacent_3p } 0 14 {A2577R:A -> A2578R:G: adjacent_5p } 0 15 {A2578R:G -> A2577R:A: adjacent_3p } 0 16 {A2578R:G -> A2579R:G: adjacent_5p upward } 0 17 {A2579R:G -> A2578R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A2557R:U 0 1 A2558R:G 0 2 A2559R:C 0 3 A2574R:G 0 4 A2575R:C 0 5 A2576R:A 0 6 A2577R:A 0 7 A2578R:G 0 [Edges] 0 {A2557R:U -> A2558R:G: adjacent_5p } 0 1 {A2558R:G -> A2557R:U: adjacent_3p } 0 2 {A2557R:U -> A2578R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2578R:G -> A2557R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2558R:G -> A2559R:C: adjacent_5p upward } 0 5 {A2559R:C -> A2558R:G: adjacent_3p downward } 0 6 {A2558R:G -> A2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2575R:C -> A2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2559R:C -> A2574R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2574R:G -> A2559R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2574R:G -> A2575R:C: adjacent_5p upward } 0 11 {A2575R:C -> A2574R:G: adjacent_3p downward } 0 12 {A2575R:C -> A2576R:A: adjacent_5p upward } 0 13 {A2576R:A -> A2575R:C: adjacent_3p downward } 0 14 {A2576R:A -> A2577R:A: adjacent_5p } 0 15 {A2577R:A -> A2576R:A: adjacent_3p } 0 16 {A2577R:A -> A2578R:G: adjacent_5p } 0 17 {A2578R:G -> A2577R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A2580R:G 0 1 A2581R:U 0 2 A2582R:G 0 3 A2596R:A 0 4 A2597R:U 0 5 A2598R:U 0 6 A2599R:A 0 7 A2600R:A 0 [Edges] 0 {A2580R:G -> A2581R:U: adjacent_5p upward } 0 1 {A2581R:U -> A2580R:G: adjacent_3p downward } 0 2 {A2580R:G -> A2600R:A: pairing parallel trans 57 Ss/Ss } 0 3 {A2600R:A -> A2580R:G: pairing parallel trans 57 Ss/Ss } 0 4 {A2581R:U -> A2582R:G: adjacent_5p } 0 5 {A2582R:G -> A2581R:U: adjacent_3p } 0 6 {A2582R:G -> A2596R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A2596R:A -> A2582R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A2596R:A -> A2597R:U: adjacent_5p upward } 0 9 {A2597R:U -> A2596R:A: adjacent_3p downward } 0 10 {A2597R:U -> A2598R:U: adjacent_5p upward } 0 11 {A2598R:U -> A2597R:U: adjacent_3p downward } 0 12 {A2598R:U -> A2599R:A: adjacent_5p } 0 13 {A2599R:A -> A2598R:U: adjacent_3p } 0 14 {A2599R:A -> A2600R:A: adjacent_5p upward } 0 15 {A2600R:A -> A2599R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 B19R:U 0 4 B20R:U 0 5 B21R:U 0 6 B22R:C 0 7 B23R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> B23R:G: outward } 0 9 {B23R:G -> A9R:G: outward } 0 10 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A10R:G -> B22R:C: outward } 0 13 {B22R:C -> A10R:G: outward } 0 14 {B19R:U -> B20R:U: adjacent_5p } 0 15 {B20R:U -> B19R:U: adjacent_3p } 0 16 {B20R:U -> B21R:U: adjacent_5p } 0 17 {B21R:U -> B20R:U: adjacent_3p } 0 18 {B21R:U -> B22R:C: adjacent_5p } 0 19 {B22R:C -> B21R:U: adjacent_3p } 0 20 {B22R:C -> B23R:G: adjacent_5p } 0 21 {B23R:G -> B22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . 12 . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . . . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 B18R:A 0 4 B19R:U 0 5 B20R:U 0 6 B21R:U 0 7 B22R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A10R:G -> B22R:C: outward } 0 9 {B22R:C -> A10R:G: outward } 0 10 {A11R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B18R:A -> B19R:U: adjacent_5p upward } 0 13 {B19R:U -> B18R:A: adjacent_3p downward } 0 14 {B19R:U -> B20R:U: adjacent_5p } 0 15 {B20R:U -> B19R:U: adjacent_3p } 0 16 {B20R:U -> B21R:U: adjacent_5p } 0 17 {B21R:U -> B20R:U: adjacent_3p } 0 18 {B21R:U -> B22R:C: adjacent_5p } 0 19 {B22R:C -> B21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 B22R:C 0 1 B23R:G 0 2 B24R:G 0 3 A5R:U 0 4 A6R:U 0 5 A7R:U 0 6 A8R:C 0 7 A9R:G 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:U: adjacent_3p } 0 2 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A7R:U -> A8R:C: adjacent_5p } 0 7 {A8R:C -> A7R:U: adjacent_3p } 0 8 {A8R:C -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:C: adjacent_3p } 0 10 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> B24R:G: outward } 0 13 {B24R:G -> A8R:C: outward } 0 14 {A9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A9R:G -> B23R:G: outward } 0 17 {B23R:G -> A9R:G: outward } 0 18 {B22R:C -> B23R:G: adjacent_5p } 0 19 {B23R:G -> B22R:C: adjacent_3p } 0 20 {B23R:G -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . . . 11 17 2 . 21 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 16 . . . . 9 . [GraphModel] [Vertices] 0 B23R:G 0 1 B24R:G 0 2 B25R:U 0 3 A4R:A 0 4 A5R:U 0 5 A6R:U 0 6 A7R:U 0 7 A8R:C 0 [Edges] 0 {A4R:A -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B25R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:U: adjacent_3p } 0 6 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A7R:U: adjacent_5p } 0 9 {A7R:U -> A6R:U: adjacent_3p } 0 10 {A7R:U -> A8R:C: adjacent_5p } 0 11 {A8R:C -> A7R:U: adjacent_3p } 0 12 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:C -> B24R:G: outward } 0 15 {B24R:G -> A8R:C: outward } 0 16 {B23R:G -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:G: adjacent_3p downward } 0 18 {B24R:G -> B25R:U: adjacent_5p upward } 0 19 {B25R:U -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . 7 . . 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 D654R:G 0 1 D655R:A 0 2 D656R:C 0 3 E750R:G 0 4 E751R:U 0 5 E752R:G 0 6 E753R:A 0 7 E754R:C 0 [Edges] 0 {D654R:G -> D655R:A: adjacent_5p upward } 0 1 {D655R:A -> D654R:G: adjacent_3p downward } 0 2 {D654R:G -> E752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {E752R:G -> D654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {D654R:G -> E753R:A: outward } 0 5 {E753R:A -> D654R:G: outward } 0 6 {D654R:G -> E754R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E754R:C -> D654R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D655R:A -> D656R:C: adjacent_5p upward } 0 9 {D656R:C -> D655R:A: adjacent_3p downward } 0 10 {D655R:A -> E751R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E751R:U -> D655R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D656R:C -> E750R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E750R:G -> D656R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E750R:G -> E751R:U: adjacent_5p upward } 0 15 {E751R:U -> E750R:G: adjacent_3p downward } 0 16 {E751R:U -> E752R:G: adjacent_5p upward } 0 17 {E752R:G -> E751R:U: adjacent_3p downward } 0 18 {E752R:G -> E753R:A: adjacent_5p } 0 19 {E753R:A -> E752R:G: adjacent_3p } 0 20 {E753R:A -> E754R:C: adjacent_5p } 0 21 {E754R:C -> E753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 4 6 1 1 . 8 . 10 . . . 2 . 9 . 12 . . . . 3 . . 13 . 14 . . . 4 . 11 . 15 . 16 . . 5 3 . . . 17 . 18 . 6 5 . . . . 19 . 20 7 7 . . . . . 21 . [GraphModel] [Vertices] 0 E731R:G 0 1 E732R:C 0 2 E733R:A 0 3 E722R:A 0 4 E723R:U 0 5 E724R:G 0 6 E725R:G 0 7 E726R:C 0 [Edges] 0 {E722R:A -> E723R:U: adjacent_5p } 0 1 {E723R:U -> E722R:A: adjacent_3p } 0 2 {E722R:A -> E724R:G: outward } 0 3 {E724R:G -> E722R:A: outward } 0 4 {E722R:A -> E733R:A: pairing parallel trans I Ww/Ww } 0 5 {E733R:A -> E722R:A: pairing parallel trans I Ww/Ww } 0 6 {E723R:U -> E724R:G: adjacent_5p } 0 7 {E724R:G -> E723R:U: adjacent_3p } 0 8 {E724R:G -> E725R:G: adjacent_5p upward } 0 9 {E725R:G -> E724R:G: adjacent_3p downward } 0 10 {E725R:G -> E726R:C: adjacent_5p upward } 0 11 {E726R:C -> E725R:G: adjacent_3p downward } 0 12 {E725R:G -> E732R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E732R:C -> E725R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E726R:C -> E731R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E731R:G -> E726R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E731R:G -> E732R:C: adjacent_5p upward } 0 17 {E732R:C -> E731R:G: adjacent_3p downward } 0 18 {E732R:C -> E733R:A: adjacent_5p } 0 19 {E733R:A -> E732R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 I654R:G 0 1 I655R:A 0 2 I656R:C 0 3 J750R:G 0 4 J751R:U 0 5 J752R:G 0 6 J753R:A 0 7 J754R:C 0 [Edges] 0 {I654R:G -> I655R:A: adjacent_5p upward } 0 1 {I655R:A -> I654R:G: adjacent_3p downward } 0 2 {I654R:G -> J752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {J752R:G -> I654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {I654R:G -> J753R:A: outward } 0 5 {J753R:A -> I654R:G: outward } 0 6 {I654R:G -> J754R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J754R:C -> I654R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I655R:A -> I656R:C: adjacent_5p upward } 0 9 {I656R:C -> I655R:A: adjacent_3p downward } 0 10 {I655R:A -> J751R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {J751R:U -> I655R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {I656R:C -> J750R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {J750R:G -> I656R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {J750R:G -> J751R:U: adjacent_5p upward } 0 15 {J751R:U -> J750R:G: adjacent_3p downward } 0 16 {J751R:U -> J752R:G: adjacent_5p upward } 0 17 {J752R:G -> J751R:U: adjacent_3p downward } 0 18 {J752R:G -> J753R:A: adjacent_5p } 0 19 {J753R:A -> J752R:G: adjacent_3p } 0 20 {J753R:A -> J754R:C: adjacent_5p } 0 21 {J754R:C -> J753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 4 6 1 1 . 8 . 10 . . . 2 . 9 . 12 . . . . 3 . . 13 . 14 . . . 4 . 11 . 15 . 16 . . 5 3 . . . 17 . 18 . 6 5 . . . . 19 . 20 7 7 . . . . . 21 . [GraphModel] [Vertices] 0 J731R:G 0 1 J732R:C 0 2 J733R:A 0 3 J722R:A 0 4 J723R:U 0 5 J724R:G 0 6 J725R:G 0 7 J726R:C 0 [Edges] 0 {J722R:A -> J723R:U: adjacent_5p } 0 1 {J723R:U -> J722R:A: adjacent_3p } 0 2 {J722R:A -> J724R:G: outward } 0 3 {J724R:G -> J722R:A: outward } 0 4 {J722R:A -> J733R:A: pairing parallel trans I Ww/Ww } 0 5 {J733R:A -> J722R:A: pairing parallel trans I Ww/Ww } 0 6 {J723R:U -> J724R:G: adjacent_5p } 0 7 {J724R:G -> J723R:U: adjacent_3p } 0 8 {J724R:G -> J725R:G: adjacent_5p upward } 0 9 {J725R:G -> J724R:G: adjacent_3p downward } 0 10 {J725R:G -> J726R:C: adjacent_5p upward } 0 11 {J726R:C -> J725R:G: adjacent_3p downward } 0 12 {J725R:G -> J732R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J732R:C -> J725R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {J726R:C -> J731R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {J731R:G -> J726R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {J731R:G -> J732R:C: adjacent_5p upward } 0 17 {J732R:C -> J731R:G: adjacent_3p downward } 0 18 {J732R:C -> J733R:A: adjacent_5p } 0 19 {J733R:A -> J732R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 T44R:G 0 1 T45R:G 0 2 T46R:G 0 3 T22R:G 0 4 T23R:C 0 5 T24R:G 0 6 T25R:C 0 7 T26R:A 0 [Edges] 0 {T22R:G -> T23R:C: adjacent_5p upward } 0 1 {T23R:C -> T22R:G: adjacent_3p downward } 0 2 {T22R:G -> T46R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {T46R:G -> T22R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {T23R:C -> T24R:G: adjacent_5p } 0 5 {T24R:G -> T23R:C: adjacent_3p } 0 6 {T24R:G -> T25R:C: adjacent_5p upward } 0 7 {T25R:C -> T24R:G: adjacent_3p downward } 0 8 {T25R:C -> T26R:A: adjacent_5p upward } 0 9 {T26R:A -> T25R:C: adjacent_3p downward } 0 10 {T26R:A -> T44R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {T44R:G -> T26R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {T44R:G -> T45R:G: adjacent_5p upward } 0 13 {T45R:G -> T44R:G: adjacent_3p downward } 0 14 {T45R:G -> T46R:G: adjacent_5p } 0 15 {T46R:G -> T45R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C105R:G 0 1 C106R:G 0 2 C107R:A 0 3 C131R:U 0 4 C132R:U 0 5 C133R:U 0 6 C134R:A 0 7 C135R:A 0 [Edges] 0 {C105R:G -> C106R:G: adjacent_5p upward } 0 1 {C106R:G -> C105R:G: adjacent_3p downward } 0 2 {C105R:G -> C135R:A: pairing parallel trans 57 Ss/Ss } 0 3 {C135R:A -> C105R:G: pairing parallel trans 57 Ss/Ss } 0 4 {C106R:G -> C107R:A: adjacent_5p } 0 5 {C107R:A -> C106R:G: adjacent_3p } 0 6 {C107R:A -> C131R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C131R:U -> C107R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C131R:U -> C132R:U: adjacent_5p upward } 0 9 {C132R:U -> C131R:U: adjacent_3p downward } 0 10 {C132R:U -> C133R:U: adjacent_5p upward } 0 11 {C133R:U -> C132R:U: adjacent_3p downward } 0 12 {C133R:U -> C134R:A: adjacent_5p } 0 13 {C134R:A -> C133R:U: adjacent_3p } 0 14 {C134R:A -> C135R:A: adjacent_5p upward } 0 15 {C135R:A -> C134R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 C150R:C 0 1 C151R:U 0 2 C152R:C 0 3 C137R:G 0 4 C138R:A 0 5 C139R:A 0 6 C140R:A 0 7 C141R:G 0 [Edges] 0 {C137R:G -> C138R:A: adjacent_5p } 0 1 {C138R:A -> C137R:G: adjacent_3p } 0 2 {C137R:G -> C139R:A: upward } 0 3 {C139R:A -> C137R:G: downward } 0 4 {C137R:G -> C152R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C152R:C -> C137R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C138R:A -> C139R:A: adjacent_5p } 0 7 {C139R:A -> C138R:A: adjacent_3p } 0 8 {C139R:A -> C140R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {C140R:A -> C139R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 10 {C140R:A -> C141R:G: adjacent_5p upward } 0 11 {C141R:G -> C140R:A: adjacent_3p downward } 0 12 {C140R:A -> C151R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C151R:U -> C140R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C140R:A -> C152R:C: outward } 0 15 {C152R:C -> C140R:A: outward } 0 16 {C141R:G -> C150R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {C150R:C -> C141R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {C150R:C -> C151R:U: adjacent_5p upward } 0 19 {C151R:U -> C150R:C: adjacent_3p downward } 0 20 {C151R:U -> C152R:C: adjacent_5p upward } 0 21 {C152R:C -> C151R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . . . 13 . 2 . 21 . 5 . . 15 . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 14 . . 9 . 10 7 16 . . . . . 11 . [GraphModel] [Vertices] 0 D305R:G 0 1 D306R:G 0 2 D307R:A 0 3 D331R:U 0 4 D332R:U 0 5 D333R:U 0 6 D334R:A 0 7 D335R:A 0 [Edges] 0 {D305R:G -> D306R:G: adjacent_5p upward } 0 1 {D306R:G -> D305R:G: adjacent_3p downward } 0 2 {D305R:G -> D335R:A: pairing parallel trans 57 Ss/Ss } 0 3 {D335R:A -> D305R:G: pairing parallel trans 57 Ss/Ss } 0 4 {D306R:G -> D307R:A: adjacent_5p } 0 5 {D307R:A -> D306R:G: adjacent_3p } 0 6 {D307R:A -> D331R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D331R:U -> D307R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D331R:U -> D332R:U: adjacent_5p upward } 0 9 {D332R:U -> D331R:U: adjacent_3p downward } 0 10 {D332R:U -> D333R:U: adjacent_5p upward } 0 11 {D333R:U -> D332R:U: adjacent_3p downward } 0 12 {D333R:U -> D334R:A: adjacent_5p } 0 13 {D334R:A -> D333R:U: adjacent_3p } 0 14 {D334R:A -> D335R:A: adjacent_5p upward } 0 15 {D335R:A -> D334R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 D350R:C 0 1 D351R:U 0 2 D352R:C 0 3 D337R:G 0 4 D338R:A 0 5 D339R:A 0 6 D340R:A 0 7 D341R:G 0 [Edges] 0 {D337R:G -> D338R:A: adjacent_5p } 0 1 {D338R:A -> D337R:G: adjacent_3p } 0 2 {D337R:G -> D339R:A: upward } 0 3 {D339R:A -> D337R:G: downward } 0 4 {D337R:G -> D352R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {D352R:C -> D337R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D338R:A -> D339R:A: adjacent_5p } 0 7 {D339R:A -> D338R:A: adjacent_3p } 0 8 {D339R:A -> D340R:A: adjacent_5p } 0 9 {D340R:A -> D339R:A: adjacent_3p } 0 10 {D340R:A -> D341R:G: adjacent_5p upward } 0 11 {D341R:G -> D340R:A: adjacent_3p downward } 0 12 {D340R:A -> D351R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D351R:U -> D340R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D340R:A -> D352R:C: outward } 0 15 {D352R:C -> D340R:A: outward } 0 16 {D341R:G -> D350R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {D350R:C -> D341R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {D350R:C -> D351R:U: adjacent_5p } 0 19 {D351R:U -> D350R:C: adjacent_3p } 0 20 {D351R:U -> D352R:C: adjacent_5p } 0 21 {D352R:C -> D351R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . . . 13 . 2 . 21 . 5 . . 15 . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 14 . . 9 . 10 7 16 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C11R:A 0 1 C12R:G 0 2 C13R:U 0 3 C24R:A 0 4 C25R:U 0 5 C26R:A 0 6 C27R:C 0 7 C28R:U 0 [Edges] 0 {C11R:A -> C12R:G: adjacent_5p upward } 0 1 {C12R:G -> C11R:A: adjacent_3p downward } 0 2 {C11R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C28R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C12R:G -> C13R:U: adjacent_5p upward } 0 5 {C13R:U -> C12R:G: adjacent_3p downward } 0 6 {C12R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C27R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C24R:A -> C13R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C24R:A -> C25R:U: adjacent_5p upward } 0 11 {C25R:U -> C24R:A: adjacent_3p downward } 0 12 {C25R:U -> C26R:A: adjacent_5p } 0 13 {C26R:A -> C25R:U: adjacent_3p } 0 14 {C26R:A -> C27R:C: adjacent_5p upward } 0 15 {C27R:C -> C26R:A: adjacent_3p downward } 0 16 {C27R:C -> C28R:U: adjacent_5p upward } 0 17 {C28R:U -> C27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C12R:G 0 1 C13R:U 0 2 C14R:C 0 3 C23R:G 0 4 C24R:A 0 5 C25R:U 0 6 C26R:A 0 7 C27R:C 0 [Edges] 0 {C12R:G -> C13R:U: adjacent_5p upward } 0 1 {C13R:U -> C12R:G: adjacent_3p downward } 0 2 {C12R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C27R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C13R:U -> C14R:C: adjacent_5p upward } 0 5 {C14R:C -> C13R:U: adjacent_3p downward } 0 6 {C13R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C24R:A -> C13R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C14R:C -> C23R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {C23R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {C23R:G -> C24R:A: adjacent_5p upward } 0 11 {C24R:A -> C23R:G: adjacent_3p downward } 0 12 {C24R:A -> C25R:U: adjacent_5p upward } 0 13 {C25R:U -> C24R:A: adjacent_3p downward } 0 14 {C25R:U -> C26R:A: adjacent_5p } 0 15 {C26R:A -> C25R:U: adjacent_3p } 0 16 {C26R:A -> C27R:C: adjacent_5p upward } 0 17 {C27R:C -> C26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D11R:A 0 1 D12R:G 0 2 D13R:U 0 3 D24R:A 0 4 D25R:U 0 5 D26R:A 0 6 D27R:C 0 7 D28R:U 0 [Edges] 0 {D11R:A -> D12R:G: adjacent_5p upward } 0 1 {D12R:G -> D11R:A: adjacent_3p downward } 0 2 {D11R:A -> D28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D28R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D12R:G -> D13R:U: adjacent_5p upward } 0 5 {D13R:U -> D12R:G: adjacent_3p downward } 0 6 {D12R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D27R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D13R:U -> D26R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 11 {D26R:A -> D13R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 12 {D24R:A -> D25R:U: adjacent_5p upward } 0 13 {D25R:U -> D24R:A: adjacent_3p downward } 0 14 {D25R:U -> D26R:A: adjacent_5p } 0 15 {D26R:A -> D25R:U: adjacent_3p } 0 16 {D26R:A -> D27R:C: adjacent_5p upward } 0 17 {D27R:C -> D26R:A: adjacent_3p downward } 0 18 {D27R:C -> D28R:U: adjacent_5p upward } 0 19 {D28R:U -> D27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D12R:G 0 1 D13R:U 0 2 D14R:C 0 3 D23R:G 0 4 D24R:A 0 5 D25R:U 0 6 D26R:A 0 7 D27R:C 0 [Edges] 0 {D12R:G -> D13R:U: adjacent_5p upward } 0 1 {D13R:U -> D12R:G: adjacent_3p downward } 0 2 {D12R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D27R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D13R:U -> D14R:C: adjacent_5p upward } 0 5 {D14R:C -> D13R:U: adjacent_3p downward } 0 6 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D13R:U -> D26R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 9 {D26R:A -> D13R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 10 {D14R:C -> D23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D23R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D23R:G -> D24R:A: adjacent_5p upward } 0 13 {D24R:A -> D23R:G: adjacent_3p downward } 0 14 {D24R:A -> D25R:U: adjacent_5p upward } 0 15 {D25R:U -> D24R:A: adjacent_3p downward } 0 16 {D25R:U -> D26R:A: adjacent_5p } 0 17 {D26R:A -> D25R:U: adjacent_3p } 0 18 {D26R:A -> D27R:C: adjacent_5p upward } 0 19 {D27R:C -> D26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 9 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D13R:U 0 1 D14R:C 0 2 D15R:U 0 3 D22R:A 0 4 D23R:G 0 5 D24R:A 0 6 D25R:U 0 7 D26R:A 0 [Edges] 0 {D13R:U -> D14R:C: adjacent_5p upward } 0 1 {D14R:C -> D13R:U: adjacent_3p downward } 0 2 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D13R:U -> D26R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 5 {D26R:A -> D13R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 6 {D14R:C -> D15R:U: adjacent_5p } 0 7 {D15R:U -> D14R:C: adjacent_3p } 0 8 {D14R:C -> D23R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D23R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D15R:U -> D22R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D22R:A -> D15R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D22R:A -> D23R:G: adjacent_5p upward } 0 13 {D23R:G -> D22R:A: adjacent_3p downward } 0 14 {D23R:G -> D24R:A: adjacent_5p upward } 0 15 {D24R:A -> D23R:G: adjacent_3p downward } 0 16 {D24R:A -> D25R:U: adjacent_5p upward } 0 17 {D25R:U -> D24R:A: adjacent_3p downward } 0 18 {D25R:U -> D26R:A: adjacent_5p } 0 19 {D26R:A -> D25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . . 5 3 . . . 15 . 16 . 6 . . . . . 17 . 18 7 5 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A44R:A 0 1 A45R:G 0 2 A46R:G 0 3 A22R:G 0 4 A23R:A 0 5 A24R:G 0 6 A25R:C 0 7 A26R:G 0 [Edges] 0 {A22R:G -> A23R:A: adjacent_5p upward } 0 1 {A23R:A -> A22R:G: adjacent_3p downward } 0 2 {A22R:G -> A46R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {A46R:G -> A22R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {A23R:A -> A24R:G: adjacent_5p upward } 0 5 {A24R:G -> A23R:A: adjacent_3p downward } 0 6 {A24R:G -> A25R:C: adjacent_5p upward } 0 7 {A25R:C -> A24R:G: adjacent_3p downward } 0 8 {A25R:C -> A26R:G: adjacent_5p upward } 0 9 {A26R:G -> A25R:C: adjacent_3p downward } 0 10 {A26R:G -> A44R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {A44R:A -> A26R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A44R:A -> A45R:G: adjacent_5p upward } 0 13 {A45R:G -> A44R:A: adjacent_3p downward } 0 14 {A45R:G -> A46R:G: adjacent_5p } 0 15 {A46R:G -> A45R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 B19R:U 0 4 B20R:U 0 5 B21R:U 0 6 B22R:U 0 7 B23R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B22R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 7 {B22R:U -> A9R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 8 {A9R:G -> B23R:G: outward } 0 9 {B23R:G -> A9R:G: outward } 0 10 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A10R:G -> B22R:U: outward } 0 13 {B22R:U -> A10R:G: outward } 0 14 {B19R:U -> B20R:U: adjacent_5p } 0 15 {B20R:U -> B19R:U: adjacent_3p } 0 16 {B20R:U -> B21R:U: adjacent_5p } 0 17 {B21R:U -> B20R:U: adjacent_3p } 0 18 {B21R:U -> B22R:U: adjacent_5p } 0 19 {B22R:U -> B21R:U: adjacent_3p } 0 20 {B22R:U -> B23R:G: adjacent_5p } 0 21 {B23R:G -> B22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . 12 . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . . . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 B18R:A 0 4 B19R:U 0 5 B20R:U 0 6 B21R:U 0 7 B22R:U 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B22R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 3 {B22R:U -> A9R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A10R:G -> B22R:U: outward } 0 9 {B22R:U -> A10R:G: outward } 0 10 {A11R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B18R:A -> B19R:U: adjacent_5p upward } 0 13 {B19R:U -> B18R:A: adjacent_3p downward } 0 14 {B19R:U -> B20R:U: adjacent_5p } 0 15 {B20R:U -> B19R:U: adjacent_3p } 0 16 {B20R:U -> B21R:U: adjacent_5p } 0 17 {B21R:U -> B20R:U: adjacent_3p } 0 18 {B21R:U -> B22R:U: adjacent_5p } 0 19 {B22R:U -> B21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 B22R:U 0 1 B23R:G 0 2 B24R:G 0 3 A5R:U 0 4 A6R:U 0 5 A7R:U 0 6 A8R:C 0 7 A9R:G 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:U: adjacent_3p } 0 2 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A7R:U -> A8R:C: adjacent_5p } 0 7 {A8R:C -> A7R:U: adjacent_3p } 0 8 {A8R:C -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:C: adjacent_3p } 0 10 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> B24R:G: outward } 0 13 {B24R:G -> A8R:C: outward } 0 14 {A9R:G -> B22R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 15 {B22R:U -> A9R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 16 {A9R:G -> B23R:G: outward } 0 17 {B23R:G -> A9R:G: outward } 0 18 {B22R:U -> B23R:G: adjacent_5p } 0 19 {B23R:G -> B22R:U: adjacent_3p } 0 20 {B23R:G -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . . . 11 17 2 . 21 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 16 . . . . 9 . [GraphModel] [Vertices] 0 B23R:G 0 1 B24R:G 0 2 B25R:U 0 3 A4R:A 0 4 A5R:U 0 5 A6R:U 0 6 A7R:U 0 7 A8R:C 0 [Edges] 0 {A4R:A -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B25R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:U: adjacent_3p } 0 6 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A7R:U: adjacent_5p } 0 9 {A7R:U -> A6R:U: adjacent_3p } 0 10 {A7R:U -> A8R:C: adjacent_5p } 0 11 {A8R:C -> A7R:U: adjacent_3p } 0 12 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:C -> B24R:G: outward } 0 15 {B24R:G -> A8R:C: outward } 0 16 {B23R:G -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:G: adjacent_3p downward } 0 18 {B24R:G -> B25R:U: adjacent_5p upward } 0 19 {B25R:U -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . 7 . . 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C944R:A 0 1 C945R:G 0 2 C946R:A 0 3 C922R:G 0 4 C923R:A 0 5 C924R:A 0 6 C925R:U 0 7 C926R:G 0 [Edges] 0 {C922R:G -> C923R:A: adjacent_5p upward } 0 1 {C923R:A -> C922R:G: adjacent_3p downward } 0 2 {C922R:G -> C946R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {C946R:A -> C922R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {C923R:A -> C924R:A: adjacent_5p upward } 0 5 {C924R:A -> C923R:A: adjacent_3p downward } 0 6 {C924R:A -> C925R:U: adjacent_5p upward } 0 7 {C925R:U -> C924R:A: adjacent_3p downward } 0 8 {C925R:U -> C926R:G: adjacent_5p upward } 0 9 {C926R:G -> C925R:U: adjacent_3p downward } 0 10 {C925R:U -> C945R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 11 {C945R:G -> C925R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 12 {C926R:G -> C944R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {C944R:A -> C926R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {C944R:A -> C945R:G: adjacent_5p upward } 0 15 {C945R:G -> C944R:A: adjacent_3p downward } 0 16 {C945R:G -> C946R:A: adjacent_5p } 0 17 {C946R:A -> C945R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 D1944R:A 0 1 D1945R:G 0 2 D1946R:A 0 3 D1922R:G 0 4 D1923R:A 0 5 D1924R:A 0 6 D1925R:U 0 7 D1926R:G 0 [Edges] 0 {D1922R:G -> D1923R:A: adjacent_5p upward } 0 1 {D1923R:A -> D1922R:G: adjacent_3p downward } 0 2 {D1922R:G -> D1946R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {D1946R:A -> D1922R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {D1923R:A -> D1924R:A: adjacent_5p upward } 0 5 {D1924R:A -> D1923R:A: adjacent_3p downward } 0 6 {D1924R:A -> D1925R:U: adjacent_5p upward } 0 7 {D1925R:U -> D1924R:A: adjacent_3p downward } 0 8 {D1925R:U -> D1926R:G: adjacent_5p upward } 0 9 {D1926R:G -> D1925R:U: adjacent_3p downward } 0 10 {D1925R:U -> D1945R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 11 {D1945R:G -> D1925R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 12 {D1926R:G -> D1944R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {D1944R:A -> D1926R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {D1944R:A -> D1945R:G: adjacent_5p upward } 0 15 {D1945R:G -> D1944R:A: adjacent_3p downward } 0 16 {D1945R:G -> D1946R:A: adjacent_5p } 0 17 {D1946R:A -> D1945R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C943R:A 0 1 C944R:G 0 2 C945R:G 0 3 C921R:G 0 4 C922R:A 0 5 C923R:G 0 6 C924R:C 0 7 C925R:G 0 [Edges] 0 {C921R:G -> C922R:A: adjacent_5p upward } 0 1 {C922R:A -> C921R:G: adjacent_3p downward } 0 2 {C921R:G -> C945R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {C945R:G -> C921R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {C922R:A -> C923R:G: adjacent_5p upward } 0 5 {C923R:G -> C922R:A: adjacent_3p downward } 0 6 {C923R:G -> C924R:C: adjacent_5p upward } 0 7 {C924R:C -> C923R:G: adjacent_3p downward } 0 8 {C924R:C -> C925R:G: adjacent_5p upward } 0 9 {C925R:G -> C924R:C: adjacent_3p downward } 0 10 {C925R:G -> C943R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {C943R:A -> C925R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {C943R:A -> C944R:G: adjacent_5p upward } 0 13 {C944R:G -> C943R:A: adjacent_3p downward } 0 14 {C944R:G -> C945R:G: adjacent_5p } 0 15 {C945R:G -> C944R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 C951R:G 0 1 C952R:G 0 2 C953R:U 0 3 C957R:A 0 4 C958R:G 0 5 C959R:U 0 6 C960R:C 0 7 C961R:C 0 [Edges] 0 {C951R:G -> C952R:G: adjacent_5p upward } 0 1 {C952R:G -> C951R:G: adjacent_3p downward } 0 2 {C951R:G -> C961R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C961R:C -> C951R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C952R:G -> C953R:U: adjacent_5p upward } 0 5 {C953R:U -> C952R:G: adjacent_3p downward } 0 6 {C952R:G -> C960R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C960R:C -> C952R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C953R:U -> C957R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {C957R:A -> C953R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {C957R:A -> C958R:G: adjacent_5p } 0 11 {C958R:G -> C957R:A: adjacent_3p } 0 12 {C957R:A -> C960R:C: upward } 0 13 {C960R:C -> C957R:A: downward } 0 14 {C958R:G -> C959R:U: adjacent_5p outward } 0 15 {C959R:U -> C958R:G: adjacent_3p outward } 0 16 {C959R:U -> C960R:C: adjacent_5p } 0 17 {C960R:C -> C959R:U: adjacent_3p } 0 18 {C960R:C -> C961R:C: adjacent_5p } 0 19 {C961R:C -> C960R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D943R:A 0 1 D944R:G 0 2 D945R:G 0 3 D921R:G 0 4 D922R:A 0 5 D923R:G 0 6 D924R:C 0 7 D925R:G 0 [Edges] 0 {D921R:G -> D922R:A: adjacent_5p upward } 0 1 {D922R:A -> D921R:G: adjacent_3p downward } 0 2 {D921R:G -> D945R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {D945R:G -> D921R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {D922R:A -> D923R:G: adjacent_5p upward } 0 5 {D923R:G -> D922R:A: adjacent_3p downward } 0 6 {D923R:G -> D924R:C: adjacent_5p upward } 0 7 {D924R:C -> D923R:G: adjacent_3p downward } 0 8 {D924R:C -> D925R:G: adjacent_5p upward } 0 9 {D925R:G -> D924R:C: adjacent_3p downward } 0 10 {D925R:G -> D943R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {D943R:A -> D925R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {D943R:A -> D944R:G: adjacent_5p upward } 0 13 {D944R:G -> D943R:A: adjacent_3p downward } 0 14 {D944R:G -> D945R:G: adjacent_5p } 0 15 {D945R:G -> D944R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B545R:A 0 1 B546R:U 0 2 B547R:G 0 3 B523R:G 0 4 B524R:A 0 5 B525R:A 0 6 B526R:C 0 7 B527R:G 0 [Edges] 0 {B523R:G -> B524R:A: adjacent_5p upward } 0 1 {B524R:A -> B523R:G: adjacent_3p downward } 0 2 {B523R:G -> B547R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {B547R:G -> B523R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {B524R:A -> B525R:A: adjacent_5p upward } 0 5 {B525R:A -> B524R:A: adjacent_3p downward } 0 6 {B525R:A -> B526R:C: adjacent_5p upward } 0 7 {B526R:C -> B525R:A: adjacent_3p downward } 0 8 {B525R:A -> B546R:U: pairing antiparallel trans one_hbond 52 Hw/Wh } 0 9 {B546R:U -> B525R:A: pairing antiparallel trans one_hbond 52 Wh/Hw } 0 10 {B526R:C -> B527R:G: adjacent_5p upward } 0 11 {B527R:G -> B526R:C: adjacent_3p downward } 0 12 {B527R:G -> B545R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {B545R:A -> B527R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {B545R:A -> B546R:U: adjacent_5p upward } 0 15 {B546R:U -> B545R:A: adjacent_3p downward } 0 16 {B546R:U -> B547R:G: adjacent_5p } 0 17 {B547R:G -> B546R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . 9 . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . 8 . . 5 . 6 . 6 . . . . . 7 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 B553R:G 0 1 B554R:G 0 2 B555R:U 0 3 B559R:A 0 4 B560R:A 0 5 B561R:U 0 6 B562R:C 0 7 B563R:C 0 [Edges] 0 {B553R:G -> B554R:G: adjacent_5p upward } 0 1 {B554R:G -> B553R:G: adjacent_3p downward } 0 2 {B553R:G -> B563R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B563R:C -> B553R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B554R:G -> B555R:U: adjacent_5p upward } 0 5 {B555R:U -> B554R:G: adjacent_3p downward } 0 6 {B554R:G -> B562R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B562R:C -> B554R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B555R:U -> B559R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {B559R:A -> B555R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {B559R:A -> B560R:A: adjacent_5p } 0 11 {B560R:A -> B559R:A: adjacent_3p } 0 12 {B559R:A -> B562R:C: upward } 0 13 {B562R:C -> B559R:A: downward } 0 14 {B560R:A -> B561R:U: adjacent_5p upward } 0 15 {B561R:U -> B560R:A: adjacent_3p downward } 0 16 {B561R:U -> B562R:C: adjacent_5p } 0 17 {B562R:C -> B561R:U: adjacent_3p } 0 18 {B562R:C -> B563R:C: adjacent_5p } 0 19 {B563R:C -> B562R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A16R:A 0 1 A17R:C 0 2 A18R:G 0 3 A6R:U 0 4 A7R:G 0 5 A8R:A 0 6 A9R:A 0 7 A10R:G 0 [Edges] 0 {A6R:U -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A7R:G -> A8R:A: adjacent_5p } 0 5 {A8R:A -> A7R:G: adjacent_3p } 0 6 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A18R:G: outward } 0 9 {A18R:G -> A7R:G: outward } 0 10 {A8R:A -> A9R:A: adjacent_5p upward } 0 11 {A9R:A -> A8R:A: adjacent_3p downward } 0 12 {A9R:A -> A10R:G: adjacent_5p upward } 0 13 {A10R:G -> A9R:A: adjacent_3p downward } 0 14 {A10R:G -> A16R:A: pairing parallel cis one_hbond Ss/Wh } 0 15 {A16R:A -> A10R:G: pairing parallel cis one_hbond Wh/Ss } 0 16 {A16R:A -> A17R:C: adjacent_5p } 0 17 {A17R:C -> A16R:A: adjacent_3p } 0 18 {A17R:C -> A18R:G: adjacent_5p } 0 19 {A18R:G -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . 7 . . . 2 . 19 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . . . . 5 . 10 . 6 . . . . . 11 . 12 7 14 . . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A17R:G 0 4 A18R:A 0 5 A19R:A 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A17R:G -> A18R:A: adjacent_5p } 0 11 {A18R:A -> A17R:G: adjacent_3p } 0 12 {A18R:A -> A19R:A: adjacent_5p upward } 0 13 {A19R:A -> A18R:A: adjacent_3p downward } 0 14 {A19R:A -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:A: adjacent_3p downward } 0 16 {A20R:G -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:U 0 3 A16R:A 0 4 A17R:G 0 5 A18R:A 0 6 A19R:A 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A16R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A16R:A -> A17R:G: adjacent_5p upward } 0 11 {A17R:G -> A16R:A: adjacent_3p downward } 0 12 {A17R:G -> A18R:A: adjacent_5p } 0 13 {A18R:A -> A17R:G: adjacent_3p } 0 14 {A18R:A -> A19R:A: adjacent_5p upward } 0 15 {A19R:A -> A18R:A: adjacent_3p downward } 0 16 {A19R:A -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:G 0 3 B31R:G 0 4 B32R:U 0 5 B33R:A 0 6 B34R:G 0 7 B35R:G 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B35R:G: pairing parallel cis VI Ww/Hh } 0 3 {B35R:G -> A12R:G: pairing parallel cis VI Hh/Ww } 0 4 {A13R:C -> A14R:G: adjacent_5p } 0 5 {A14R:G -> A13R:C: adjacent_3p } 0 6 {A14R:G -> B31R:G: pairing antiparallel cis one_hbond Ss/Ww } 0 7 {B31R:G -> A14R:G: pairing antiparallel cis one_hbond Ww/Ss } 0 8 {B31R:G -> B32R:U: adjacent_5p } 0 9 {B32R:U -> B31R:G: adjacent_3p } 0 10 {B32R:U -> B33R:A: adjacent_5p } 0 11 {B33R:A -> B32R:U: adjacent_3p } 0 12 {B33R:A -> B34R:G: adjacent_5p } 0 13 {B34R:G -> B33R:A: adjacent_3p } 0 14 {B34R:G -> B35R:G: adjacent_5p } 0 15 {B35R:G -> B34R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 B37R:C 0 1 B38R:G 0 2 B39R:C 0 3 A6R:G 0 4 A7R:A 0 5 A8R:A 0 6 A9R:G 0 7 A10R:G 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B39R:C: pairing antiparallel cis Ww/Ww } 0 3 {B39R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 4 {A7R:A -> A8R:A: adjacent_5p } 0 5 {A8R:A -> A7R:A: adjacent_3p } 0 6 {A8R:A -> A9R:G: adjacent_5p } 0 7 {A9R:G -> A8R:A: adjacent_3p } 0 8 {A9R:G -> A10R:G: adjacent_5p } 0 9 {A10R:G -> A9R:G: adjacent_3p } 0 10 {A10R:G -> B37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B37R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B37R:C -> B38R:G: adjacent_5p upward } 0 13 {B38R:G -> B37R:C: adjacent_3p downward } 0 14 {B38R:G -> B39R:C: adjacent_5p upward } 0 15 {B39R:C -> B38R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B37R:C 0 1 B38R:G 0 2 B39R:C 0 3 A6R:G 0 4 A7R:A 0 5 A8R:A 0 6 A9R:G 0 7 A10R:G 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B39R:C: pairing antiparallel cis Ww/Ww } 0 3 {B39R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 4 {A7R:A -> A8R:A: adjacent_5p } 0 5 {A8R:A -> A7R:A: adjacent_3p } 0 6 {A8R:A -> A9R:G: adjacent_5p } 0 7 {A9R:G -> A8R:A: adjacent_3p } 0 8 {A9R:G -> A10R:G: adjacent_5p } 0 9 {A10R:G -> A9R:G: adjacent_3p } 0 10 {A10R:G -> B37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B37R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B37R:C -> B38R:G: adjacent_5p upward } 0 13 {B38R:G -> B37R:C: adjacent_3p downward } 0 14 {B38R:G -> B39R:C: adjacent_5p upward } 0 15 {B39R:C -> B38R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A22R:A 0 1 A23R:C 0 2 A24R:G 0 3 A7R:C 0 4 A8R:A 0 5 A9R:A 0 6 A10R:U 0 7 A11R:G 0 [Edges] 0 {A7R:C -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:A: adjacent_5p inward } 0 5 {A9R:A -> A8R:A: adjacent_3p inward } 0 6 {A9R:A -> A10R:U: adjacent_5p } 0 7 {A10R:U -> A9R:A: adjacent_3p } 0 8 {A9R:A -> A11R:G: outward } 0 9 {A11R:G -> A9R:A: outward } 0 10 {A9R:A -> A23R:C: pairing parallel trans XXVI Ww/Ww } 0 11 {A23R:C -> A9R:A: pairing parallel trans XXVI Ww/Ww } 0 12 {A10R:U -> A11R:G: adjacent_5p } 0 13 {A11R:G -> A10R:U: adjacent_3p } 0 14 {A11R:G -> A22R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A22R:A -> A11R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A22R:A -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:A: adjacent_3p downward } 0 18 {A23R:C -> A24R:G: adjacent_5p } 0 19 {A24R:G -> A23R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . 11 . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . 10 . . 5 . 6 8 6 . . . . . 7 . 12 7 14 . . . . 9 13 . MOLECULE: [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:C 0 2 B8R:C 0 3 B13R:G 0 4 B14R:G 0 5 B15R:C 0 6 B16R:U 0 7 B17R:A 0 [Edges] 0 {B6R:G -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:G -> B17R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 5 {B17R:A -> B6R:G: pairing antiparallel cis one_hbond Bs/Ss } 0 6 {B7R:C -> B8R:C: adjacent_5p upward } 0 7 {B8R:C -> B7R:C: adjacent_3p downward } 0 8 {B7R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B8R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B13R:G -> B14R:G: adjacent_5p upward } 0 13 {B14R:G -> B13R:G: adjacent_3p downward } 0 14 {B14R:G -> B15R:C: adjacent_5p upward } 0 15 {B15R:C -> B14R:G: adjacent_3p downward } 0 16 {B15R:C -> B16R:U: adjacent_5p upward } 0 17 {B16R:U -> B15R:C: adjacent_3p downward } 0 18 {B16R:U -> B17R:A: adjacent_5p } 0 19 {B17R:A -> B16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . . 5 3 . . . 15 . 16 . 6 . . . . . 17 . 18 7 5 . . . . . 19 . [GraphModel] [Vertices] 0 B18R:G 0 1 B19R:A 0 2 B20R:C 0 3 B49R:G 0 4 B50R:U 0 5 B51R:G 0 6 B52R:A 0 7 B53R:C 0 [Edges] 0 {B18R:G -> B19R:A: adjacent_5p upward } 0 1 {B19R:A -> B18R:G: adjacent_3p downward } 0 2 {B18R:G -> B52R:A: outward } 0 3 {B52R:A -> B18R:G: outward } 0 4 {B18R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {B53R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {B19R:A -> B20R:C: adjacent_5p upward } 0 7 {B20R:C -> B19R:A: adjacent_3p downward } 0 8 {B19R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B50R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B20R:C -> B49R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B49R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B49R:G -> B50R:U: adjacent_5p upward } 0 13 {B50R:U -> B49R:G: adjacent_3p downward } 0 14 {B50R:U -> B51R:G: adjacent_5p upward } 0 15 {B51R:G -> B50R:U: adjacent_3p downward } 0 16 {B51R:G -> B52R:A: adjacent_5p } 0 17 {B52R:A -> B51R:G: adjacent_3p } 0 18 {B52R:A -> B53R:C: adjacent_5p } 0 19 {B53R:C -> B52R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . . 5 . . . . 15 . 16 . 6 3 . . . . 17 . 18 7 5 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A27R:A 0 1 A28R:U 0 2 A29R:G 0 3 A42R:C 0 4 A43R:A 0 5 A44R:C 0 6 A45R:G 0 7 A46R:U 0 [Edges] 0 {A27R:A -> A28R:U: adjacent_5p upward } 0 1 {A28R:U -> A27R:A: adjacent_3p downward } 0 2 {A27R:A -> A46R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A46R:U -> A27R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A28R:U -> A29R:G: adjacent_5p } 0 5 {A29R:G -> A28R:U: adjacent_3p } 0 6 {A28R:U -> A45R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A45R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A29R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A42R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A29R:G -> A45R:G: outward } 0 11 {A45R:G -> A29R:G: outward } 0 12 {A42R:C -> A43R:A: adjacent_5p } 0 13 {A43R:A -> A42R:C: adjacent_3p } 0 14 {A43R:A -> A44R:C: adjacent_5p } 0 15 {A44R:C -> A43R:A: adjacent_3p } 0 16 {A44R:C -> A45R:G: adjacent_5p } 0 17 {A45R:G -> A44R:C: adjacent_3p } 0 18 {A45R:G -> A46R:U: adjacent_5p upward } 0 19 {A46R:U -> A45R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A28R:U 0 1 A29R:G 0 2 A30R:C 0 3 A41R:G 0 4 A42R:C 0 5 A43R:A 0 6 A44R:C 0 7 A45R:G 0 [Edges] 0 {A28R:U -> A29R:G: adjacent_5p } 0 1 {A29R:G -> A28R:U: adjacent_3p } 0 2 {A28R:U -> A45R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A45R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A29R:G -> A30R:C: adjacent_5p upward } 0 5 {A30R:C -> A29R:G: adjacent_3p downward } 0 6 {A29R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A42R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:G -> A45R:G: outward } 0 9 {A45R:G -> A29R:G: outward } 0 10 {A30R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A41R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A41R:G -> A42R:C: adjacent_5p upward } 0 13 {A42R:C -> A41R:G: adjacent_3p downward } 0 14 {A42R:C -> A43R:A: adjacent_5p } 0 15 {A43R:A -> A42R:C: adjacent_3p } 0 16 {A43R:A -> A44R:C: adjacent_5p } 0 17 {A44R:C -> A43R:A: adjacent_3p } 0 18 {A44R:C -> A45R:G: adjacent_5p } 0 19 {A45R:G -> A44R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A53R:C 0 1 A54R:U 0 2 A55R:A 0 3 A16R:U 0 4 A17R:A 0 5 A18R:A 0 6 A19R:G 0 7 A20R:G 0 [Edges] 0 {A16R:U -> A17R:A: adjacent_5p upward } 0 1 {A17R:A -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A55R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A55R:A -> A16R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A17R:A -> A18R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {A18R:A -> A17R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {A17R:A -> A54R:U: inward } 0 7 {A54R:U -> A17R:A: inward } 0 8 {A17R:A -> A55R:A: outward } 0 9 {A55R:A -> A17R:A: outward } 0 10 {A18R:A -> A19R:G: adjacent_5p upward } 0 11 {A19R:G -> A18R:A: adjacent_3p downward } 0 12 {A19R:G -> A20R:G: adjacent_5p upward } 0 13 {A20R:G -> A19R:G: adjacent_3p downward } 0 14 {A19R:G -> A54R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A54R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A20R:G -> A53R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {A53R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A53R:C -> A54R:U: adjacent_5p upward } 0 19 {A54R:U -> A53R:C: adjacent_3p downward } 0 20 {A54R:U -> A55R:A: adjacent_5p } 0 21 {A55R:A -> A54R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . 7 . 15 . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . . . . 5 . 10 . 6 . 14 . . . 11 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 A60R:C 0 1 A61R:G 0 2 A62R:G 0 3 A8R:U 0 4 A9R:A 0 5 A10R:U 0 6 A11R:C 0 7 A12R:G 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A62R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A62R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A9R:A -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:A: adjacent_3p downward } 0 6 {A10R:U -> A11R:C: adjacent_5p } 0 7 {A11R:C -> A10R:U: adjacent_3p } 0 8 {A11R:C -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A61R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> A60R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A60R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> A61R:G: outward } 0 15 {A61R:G -> A12R:G: outward } 0 16 {A60R:C -> A61R:G: adjacent_5p upward } 0 17 {A61R:G -> A60R:C: adjacent_3p downward } 0 18 {A61R:G -> A62R:G: adjacent_5p upward } 0 19 {A62R:G -> A61R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . . . 11 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 14 . . . . 9 . [GraphModel] [Vertices] 0 A61R:G 0 1 A62R:G 0 2 A63R:G 0 3 A7R:C 0 4 A8R:U 0 5 A9R:A 0 6 A10R:U 0 7 A11R:C 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A63R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:A: adjacent_5p } 0 5 {A9R:A -> A8R:U: adjacent_3p } 0 6 {A8R:U -> A62R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A62R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A9R:A -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:A: adjacent_3p downward } 0 10 {A10R:U -> A11R:C: adjacent_5p } 0 11 {A11R:C -> A10R:U: adjacent_3p } 0 12 {A11R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A61R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A61R:G -> A62R:G: adjacent_5p upward } 0 15 {A62R:G -> A61R:G: adjacent_3p downward } 0 16 {A62R:G -> A63R:G: adjacent_5p upward } 0 17 {A63R:G -> A62R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:G 0 2 C22R:G 0 3 C7R:U 0 4 C8R:U 0 5 C9R:A 0 6 C10R:C 0 7 C11R:U 0 [Edges] 0 {C7R:U -> C8R:U: adjacent_5p } 0 1 {C8R:U -> C7R:U: adjacent_3p } 0 2 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C8R:U -> C9R:A: adjacent_5p } 0 5 {C9R:A -> C8R:U: adjacent_3p } 0 6 {C9R:A -> C10R:C: adjacent_5p upward } 0 7 {C10R:C -> C9R:A: adjacent_3p downward } 0 8 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {C10R:C -> C11R:U: adjacent_5p upward } 0 11 {C11R:U -> C10R:C: adjacent_3p downward } 0 12 {C10R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C21R:G -> C10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C11R:U -> C20R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {C20R:A -> C11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {C20R:A -> C21R:G: adjacent_5p upward } 0 17 {C21R:G -> C20R:A: adjacent_3p downward } 0 18 {C21R:G -> C22R:G: adjacent_5p upward } 0 19 {C22R:G -> C21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 3 . 9 . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . 8 . 5 . 6 . 6 . 12 . . . 7 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 C21R:G 0 1 C22R:G 0 2 C23R:C 0 3 C6R:G 0 4 C7R:U 0 5 C8R:U 0 6 C9R:A 0 7 C10R:C 0 [Edges] 0 {C6R:G -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:G: adjacent_3p downward } 0 2 {C6R:G -> C23R:C: pairing antiparallel cis Ww/Ww } 0 3 {C23R:C -> C6R:G: pairing antiparallel cis Ww/Ww } 0 4 {C7R:U -> C8R:U: adjacent_5p } 0 5 {C8R:U -> C7R:U: adjacent_3p } 0 6 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C8R:U -> C9R:A: adjacent_5p } 0 9 {C9R:A -> C8R:U: adjacent_3p } 0 10 {C9R:A -> C10R:C: adjacent_5p upward } 0 11 {C10R:C -> C9R:A: adjacent_3p downward } 0 12 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {C10R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C21R:G -> C10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C21R:G -> C22R:G: adjacent_5p upward } 0 17 {C22R:G -> C21R:G: adjacent_3p downward } 0 18 {C22R:G -> C23R:C: adjacent_5p upward } 0 19 {C23R:C -> C22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . 7 . 13 . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 C22R:G 0 1 C23R:C 0 2 C24R:A 0 3 C5R:U 0 4 C6R:G 0 5 C7R:U 0 6 C8R:U 0 7 C9R:A 0 [Edges] 0 {C5R:U -> C6R:G: adjacent_5p } 0 1 {C6R:G -> C5R:U: adjacent_3p } 0 2 {C5R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C24R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C6R:G -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:G: adjacent_3p downward } 0 6 {C6R:G -> C23R:C: pairing antiparallel cis Ww/Ww } 0 7 {C23R:C -> C6R:G: pairing antiparallel cis Ww/Ww } 0 8 {C6R:G -> C24R:A: outward } 0 9 {C24R:A -> C6R:G: outward } 0 10 {C7R:U -> C8R:U: adjacent_5p } 0 11 {C8R:U -> C7R:U: adjacent_3p } 0 12 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C8R:U -> C9R:A: adjacent_5p } 0 15 {C9R:A -> C8R:U: adjacent_3p } 0 16 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 17 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 18 {C22R:G -> C23R:C: adjacent_5p upward } 0 19 {C23R:C -> C22R:G: adjacent_3p downward } 0 20 {C23R:C -> C24R:A: adjacent_5p upward } 0 21 {C24R:A -> C23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 13 . 17 1 19 . 20 . 7 . . . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 12 . . . 5 . 10 . 6 . . . . . 11 . 14 7 16 . . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A246R:A 0 1 A247R:U 0 2 A248R:A 0 3 A224R:U 0 4 A225R:A 0 5 A226R:A 0 6 A227R:G 0 7 A228R:U 0 [Edges] 0 {A224R:U -> A225R:A: adjacent_5p } 0 1 {A225R:A -> A224R:U: adjacent_3p } 0 2 {A224R:U -> A248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A248R:A -> A224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A225R:A -> A226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {A226R:A -> A225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {A225R:A -> A247R:U: inward } 0 7 {A247R:U -> A225R:A: inward } 0 8 {A225R:A -> A248R:A: outward } 0 9 {A248R:A -> A225R:A: outward } 0 10 {A226R:A -> A227R:G: adjacent_5p upward } 0 11 {A227R:G -> A226R:A: adjacent_3p downward } 0 12 {A227R:G -> A228R:U: adjacent_5p upward } 0 13 {A228R:U -> A227R:G: adjacent_3p downward } 0 14 {A227R:G -> A247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A247R:U -> A227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A228R:U -> A246R:A: pairing antiparallel cis XX Ww/Ww } 0 17 {A246R:A -> A228R:U: pairing antiparallel cis XX Ww/Ww } 0 18 {A246R:A -> A247R:U: adjacent_5p upward } 0 19 {A247R:U -> A246R:A: adjacent_3p downward } 0 20 {A247R:U -> A248R:A: adjacent_5p } 0 21 {A248R:A -> A247R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . 7 . 15 . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . . . . 5 . 10 . 6 . 14 . . . 11 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 A249R:U 0 1 A250R:G 0 2 A251R:G 0 3 A222R:C 0 4 A223R:C 0 5 A224R:U 0 6 A225R:A 0 7 A226R:A 0 [Edges] 0 {A222R:C -> A223R:C: adjacent_5p upward } 0 1 {A223R:C -> A222R:C: adjacent_3p downward } 0 2 {A222R:C -> A251R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A251R:G -> A222R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A223R:C -> A224R:U: adjacent_5p upward } 0 5 {A224R:U -> A223R:C: adjacent_3p downward } 0 6 {A223R:C -> A250R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A250R:G -> A223R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A224R:U -> A225R:A: adjacent_5p } 0 9 {A225R:A -> A224R:U: adjacent_3p } 0 10 {A225R:A -> A226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 11 {A226R:A -> A225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 12 {A226R:A -> A249R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A249R:U -> A226R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A249R:U -> A250R:G: adjacent_5p } 0 15 {A250R:G -> A249R:U: adjacent_3p } 0 16 {A250R:G -> A251R:G: adjacent_5p upward } 0 17 {A251R:G -> A250R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 B246R:A 0 1 B247R:U 0 2 B248R:A 0 3 B224R:U 0 4 B225R:A 0 5 B226R:A 0 6 B227R:G 0 7 B228R:U 0 [Edges] 0 {B224R:U -> B225R:A: adjacent_5p } 0 1 {B225R:A -> B224R:U: adjacent_3p } 0 2 {B224R:U -> B248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {B248R:A -> B224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {B225R:A -> B226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {B226R:A -> B225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {B225R:A -> B247R:U: inward } 0 7 {B247R:U -> B225R:A: inward } 0 8 {B225R:A -> B248R:A: outward } 0 9 {B248R:A -> B225R:A: outward } 0 10 {B226R:A -> B227R:G: adjacent_5p upward } 0 11 {B227R:G -> B226R:A: adjacent_3p downward } 0 12 {B227R:G -> B228R:U: adjacent_5p upward } 0 13 {B228R:U -> B227R:G: adjacent_3p downward } 0 14 {B227R:G -> B247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B247R:U -> B227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B228R:U -> B246R:A: pairing antiparallel cis XX Ww/Ww } 0 17 {B246R:A -> B228R:U: pairing antiparallel cis XX Ww/Ww } 0 18 {B246R:A -> B247R:U: adjacent_5p upward } 0 19 {B247R:U -> B246R:A: adjacent_3p downward } 0 20 {B247R:U -> B248R:A: adjacent_5p } 0 21 {B248R:A -> B247R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . 7 . 15 . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . . . . 5 . 10 . 6 . 14 . . . 11 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 B249R:U 0 1 B250R:G 0 2 B251R:G 0 3 B222R:C 0 4 B223R:C 0 5 B224R:U 0 6 B225R:A 0 7 B226R:A 0 [Edges] 0 {B222R:C -> B223R:C: adjacent_5p upward } 0 1 {B223R:C -> B222R:C: adjacent_3p downward } 0 2 {B222R:C -> B251R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B251R:G -> B222R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B223R:C -> B224R:U: adjacent_5p upward } 0 5 {B224R:U -> B223R:C: adjacent_3p downward } 0 6 {B223R:C -> B250R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B250R:G -> B223R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B224R:U -> B225R:A: adjacent_5p } 0 9 {B225R:A -> B224R:U: adjacent_3p } 0 10 {B225R:A -> B226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 11 {B226R:A -> B225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 12 {B226R:A -> B249R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B249R:U -> B226R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B249R:U -> B250R:G: adjacent_5p } 0 15 {B250R:G -> B249R:U: adjacent_3p } 0 16 {B250R:G -> B251R:G: adjacent_5p upward } 0 17 {B251R:G -> B250R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 B215R:A 0 1 B216R:A 0 2 B217R:C 0 3 B180R:G 0 4 B181R:U 0 5 B182R:G 0 6 B183R:A 0 7 B184R:A 0 [Edges] 0 {B180R:G -> B181R:U: adjacent_5p upward } 0 1 {B181R:U -> B180R:G: adjacent_3p downward } 0 2 {B180R:G -> B217R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B217R:C -> B180R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B181R:U -> B182R:G: adjacent_5p } 0 5 {B182R:G -> B181R:U: adjacent_3p } 0 6 {B181R:U -> B216R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B216R:A -> B181R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B182R:G -> B183R:A: adjacent_5p } 0 9 {B183R:A -> B182R:G: adjacent_3p } 0 10 {B183R:A -> B184R:A: adjacent_5p } 0 11 {B184R:A -> B183R:A: adjacent_3p } 0 12 {B184R:A -> B215R:A: pairing antiparallel trans one_hbond Ww/C8 } 0 13 {B215R:A -> B184R:A: pairing antiparallel trans one_hbond C8/Ww } 0 14 {B215R:A -> B216R:A: adjacent_5p outward } 0 15 {B216R:A -> B215R:A: adjacent_3p outward } 0 16 {B216R:A -> B217R:C: adjacent_5p upward } 0 17 {B217R:C -> B216R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 23R:G 0 1 24R:G 0 2 25R:A 0 3 6R:C 0 4 7R:G 0 5 8R:A 0 6 9R:G 0 7 10R:C 0 [Edges] 0 {6R:C -> 7R:G: adjacent_5p } 0 1 {7R:G -> 6R:C: adjacent_3p } 0 2 {6R:C -> 25R:A: pairing antiparallel cis 75 Ww/Ww } 0 3 {25R:A -> 6R:C: pairing antiparallel cis 75 Ww/Ww } 0 4 {7R:G -> 8R:A: adjacent_5p } 0 5 {8R:A -> 7R:G: adjacent_3p } 0 6 {8R:A -> 9R:G: adjacent_5p } 0 7 {9R:G -> 8R:A: adjacent_3p } 0 8 {9R:G -> 10R:C: adjacent_5p } 0 9 {10R:C -> 9R:G: adjacent_3p } 0 10 {10R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {23R:G -> 10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {23R:G -> 24R:G: adjacent_5p } 0 13 {24R:G -> 23R:G: adjacent_3p } 0 14 {24R:G -> 25R:A: adjacent_5p } 0 15 {25R:A -> 24R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 A8R:U 0 3 B2R:A 0 4 B3R:C 0 5 B4R:U 0 6 B5R:A 0 7 B6R:A 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> B6R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 5 {B6R:A -> A6R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 6 {A7R:G -> A8R:U: adjacent_5p upward } 0 7 {A8R:U -> A7R:G: adjacent_3p downward } 0 8 {A7R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B3R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A8R:U -> B2R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B2R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B2R:A -> B3R:C: adjacent_5p upward } 0 13 {B3R:C -> B2R:A: adjacent_3p downward } 0 14 {B3R:C -> B4R:U: adjacent_5p } 0 15 {B4R:U -> B3R:C: adjacent_3p } 0 16 {B4R:U -> B5R:A: adjacent_5p } 0 17 {B5R:A -> B4R:U: adjacent_3p } 0 18 {B5R:A -> B6R:A: adjacent_5p } 0 19 {B6R:A -> B5R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . . 5 3 . . . 15 . 16 . 6 . . . . . 17 . 18 7 5 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B22R:A 0 1 B23R:A 0 2 B24R:A 0 3 B57R:A 0 4 B58R:U 0 5 B59R:A 0 6 B60R:U 0 7 B61R:U 0 [Edges] 0 {B22R:A -> B23R:A: adjacent_5p upward } 0 1 {B23R:A -> B22R:A: adjacent_3p downward } 0 2 {B22R:A -> B60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {B60R:U -> B22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 5 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 6 {B23R:A -> B24R:A: adjacent_5p upward } 0 7 {B24R:A -> B23R:A: adjacent_3p downward } 0 8 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 9 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 10 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {B24R:A -> B57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 13 {B57R:A -> B24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 14 {B57R:A -> B58R:U: adjacent_5p } 0 15 {B58R:U -> B57R:A: adjacent_3p } 0 16 {B57R:A -> B59R:A: upward } 0 17 {B59R:A -> B57R:A: downward } 0 18 {B58R:U -> B59R:A: adjacent_5p } 0 19 {B59R:A -> B58R:U: adjacent_3p } 0 20 {B59R:A -> B60R:U: adjacent_5p upward } 0 21 {B60R:U -> B59R:A: adjacent_3p downward } 0 22 {B60R:U -> B61R:U: adjacent_5p } 0 23 {B61R:U -> B60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . 8 . 10 2 . 7 . 12 . . . . 3 . . 13 . 14 16 . . 4 . . . 15 . 18 . . 5 . 9 . 17 19 . 20 . 6 3 . . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 E22R:A 0 1 E23R:A 0 2 E24R:A 0 3 E57R:A 0 4 E58R:U 0 5 E59R:A 0 6 E60R:U 0 7 E61R:U 0 [Edges] 0 {E22R:A -> E23R:A: adjacent_5p upward } 0 1 {E23R:A -> E22R:A: adjacent_3p downward } 0 2 {E22R:A -> E60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {E60R:U -> E22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 5 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 6 {E23R:A -> E24R:A: adjacent_5p upward } 0 7 {E24R:A -> E23R:A: adjacent_3p downward } 0 8 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 9 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 10 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E24R:A -> E57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 13 {E57R:A -> E24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 14 {E57R:A -> E58R:U: adjacent_5p } 0 15 {E58R:U -> E57R:A: adjacent_3p } 0 16 {E57R:A -> E59R:A: upward } 0 17 {E59R:A -> E57R:A: downward } 0 18 {E58R:U -> E59R:A: adjacent_5p } 0 19 {E59R:A -> E58R:U: adjacent_3p } 0 20 {E59R:A -> E60R:U: adjacent_5p upward } 0 21 {E60R:U -> E59R:A: adjacent_3p downward } 0 22 {E60R:U -> E61R:U: adjacent_5p } 0 23 {E61R:U -> E60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . 8 . 10 2 . 7 . 12 . . . . 3 . . 13 . 14 16 . . 4 . . . 15 . 18 . . 5 . 9 . 17 19 . 20 . 6 3 . . . . 21 . 22 7 5 11 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:G 0 3 A26R:G 0 4 A27R:G 0 5 A28R:A 0 6 A29R:C 0 7 A30R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:G: adjacent_3p } 0 6 {A12R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A30R:G: outward } 0 9 {A30R:G -> A12R:G: outward } 0 10 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 11 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 12 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {A26R:G -> A27R:G: adjacent_5p } 0 15 {A27R:G -> A26R:G: adjacent_3p } 0 16 {A27R:G -> A28R:A: adjacent_5p } 0 17 {A28R:A -> A27R:G: adjacent_3p } 0 18 {A28R:A -> A29R:C: adjacent_5p } 0 19 {A29R:C -> A28R:A: adjacent_3p } 0 20 {A29R:C -> A30R:G: adjacent_5p } 0 21 {A30R:G -> A29R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:C 0 3 A25R:G 0 4 A26R:G 0 5 A27R:G 0 6 A28R:A 0 7 A29R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:G: adjacent_3p } 0 2 {A12R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 7 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 8 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 13 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 14 {A25R:G -> A26R:G: adjacent_5p upward } 0 15 {A26R:G -> A25R:G: adjacent_3p downward } 0 16 {A26R:G -> A27R:G: adjacent_5p } 0 17 {A27R:G -> A26R:G: adjacent_3p } 0 18 {A27R:G -> A28R:A: adjacent_5p } 0 19 {A28R:A -> A27R:G: adjacent_3p } 0 20 {A28R:A -> A29R:C: adjacent_5p } 0 21 {A29R:C -> A28R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 7 13 15 . 16 . . 5 . . . . 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:U 0 3 A24R:A 0 4 A25R:G 0 5 A26R:G 0 6 A27R:G 0 7 A28R:A 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {A14R:C -> A15R:U: adjacent_5p } 0 7 {A15R:U -> A14R:C: adjacent_3p } 0 8 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 11 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 12 {A15R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A24R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:U -> A25R:G: outward } 0 15 {A25R:G -> A15R:U: outward } 0 16 {A24R:A -> A25R:G: adjacent_5p upward } 0 17 {A25R:G -> A24R:A: adjacent_3p downward } 0 18 {A25R:G -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:G: adjacent_3p downward } 0 20 {A26R:G -> A27R:G: adjacent_5p } 0 21 {A27R:G -> A26R:G: adjacent_3p } 0 22 {A27R:G -> A28R:A: adjacent_5p } 0 23 {A28R:A -> A27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 10 . . 2 . 7 . 12 14 . . . 3 . . 13 . 16 . . . 4 . 9 15 17 . 18 . . 5 3 11 . . 19 . 20 . 6 . . . . . 21 . 22 7 5 . . . . . 23 . [GraphModel] [Vertices] 0 A33R:G 0 1 A34R:G 0 2 A35R:G 0 3 A4R:C 0 4 A5R:A 0 5 A6R:G 0 6 A7R:G 0 7 A8R:A 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:G: adjacent_5p inward } 0 5 {A6R:G -> A5R:A: adjacent_3p inward } 0 6 {A6R:G -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:G: adjacent_3p } 0 8 {A6R:G -> A8R:A: outward } 0 9 {A8R:A -> A6R:G: outward } 0 10 {A6R:G -> A34R:G: pairing parallel trans III Ww/Ww } 0 11 {A34R:G -> A6R:G: pairing parallel trans III Ww/Ww } 0 12 {A7R:G -> A8R:A: adjacent_5p } 0 13 {A8R:A -> A7R:G: adjacent_3p } 0 14 {A8R:A -> A33R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A33R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A33R:G -> A34R:G: adjacent_5p upward } 0 17 {A34R:G -> A33R:G: adjacent_3p downward } 0 18 {A34R:G -> A35R:G: adjacent_5p } 0 19 {A35R:G -> A34R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . 11 . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . 10 . . 5 . 6 8 6 . . . . . 7 . 12 7 14 . . . . 9 13 . MOLECULE: [GraphModel] [Vertices] 0 C29R:A 0 1 C30R:C 0 2 C31R:C 0 3 C51R:G 0 4 C52R:A 0 5 C53R:A 0 6 C54R:G 0 7 C55R:U 0 [Edges] 0 {C29R:A -> C30R:C: adjacent_5p upward } 0 1 {C30R:C -> C29R:A: adjacent_3p downward } 0 2 {C29R:A -> C55R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C55R:U -> C29R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C30R:C -> C31R:C: adjacent_5p upward } 0 5 {C31R:C -> C30R:C: adjacent_3p downward } 0 6 {C30R:C -> C54R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C54R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C31R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {C51R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {C51R:G -> C52R:A: adjacent_5p } 0 11 {C52R:A -> C51R:G: adjacent_3p } 0 12 {C52R:A -> C53R:A: adjacent_5p outward } 0 13 {C53R:A -> C52R:A: adjacent_3p outward } 0 14 {C53R:A -> C54R:G: adjacent_5p } 0 15 {C54R:G -> C53R:A: adjacent_3p } 0 16 {C54R:G -> C55R:U: adjacent_5p upward } 0 17 {C55R:U -> C54R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C30R:C 0 1 C31R:C 0 2 C32R:U 0 3 C50R:A 0 4 C51R:G 0 5 C52R:A 0 6 C53R:A 0 7 C54R:G 0 [Edges] 0 {C30R:C -> C31R:C: adjacent_5p upward } 0 1 {C31R:C -> C30R:C: adjacent_3p downward } 0 2 {C30R:C -> C54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C54R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C31R:C -> C32R:U: adjacent_5p upward } 0 5 {C32R:U -> C31R:C: adjacent_3p downward } 0 6 {C31R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C51R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C32R:U -> C50R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C50R:A -> C32R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C50R:A -> C51R:G: adjacent_5p upward } 0 11 {C51R:G -> C50R:A: adjacent_3p downward } 0 12 {C51R:G -> C52R:A: adjacent_5p } 0 13 {C52R:A -> C51R:G: adjacent_3p } 0 14 {C52R:A -> C53R:A: adjacent_5p outward } 0 15 {C53R:A -> C52R:A: adjacent_3p outward } 0 16 {C53R:A -> C54R:G: adjacent_5p } 0 17 {C54R:G -> C53R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D29R:A 0 1 D30R:C 0 2 D31R:C 0 3 D51R:G 0 4 D52R:A 0 5 D53R:A 0 6 D54R:G 0 7 D55R:U 0 [Edges] 0 {D29R:A -> D30R:C: adjacent_5p upward } 0 1 {D30R:C -> D29R:A: adjacent_3p downward } 0 2 {D29R:A -> D55R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D55R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D30R:C -> D31R:C: adjacent_5p upward } 0 5 {D31R:C -> D30R:C: adjacent_3p downward } 0 6 {D30R:C -> D54R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D54R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D31R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D51R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D51R:G -> D52R:A: adjacent_5p } 0 11 {D52R:A -> D51R:G: adjacent_3p } 0 12 {D52R:A -> D53R:A: adjacent_5p upward } 0 13 {D53R:A -> D52R:A: adjacent_3p downward } 0 14 {D53R:A -> D54R:G: adjacent_5p } 0 15 {D54R:G -> D53R:A: adjacent_3p } 0 16 {D54R:G -> D55R:U: adjacent_5p upward } 0 17 {D55R:U -> D54R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D30R:C 0 1 D31R:C 0 2 D32R:U 0 3 D50R:A 0 4 D51R:G 0 5 D52R:A 0 6 D53R:A 0 7 D54R:G 0 [Edges] 0 {D30R:C -> D31R:C: adjacent_5p upward } 0 1 {D31R:C -> D30R:C: adjacent_3p downward } 0 2 {D30R:C -> D54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D54R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D31R:C -> D32R:U: adjacent_5p upward } 0 5 {D32R:U -> D31R:C: adjacent_3p downward } 0 6 {D31R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D51R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D32R:U -> D50R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D50R:A -> D32R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D50R:A -> D51R:G: adjacent_5p upward } 0 11 {D51R:G -> D50R:A: adjacent_3p downward } 0 12 {D51R:G -> D52R:A: adjacent_5p } 0 13 {D52R:A -> D51R:G: adjacent_3p } 0 14 {D52R:A -> D53R:A: adjacent_5p upward } 0 15 {D53R:A -> D52R:A: adjacent_3p downward } 0 16 {D53R:A -> D54R:G: adjacent_5p } 0 17 {D54R:G -> D53R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C1055R:G 0 1 C1056R:G 0 2 C1057R:A 0 3 C1081R:U 0 4 C1082R:U 0 5 C1083R:U 0 6 C1084R:A 0 7 C1085R:A 0 [Edges] 0 {C1055R:G -> C1056R:G: adjacent_5p upward } 0 1 {C1056R:G -> C1055R:G: adjacent_3p downward } 0 2 {C1055R:G -> C1085R:A: pairing parallel trans 57 Ss/Ss } 0 3 {C1085R:A -> C1055R:G: pairing parallel trans 57 Ss/Ss } 0 4 {C1056R:G -> C1057R:A: adjacent_5p } 0 5 {C1057R:A -> C1056R:G: adjacent_3p } 0 6 {C1057R:A -> C1081R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C1081R:U -> C1057R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C1081R:U -> C1082R:U: adjacent_5p upward } 0 9 {C1082R:U -> C1081R:U: adjacent_3p downward } 0 10 {C1082R:U -> C1083R:U: adjacent_5p upward } 0 11 {C1083R:U -> C1082R:U: adjacent_3p downward } 0 12 {C1083R:U -> C1084R:A: adjacent_5p } 0 13 {C1084R:A -> C1083R:U: adjacent_3p } 0 14 {C1084R:A -> C1085R:A: adjacent_5p upward } 0 15 {C1085R:A -> C1084R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 C1100R:C 0 1 C1101R:U 0 2 C1102R:C 0 3 C1087R:G 0 4 C1088R:A 0 5 C1089R:G 0 6 C1090R:U 0 7 C1091R:G 0 [Edges] 0 {C1087R:G -> C1088R:A: adjacent_5p } 0 1 {C1088R:A -> C1087R:G: adjacent_3p } 0 2 {C1087R:G -> C1089R:G: upward } 0 3 {C1089R:G -> C1087R:G: downward } 0 4 {C1087R:G -> C1102R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C1102R:C -> C1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C1088R:A -> C1089R:G: adjacent_5p } 0 7 {C1089R:G -> C1088R:A: adjacent_3p } 0 8 {C1089R:G -> C1090R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {C1090R:U -> C1089R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {C1090R:U -> C1091R:G: adjacent_5p upward } 0 11 {C1091R:G -> C1090R:U: adjacent_3p downward } 0 12 {C1090R:U -> C1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {C1101R:U -> C1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {C1091R:G -> C1100R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C1100R:C -> C1091R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C1100R:C -> C1101R:U: adjacent_5p upward } 0 17 {C1101R:U -> C1100R:C: adjacent_3p downward } 0 18 {C1101R:U -> C1102R:C: adjacent_5p } 0 19 {C1102R:C -> C1101R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 D1055R:G 0 1 D1056R:G 0 2 D1057R:A 0 3 D1081R:U 0 4 D1082R:U 0 5 D1083R:U 0 6 D1084R:A 0 7 D1085R:A 0 [Edges] 0 {D1055R:G -> D1056R:G: adjacent_5p upward } 0 1 {D1056R:G -> D1055R:G: adjacent_3p downward } 0 2 {D1055R:G -> D1085R:A: pairing parallel trans 57 Ss/Ss } 0 3 {D1085R:A -> D1055R:G: pairing parallel trans 57 Ss/Ss } 0 4 {D1056R:G -> D1057R:A: adjacent_5p } 0 5 {D1057R:A -> D1056R:G: adjacent_3p } 0 6 {D1057R:A -> D1081R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D1081R:U -> D1057R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D1081R:U -> D1082R:U: adjacent_5p upward } 0 9 {D1082R:U -> D1081R:U: adjacent_3p downward } 0 10 {D1082R:U -> D1083R:U: adjacent_5p upward } 0 11 {D1083R:U -> D1082R:U: adjacent_3p downward } 0 12 {D1083R:U -> D1084R:A: adjacent_5p } 0 13 {D1084R:A -> D1083R:U: adjacent_3p } 0 14 {D1084R:A -> D1085R:A: adjacent_5p upward } 0 15 {D1085R:A -> D1084R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 D1100R:C 0 1 D1101R:U 0 2 D1102R:C 0 3 D1087R:G 0 4 D1088R:A 0 5 D1089R:G 0 6 D1090R:U 0 7 D1091R:G 0 [Edges] 0 {D1087R:G -> D1088R:A: adjacent_5p } 0 1 {D1088R:A -> D1087R:G: adjacent_3p } 0 2 {D1087R:G -> D1089R:G: upward } 0 3 {D1089R:G -> D1087R:G: downward } 0 4 {D1087R:G -> D1102R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {D1102R:C -> D1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D1088R:A -> D1089R:G: adjacent_5p } 0 7 {D1089R:G -> D1088R:A: adjacent_3p } 0 8 {D1089R:G -> D1090R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {D1090R:U -> D1089R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {D1090R:U -> D1091R:G: adjacent_5p upward } 0 11 {D1091R:G -> D1090R:U: adjacent_3p downward } 0 12 {D1090R:U -> D1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {D1101R:U -> D1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {D1091R:G -> D1100R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1100R:C -> D1091R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1100R:C -> D1101R:U: adjacent_5p upward } 0 17 {D1101R:U -> D1100R:C: adjacent_3p downward } 0 18 {D1101R:U -> D1102R:C: adjacent_5p } 0 19 {D1102R:C -> D1101R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A10R:G 0 4 A11R:G 0 5 A12R:A 0 6 A13R:G 0 7 A14R:G 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p } 0 1 {A3R:A -> A2R:G: adjacent_3p } 0 2 {A2R:G -> A14R:G: pairing parallel cis one_hbond Hh/Ws } 0 3 {A14R:G -> A2R:G: pairing parallel cis one_hbond Ws/Hh } 0 4 {A3R:A -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:A: adjacent_3p } 0 6 {A4R:G -> A10R:G: pairing parallel cis VI Ww/Hh } 0 7 {A10R:G -> A4R:G: pairing parallel cis VI Hh/Ww } 0 8 {A10R:G -> A11R:G: adjacent_5p upward } 0 9 {A11R:G -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> A12R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 11 {A12R:A -> A10R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 12 {A11R:G -> A12R:A: adjacent_5p } 0 13 {A12R:A -> A11R:G: adjacent_3p } 0 14 {A11R:G -> A14R:G: pairing parallel cis one_hbond Ws/Hh } 0 15 {A14R:G -> A11R:G: pairing parallel cis one_hbond Hh/Ws } 0 16 {A12R:A -> A13R:G: adjacent_5p } 0 17 {A13R:G -> A12R:A: adjacent_3p } 0 18 {A13R:G -> A14R:G: adjacent_5p } 0 19 {A14R:G -> A13R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . 14 5 . . . 11 13 . 16 . 6 . . . . . 17 . 18 7 3 . . . 15 . 19 . [GraphModel] [Vertices] 0 B16R:G 0 1 B17R:A 0 2 B18R:G 0 3 B24R:G 0 4 B25R:G 0 5 B26R:A 0 6 B27R:G 0 7 B28R:G 0 [Edges] 0 {B16R:G -> B17R:A: adjacent_5p } 0 1 {B17R:A -> B16R:G: adjacent_3p } 0 2 {B16R:G -> B28R:G: pairing parallel cis one_hbond Hh/Ws } 0 3 {B28R:G -> B16R:G: pairing parallel cis one_hbond Ws/Hh } 0 4 {B17R:A -> B18R:G: adjacent_5p } 0 5 {B18R:G -> B17R:A: adjacent_3p } 0 6 {B18R:G -> B24R:G: pairing parallel cis VI Ww/Hh } 0 7 {B24R:G -> B18R:G: pairing parallel cis VI Hh/Ww } 0 8 {B24R:G -> B25R:G: adjacent_5p upward } 0 9 {B25R:G -> B24R:G: adjacent_3p downward } 0 10 {B24R:G -> B26R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {B26R:A -> B24R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B25R:G -> B26R:A: adjacent_5p } 0 13 {B26R:A -> B25R:G: adjacent_3p } 0 14 {B25R:G -> B28R:G: pairing parallel cis one_hbond Ws/Hh } 0 15 {B28R:G -> B25R:G: pairing parallel cis one_hbond Hh/Ws } 0 16 {B26R:A -> B27R:G: adjacent_5p } 0 17 {B27R:G -> B26R:A: adjacent_3p } 0 18 {B27R:G -> B28R:G: adjacent_5p } 0 19 {B28R:G -> B27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . 14 5 . . . 11 13 . 16 . 6 . . . . . 17 . 18 7 3 . . . 15 . 19 . MOLECULE: [GraphModel] [Vertices] 0 B13R:A 0 1 B14R:U 0 2 B15R:A 0 3 B39R:G 0 4 B40R:A 0 5 B41R:A 0 6 B42R:A 0 7 B43R:U 0 [Edges] 0 {B13R:A -> B14R:U: adjacent_5p } 0 1 {B14R:U -> B13R:A: adjacent_3p } 0 2 {B13R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B43R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B14R:U -> B15R:A: adjacent_5p } 0 5 {B15R:A -> B14R:U: adjacent_3p } 0 6 {B15R:A -> B39R:G: pairing parallel trans X Ww/Ss } 0 7 {B39R:G -> B15R:A: pairing parallel trans X Ss/Ww } 0 8 {B15R:A -> B41R:A: inward } 0 9 {B41R:A -> B15R:A: inward } 0 10 {B15R:A -> B42R:A: outward } 0 11 {B42R:A -> B15R:A: outward } 0 12 {B39R:G -> B40R:A: adjacent_5p } 0 13 {B40R:A -> B39R:G: adjacent_3p } 0 14 {B40R:A -> B41R:A: adjacent_5p upward } 0 15 {B41R:A -> B40R:A: adjacent_3p downward } 0 16 {B41R:A -> B42R:A: adjacent_5p } 0 17 {B42R:A -> B41R:A: adjacent_3p } 0 18 {B42R:A -> B43R:U: adjacent_5p upward } 0 19 {B43R:U -> B42R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B44R:A 0 1 B45R:C 0 2 B46R:C 0 3 B19R:G 0 4 B20R:G 0 5 B21R:G 0 6 B22R:A 0 7 B23R:G 0 [Edges] 0 {B19R:G -> B20R:G: adjacent_5p upward } 0 1 {B20R:G -> B19R:G: adjacent_3p downward } 0 2 {B19R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B46R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B20R:G -> B21R:G: adjacent_5p upward } 0 5 {B21R:G -> B20R:G: adjacent_3p downward } 0 6 {B20R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B45R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B21R:G -> B22R:A: adjacent_5p } 0 9 {B22R:A -> B21R:G: adjacent_3p } 0 10 {B21R:G -> B44R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {B44R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B22R:A -> B23R:G: adjacent_5p } 0 13 {B23R:G -> B22R:A: adjacent_3p } 0 14 {B22R:A -> B44R:A: outward } 0 15 {B44R:A -> B22R:A: outward } 0 16 {B23R:G -> B44R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 17 {B44R:A -> B23R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 18 {B44R:A -> B45R:C: adjacent_5p upward } 0 19 {B45R:C -> B44R:A: adjacent_3p downward } 0 20 {B45R:C -> B46R:C: adjacent_5p upward } 0 21 {B46R:C -> B45R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 14 . . . . 9 . 12 7 16 . . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 C544R:A 0 1 C545R:A 0 2 C546R:A 0 3 C522R:G 0 4 C523R:G 0 5 C524R:A 0 6 C525R:C 0 7 C526R:G 0 [Edges] 0 {C522R:G -> C523R:G: adjacent_5p upward } 0 1 {C523R:G -> C522R:G: adjacent_3p downward } 0 2 {C522R:G -> C546R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {C546R:A -> C522R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {C523R:G -> C524R:A: adjacent_5p upward } 0 5 {C524R:A -> C523R:G: adjacent_3p downward } 0 6 {C524R:A -> C525R:C: adjacent_5p upward } 0 7 {C525R:C -> C524R:A: adjacent_3p downward } 0 8 {C525R:C -> C526R:G: adjacent_5p upward } 0 9 {C526R:G -> C525R:C: adjacent_3p downward } 0 10 {C526R:G -> C544R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {C544R:A -> C526R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {C544R:A -> C545R:A: adjacent_5p upward } 0 13 {C545R:A -> C544R:A: adjacent_3p downward } 0 14 {C545R:A -> C546R:A: adjacent_5p } 0 15 {C546R:A -> C545R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 C552R:G 0 1 C553R:G 0 2 C554R:U 0 3 C558R:A 0 4 C559R:U 0 5 C560R:U 0 6 C561R:C 0 7 C562R:C 0 [Edges] 0 {C552R:G -> C553R:G: adjacent_5p upward } 0 1 {C553R:G -> C552R:G: adjacent_3p downward } 0 2 {C552R:G -> C562R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C562R:C -> C552R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C553R:G -> C554R:U: adjacent_5p upward } 0 5 {C554R:U -> C553R:G: adjacent_3p downward } 0 6 {C553R:G -> C561R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C561R:C -> C553R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C554R:U -> C558R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {C558R:A -> C554R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {C558R:A -> C559R:U: adjacent_5p } 0 11 {C559R:U -> C558R:A: adjacent_3p } 0 12 {C559R:U -> C560R:U: adjacent_5p upward } 0 13 {C560R:U -> C559R:U: adjacent_3p downward } 0 14 {C560R:U -> C561R:C: adjacent_5p } 0 15 {C561R:C -> C560R:U: adjacent_3p } 0 16 {C561R:C -> C562R:C: adjacent_5p } 0 17 {C562R:C -> C561R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D544R:A 0 1 D545R:A 0 2 D546R:A 0 3 D522R:G 0 4 D523R:G 0 5 D524R:A 0 6 D525R:C 0 7 D526R:G 0 [Edges] 0 {D522R:G -> D523R:G: adjacent_5p upward } 0 1 {D523R:G -> D522R:G: adjacent_3p downward } 0 2 {D522R:G -> D546R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {D546R:A -> D522R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {D523R:G -> D524R:A: adjacent_5p upward } 0 5 {D524R:A -> D523R:G: adjacent_3p downward } 0 6 {D524R:A -> D525R:C: adjacent_5p upward } 0 7 {D525R:C -> D524R:A: adjacent_3p downward } 0 8 {D525R:C -> D526R:G: adjacent_5p upward } 0 9 {D526R:G -> D525R:C: adjacent_3p downward } 0 10 {D526R:G -> D544R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {D544R:A -> D526R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {D544R:A -> D545R:A: adjacent_5p upward } 0 13 {D545R:A -> D544R:A: adjacent_3p downward } 0 14 {D545R:A -> D546R:A: adjacent_5p } 0 15 {D546R:A -> D545R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 D552R:G 0 1 D553R:G 0 2 D554R:U 0 3 D558R:A 0 4 D559R:U 0 5 D560R:U 0 6 D561R:C 0 7 D562R:C 0 [Edges] 0 {D552R:G -> D553R:G: adjacent_5p upward } 0 1 {D553R:G -> D552R:G: adjacent_3p downward } 0 2 {D552R:G -> D562R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D562R:C -> D552R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D553R:G -> D554R:U: adjacent_5p upward } 0 5 {D554R:U -> D553R:G: adjacent_3p downward } 0 6 {D553R:G -> D561R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D561R:C -> D553R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D554R:U -> D558R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {D558R:A -> D554R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {D558R:A -> D559R:U: adjacent_5p } 0 11 {D559R:U -> D558R:A: adjacent_3p } 0 12 {D559R:U -> D560R:U: adjacent_5p upward } 0 13 {D560R:U -> D559R:U: adjacent_3p downward } 0 14 {D560R:U -> D561R:C: adjacent_5p } 0 15 {D561R:C -> D560R:U: adjacent_3p } 0 16 {D561R:C -> D562R:C: adjacent_5p } 0 17 {D562R:C -> D561R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:G 0 2 A8R:G 0 3 A27R:A 0 4 A28R:G 0 5 A29R:G 0 6 A30R:C 0 7 A31R:G 0 [Edges] 0 {A6R:C -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:G: adjacent_3p } 0 6 {A7R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A27R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A27R:A -> A8R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A27R:A -> A28R:G: adjacent_5p upward } 0 11 {A28R:G -> A27R:A: adjacent_3p downward } 0 12 {A28R:G -> A29R:G: adjacent_5p upward } 0 13 {A29R:G -> A28R:G: adjacent_3p downward } 0 14 {A29R:G -> A30R:C: adjacent_5p } 0 15 {A30R:C -> A29R:G: adjacent_3p } 0 16 {A30R:C -> A31R:G: adjacent_5p upward } 0 17 {A31R:G -> A30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:C 0 3 A26R:G 0 4 A27R:A 0 5 A28R:G 0 6 A29R:G 0 7 A30R:C 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p } 0 1 {A8R:G -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A27R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A27R:A -> A8R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A9R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A26R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A26R:G -> A27R:A: adjacent_5p upward } 0 11 {A27R:A -> A26R:G: adjacent_3p downward } 0 12 {A27R:A -> A28R:G: adjacent_5p upward } 0 13 {A28R:G -> A27R:A: adjacent_3p downward } 0 14 {A28R:G -> A29R:G: adjacent_5p upward } 0 15 {A29R:G -> A28R:G: adjacent_3p downward } 0 16 {A29R:G -> A30R:C: adjacent_5p } 0 17 {A30R:C -> A29R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:C 0 2 A13R:C 0 3 A22R:G 0 4 A23R:U 0 5 A24R:C 0 6 A25R:G 0 7 A26R:A 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:C -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:C -> A22R:G: pairing antiparallel cis Ww/Ww } 0 9 {A22R:G -> A13R:C: pairing antiparallel cis Ww/Ww } 0 10 {A22R:G -> A23R:U: adjacent_5p } 0 11 {A23R:U -> A22R:G: adjacent_3p } 0 12 {A23R:U -> A24R:C: adjacent_5p } 0 13 {A24R:C -> A23R:U: adjacent_3p } 0 14 {A23R:U -> A26R:A: pairing parallel cis XXIII Ww/Hh } 0 15 {A26R:A -> A23R:U: pairing parallel cis XXIII Hh/Ww } 0 16 {A24R:C -> A25R:G: adjacent_5p } 0 17 {A25R:G -> A24R:C: adjacent_3p } 0 18 {A25R:G -> A26R:A: adjacent_5p upward } 0 19 {A26R:A -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . 14 5 . . . . 13 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . 15 . 19 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:C 0 2 A14R:C 0 3 A21R:G 0 4 A22R:G 0 5 A23R:U 0 6 A24R:C 0 7 A25R:G 0 [Edges] 0 {A12R:C -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:C: adjacent_5p } 0 5 {A14R:C -> A13R:C: adjacent_3p } 0 6 {A13R:C -> A22R:G: pairing antiparallel cis Ww/Ww } 0 7 {A22R:G -> A13R:C: pairing antiparallel cis Ww/Ww } 0 8 {A14R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A21R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A21R:G -> A22R:G: adjacent_5p upward } 0 11 {A22R:G -> A21R:G: adjacent_3p downward } 0 12 {A22R:G -> A23R:U: adjacent_5p } 0 13 {A23R:U -> A22R:G: adjacent_3p } 0 14 {A23R:U -> A24R:C: adjacent_5p } 0 15 {A24R:C -> A23R:U: adjacent_3p } 0 16 {A24R:C -> A25R:G: adjacent_5p } 0 17 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A27R:U 0 1 A28R:C 0 2 A29R:G 0 3 A6R:C 0 4 A7R:U 0 5 A8R:U 0 6 A9R:G 0 7 A10R:A 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:U: adjacent_3p } 0 6 {A7R:U -> A10R:A: pairing parallel cis Ww/Hh } 0 7 {A10R:A -> A7R:U: pairing parallel cis Hh/Ww } 0 8 {A8R:U -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:U: adjacent_3p } 0 10 {A9R:G -> A10R:A: adjacent_5p upward } 0 11 {A10R:A -> A9R:G: adjacent_3p downward } 0 12 {A9R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A28R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A27R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A27R:U -> A28R:C: adjacent_5p upward } 0 17 {A28R:C -> A27R:U: adjacent_3p downward } 0 18 {A28R:C -> A29R:G: adjacent_5p upward } 0 19 {A29R:G -> A28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . 6 5 . . . . 5 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . 7 . 11 . [GraphModel] [Vertices] 0 A28R:C 0 1 A29R:G 0 2 A30R:C 0 3 A5R:G 0 4 A6R:C 0 5 A7R:U 0 6 A8R:U 0 7 A9R:G 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:U: adjacent_3p } 0 10 {A8R:U -> A9R:G: adjacent_5p } 0 11 {A9R:G -> A8R:U: adjacent_3p } 0 12 {A9R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A28R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A28R:C -> A29R:G: adjacent_5p upward } 0 15 {A29R:G -> A28R:C: adjacent_3p downward } 0 16 {A29R:G -> A30R:C: adjacent_5p upward } 0 17 {A30R:C -> A29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 B110R:G 0 1 B111R:G 0 2 B112R:U 0 3 A14R:A 0 4 A15R:C 0 5 A16R:U 0 6 A17R:U 0 7 A18R:C 0 [Edges] 0 {A14R:A -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:A: adjacent_3p downward } 0 2 {A14R:A -> B112R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B112R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A15R:C -> A16R:U: adjacent_5p upward } 0 5 {A16R:U -> A15R:C: adjacent_3p downward } 0 6 {A15R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B111R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:U -> A17R:U: adjacent_5p } 0 9 {A17R:U -> A16R:U: adjacent_3p } 0 10 {A17R:U -> A18R:C: adjacent_5p } 0 11 {A18R:C -> A17R:U: adjacent_3p } 0 12 {A18R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B110R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:C -> B111R:G: outward } 0 15 {B111R:G -> A18R:C: outward } 0 16 {B110R:G -> B111R:G: adjacent_5p upward } 0 17 {B111R:G -> B110R:G: adjacent_3p downward } 0 18 {B111R:G -> B112R:U: adjacent_5p upward } 0 19 {B112R:U -> B111R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . 7 . . 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 B43R:G 0 1 B44R:G 0 2 B45R:A 0 3 A23R:C 0 4 A24R:G 0 5 A25R:A 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A23R:C -> A24R:G: adjacent_5p } 0 1 {A24R:G -> A23R:C: adjacent_3p } 0 2 {A23R:C -> B45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {B45R:A -> A23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {A24R:G -> A25R:A: adjacent_5p upward } 0 5 {A25R:A -> A24R:G: adjacent_3p downward } 0 6 {A25R:A -> A26R:G: adjacent_5p inward } 0 7 {A26R:G -> A25R:A: adjacent_3p inward } 0 8 {A26R:G -> A27R:C: adjacent_5p } 0 9 {A27R:C -> A26R:G: adjacent_3p } 0 10 {A27R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B43R:G -> B44R:G: adjacent_5p upward } 0 13 {B44R:G -> B43R:G: adjacent_3p downward } 0 14 {B44R:G -> B45R:A: adjacent_5p upward } 0 15 {B45R:A -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 D43R:G 0 1 D44R:G 0 2 D45R:A 0 3 C23R:C 0 4 C24R:G 0 5 C25R:A 0 6 C26R:G 0 7 C27R:C 0 [Edges] 0 {C23R:C -> C24R:G: adjacent_5p } 0 1 {C24R:G -> C23R:C: adjacent_3p } 0 2 {C23R:C -> D45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {D45R:A -> C23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {C24R:G -> C25R:A: adjacent_5p } 0 5 {C25R:A -> C24R:G: adjacent_3p } 0 6 {C25R:A -> C26R:G: adjacent_5p inward } 0 7 {C26R:G -> C25R:A: adjacent_3p inward } 0 8 {C26R:G -> C27R:C: adjacent_5p } 0 9 {C27R:C -> C26R:G: adjacent_3p } 0 10 {C27R:C -> D43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D43R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D43R:G -> D44R:G: adjacent_5p upward } 0 13 {D44R:G -> D43R:G: adjacent_3p downward } 0 14 {D44R:G -> D45R:A: adjacent_5p upward } 0 15 {D45R:A -> D44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 F43R:G 0 1 F44R:G 0 2 F45R:A 0 3 E23R:C 0 4 E24R:G 0 5 E25R:A 0 6 E26R:G 0 7 E27R:C 0 [Edges] 0 {E23R:C -> E24R:G: adjacent_5p } 0 1 {E24R:G -> E23R:C: adjacent_3p } 0 2 {E23R:C -> F45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {F45R:A -> E23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {E24R:G -> E25R:A: adjacent_5p } 0 5 {E25R:A -> E24R:G: adjacent_3p } 0 6 {E25R:A -> E26R:G: adjacent_5p inward } 0 7 {E26R:G -> E25R:A: adjacent_3p inward } 0 8 {E26R:G -> E27R:C: adjacent_5p } 0 9 {E27R:C -> E26R:G: adjacent_3p } 0 10 {E27R:C -> F43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F43R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {F43R:G -> F44R:G: adjacent_5p upward } 0 13 {F44R:G -> F43R:G: adjacent_3p downward } 0 14 {F44R:G -> F45R:A: adjacent_5p upward } 0 15 {F45R:A -> F44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 H43R:G 0 1 H44R:G 0 2 H45R:A 0 3 G23R:C 0 4 G24R:G 0 5 G25R:A 0 6 G26R:G 0 7 G27R:C 0 [Edges] 0 {G23R:C -> G24R:G: adjacent_5p } 0 1 {G24R:G -> G23R:C: adjacent_3p } 0 2 {G23R:C -> H45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {H45R:A -> G23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {G24R:G -> G25R:A: adjacent_5p upward } 0 5 {G25R:A -> G24R:G: adjacent_3p downward } 0 6 {G25R:A -> G26R:G: adjacent_5p inward } 0 7 {G26R:G -> G25R:A: adjacent_3p inward } 0 8 {G26R:G -> G27R:C: adjacent_5p } 0 9 {G27R:C -> G26R:G: adjacent_3p } 0 10 {G27R:C -> H43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {H43R:G -> G27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {H43R:G -> H44R:G: adjacent_5p upward } 0 13 {H44R:G -> H43R:G: adjacent_3p downward } 0 14 {H44R:G -> H45R:A: adjacent_5p upward } 0 15 {H45R:A -> H44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C1055R:G 0 1 C1056R:G 0 2 C1057R:A 0 3 C1081R:U 0 4 C1082R:U 0 5 C1083R:U 0 6 C1084R:A 0 7 C1085R:A 0 [Edges] 0 {C1055R:G -> C1056R:G: adjacent_5p upward } 0 1 {C1056R:G -> C1055R:G: adjacent_3p downward } 0 2 {C1055R:G -> C1085R:A: pairing parallel trans 57 Ss/Ss } 0 3 {C1085R:A -> C1055R:G: pairing parallel trans 57 Ss/Ss } 0 4 {C1056R:G -> C1057R:A: adjacent_5p } 0 5 {C1057R:A -> C1056R:G: adjacent_3p } 0 6 {C1057R:A -> C1081R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C1081R:U -> C1057R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C1081R:U -> C1082R:U: adjacent_5p upward } 0 9 {C1082R:U -> C1081R:U: adjacent_3p downward } 0 10 {C1082R:U -> C1083R:U: adjacent_5p upward } 0 11 {C1083R:U -> C1082R:U: adjacent_3p downward } 0 12 {C1083R:U -> C1084R:A: adjacent_5p } 0 13 {C1084R:A -> C1083R:U: adjacent_3p } 0 14 {C1084R:A -> C1085R:A: adjacent_5p upward } 0 15 {C1085R:A -> C1084R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 C1100R:C 0 1 C1101R:U 0 2 C1102R:C 0 3 C1087R:G 0 4 C1088R:A 0 5 C1089R:G 0 6 C1090R:U 0 7 C1091R:G 0 [Edges] 0 {C1087R:G -> C1088R:A: adjacent_5p } 0 1 {C1088R:A -> C1087R:G: adjacent_3p } 0 2 {C1087R:G -> C1089R:G: upward } 0 3 {C1089R:G -> C1087R:G: downward } 0 4 {C1087R:G -> C1102R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C1102R:C -> C1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C1088R:A -> C1089R:G: adjacent_5p } 0 7 {C1089R:G -> C1088R:A: adjacent_3p } 0 8 {C1089R:G -> C1090R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {C1090R:U -> C1089R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {C1090R:U -> C1091R:G: adjacent_5p upward } 0 11 {C1091R:G -> C1090R:U: adjacent_3p downward } 0 12 {C1090R:U -> C1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {C1101R:U -> C1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {C1091R:G -> C1100R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C1100R:C -> C1091R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C1100R:C -> C1101R:U: adjacent_5p upward } 0 17 {C1101R:U -> C1100R:C: adjacent_3p downward } 0 18 {C1101R:U -> C1102R:C: adjacent_5p } 0 19 {C1102R:C -> C1101R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:G 0 3 A16R:A 0 4 A17R:G 0 5 A18R:G 0 6 A19R:C 0 7 A20R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 7 {A19R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 8 {A5R:G -> A16R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A16R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A16R:A -> A17R:G: adjacent_5p upward } 0 11 {A17R:G -> A16R:A: adjacent_3p downward } 0 12 {A17R:G -> A18R:G: adjacent_5p } 0 13 {A18R:G -> A17R:G: adjacent_3p } 0 14 {A18R:G -> A19R:C: adjacent_5p } 0 15 {A19R:C -> A18R:G: adjacent_3p } 0 16 {A19R:C -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:C 0 3 A15R:G 0 4 A16R:A 0 5 A17R:G 0 6 A18R:G 0 7 A19R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 3 {A19R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A16R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A16R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A6R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A15R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A15R:G -> A16R:A: adjacent_5p upward } 0 11 {A16R:A -> A15R:G: adjacent_3p downward } 0 12 {A16R:A -> A17R:G: adjacent_5p upward } 0 13 {A17R:G -> A16R:A: adjacent_3p downward } 0 14 {A17R:G -> A18R:G: adjacent_5p } 0 15 {A18R:G -> A17R:G: adjacent_3p } 0 16 {A18R:G -> A19R:C: adjacent_5p } 0 17 {A19R:C -> A18R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 T44R:A 0 1 T45R:G 0 2 T46R:G 0 3 T22R:G 0 4 T23R:A 0 5 T24R:G 0 6 T25R:C 0 7 T26R:G 0 [Edges] 0 {T22R:G -> T23R:A: adjacent_5p upward } 0 1 {T23R:A -> T22R:G: adjacent_3p downward } 0 2 {T22R:G -> T46R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {T46R:G -> T22R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {T23R:A -> T24R:G: adjacent_5p upward } 0 5 {T24R:G -> T23R:A: adjacent_3p downward } 0 6 {T24R:G -> T25R:C: adjacent_5p upward } 0 7 {T25R:C -> T24R:G: adjacent_3p downward } 0 8 {T25R:C -> T26R:G: adjacent_5p upward } 0 9 {T26R:G -> T25R:C: adjacent_3p downward } 0 10 {T26R:G -> T44R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {T44R:A -> T26R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {T44R:A -> T45R:G: adjacent_5p inward } 0 13 {T45R:G -> T44R:A: adjacent_3p inward } 0 14 {T45R:G -> T46R:G: adjacent_5p } 0 15 {T46R:G -> T45R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 T52R:G 0 1 T53R:G 0 2 T54R:U 0 3 T58R:A 0 4 T59R:G 0 5 T60R:U 0 6 T61R:C 0 7 T62R:C 0 [Edges] 0 {T52R:G -> T53R:G: adjacent_5p upward } 0 1 {T53R:G -> T52R:G: adjacent_3p downward } 0 2 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T53R:G -> T54R:U: adjacent_5p upward } 0 5 {T54R:U -> T53R:G: adjacent_3p downward } 0 6 {T53R:G -> T61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T61R:C -> T53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T54R:U -> T58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {T58R:A -> T54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {T58R:A -> T59R:G: adjacent_5p } 0 11 {T59R:G -> T58R:A: adjacent_3p } 0 12 {T58R:A -> T61R:C: upward } 0 13 {T61R:C -> T58R:A: downward } 0 14 {T59R:G -> T60R:U: adjacent_5p upward } 0 15 {T60R:U -> T59R:G: adjacent_3p downward } 0 16 {T60R:U -> T61R:C: adjacent_5p } 0 17 {T61R:C -> T60R:U: adjacent_3p } 0 18 {T61R:C -> T62R:C: adjacent_5p } 0 19 {T62R:C -> T61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:U 0 2 A10R:G 0 3 A23R:C 0 4 A24R:A 0 5 A25R:C 0 6 A26R:G 0 7 A27R:U 0 [Edges] 0 {A8R:A -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A26R:G: pairing parallel trans one_hbond Hh/C8 } 0 3 {A26R:G -> A8R:A: pairing parallel trans one_hbond C8/Hh } 0 4 {A8R:A -> A27R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 5 {A27R:U -> A8R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 6 {A9R:U -> A10R:G: adjacent_5p } 0 7 {A10R:G -> A9R:U: adjacent_3p } 0 8 {A10R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A23R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A23R:C -> A24R:A: adjacent_5p } 0 11 {A24R:A -> A23R:C: adjacent_3p } 0 12 {A24R:A -> A25R:C: adjacent_5p upward } 0 13 {A25R:C -> A24R:A: adjacent_3p downward } 0 14 {A25R:C -> A26R:G: adjacent_5p } 0 15 {A26R:G -> A25R:C: adjacent_3p } 0 16 {A26R:G -> A27R:U: adjacent_5p } 0 17 {A27R:U -> A26R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . . . 2 . 7 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 3 . . . . 15 . 16 7 5 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C407R:U 0 1 C408R:G 0 2 C409R:U 0 3 C413R:A 0 4 C414R:U 0 5 C415R:C 0 6 C416R:C 0 7 C417R:A 0 [Edges] 0 {C407R:U -> C408R:G: adjacent_5p } 0 1 {C408R:G -> C407R:U: adjacent_3p } 0 2 {C407R:U -> C417R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C417R:A -> C407R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C408R:G -> C409R:U: adjacent_5p upward } 0 5 {C409R:U -> C408R:G: adjacent_3p downward } 0 6 {C408R:G -> C416R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C416R:C -> C408R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C408R:G -> C417R:A: outward } 0 9 {C417R:A -> C408R:G: outward } 0 10 {C409R:U -> C413R:A: pairing antiparallel trans XXIV Ww/Hh } 0 11 {C413R:A -> C409R:U: pairing antiparallel trans XXIV Hh/Ww } 0 12 {C413R:A -> C414R:U: adjacent_5p } 0 13 {C414R:U -> C413R:A: adjacent_3p } 0 14 {C413R:A -> C416R:C: upward } 0 15 {C416R:C -> C413R:A: downward } 0 16 {C414R:U -> C415R:C: adjacent_5p } 0 17 {C415R:C -> C414R:U: adjacent_3p } 0 18 {C415R:C -> C416R:C: adjacent_5p } 0 19 {C416R:C -> C415R:C: adjacent_3p } 0 20 {C416R:C -> C417R:A: adjacent_5p } 0 21 {C417R:A -> C416R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . . . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 7 . 15 . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 9R:C 0 1 10R:G 0 2 11R:U 0 3 2R:G 0 4 3R:C 0 5 4R:G 0 6 5R:C 0 7 6R:U 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {11R:U -> 2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {10R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 6R:U: pairing antiparallel trans one_hbond Sw/Wh } 0 11 {6R:U -> 4R:G: pairing antiparallel trans one_hbond Wh/Sw } 0 12 {4R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {9R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {5R:C -> 6R:U: adjacent_5p } 0 15 {6R:U -> 5R:C: adjacent_3p } 0 16 {6R:U -> 9R:C: pairing antiparallel cis one_hbond 106 Ww/Bs } 0 17 {9R:C -> 6R:U: pairing antiparallel cis one_hbond 106 Bs/Ww } 0 18 {9R:C -> 10R:G: adjacent_5p upward } 0 19 {10R:G -> 9R:C: adjacent_3p downward } 0 20 {10R:G -> 11R:U: adjacent_5p upward } 0 21 {11R:U -> 10R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 13 . 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 12 . . . 5 . 8 10 6 . . . . . 9 . 14 7 16 . . . . 11 15 . MOLECULE: [GraphModel] [Vertices] 0 A36R:A 0 1 A37R:G 0 2 A38R:U 0 3 A12R:A 0 4 A13R:A 0 5 A14R:A 0 6 A15R:C 0 7 A16R:U 0 [Edges] 0 {A12R:A -> A13R:A: adjacent_5p upward } 0 1 {A13R:A -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A38R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:A -> A14R:A: adjacent_5p } 0 5 {A14R:A -> A13R:A: adjacent_3p } 0 6 {A14R:A -> A15R:C: adjacent_5p upward } 0 7 {A15R:C -> A14R:A: adjacent_3p downward } 0 8 {A15R:C -> A16R:U: adjacent_5p } 0 9 {A16R:U -> A15R:C: adjacent_3p } 0 10 {A15R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A37R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A36R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A16R:U -> A37R:G: outward } 0 15 {A37R:G -> A16R:U: outward } 0 16 {A36R:A -> A37R:G: adjacent_5p upward } 0 17 {A37R:G -> A36R:A: adjacent_3p downward } 0 18 {A37R:G -> A38R:U: adjacent_5p upward } 0 19 {A38R:U -> A37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . . . 11 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 14 . . . . 9 . [GraphModel] [Vertices] 0 A37R:G 0 1 A38R:U 0 2 A39R:C 0 3 A11R:G 0 4 A12R:A 0 5 A13R:A 0 6 A14R:A 0 7 A15R:C 0 [Edges] 0 {A11R:G -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A39R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:A -> A13R:A: adjacent_5p upward } 0 5 {A13R:A -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A38R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:A -> A14R:A: adjacent_5p } 0 9 {A14R:A -> A13R:A: adjacent_3p } 0 10 {A14R:A -> A15R:C: adjacent_5p upward } 0 11 {A15R:C -> A14R:A: adjacent_3p downward } 0 12 {A15R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A37R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A37R:G -> A38R:U: adjacent_5p upward } 0 15 {A38R:U -> A37R:G: adjacent_3p downward } 0 16 {A38R:U -> A39R:C: adjacent_5p upward } 0 17 {A39R:C -> A38R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 B36R:A 0 1 B37R:G 0 2 B38R:U 0 3 B12R:A 0 4 B13R:A 0 5 B14R:A 0 6 B15R:C 0 7 B16R:U 0 [Edges] 0 {B12R:A -> B13R:A: adjacent_5p upward } 0 1 {B13R:A -> B12R:A: adjacent_3p downward } 0 2 {B12R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B38R:U -> B12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B13R:A -> B14R:A: adjacent_5p } 0 5 {B14R:A -> B13R:A: adjacent_3p } 0 6 {B14R:A -> B15R:C: adjacent_5p upward } 0 7 {B15R:C -> B14R:A: adjacent_3p downward } 0 8 {B14R:A -> B38R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 9 {B38R:U -> B14R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 10 {B15R:C -> B16R:U: adjacent_5p } 0 11 {B16R:U -> B15R:C: adjacent_3p } 0 12 {B15R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B37R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B16R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B36R:A -> B16R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B16R:U -> B37R:G: outward } 0 17 {B37R:G -> B16R:U: outward } 0 18 {B36R:A -> B37R:G: adjacent_5p upward } 0 19 {B37R:G -> B36R:A: adjacent_3p downward } 0 20 {B37R:G -> B38R:U: adjacent_5p upward } 0 21 {B38R:U -> B37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . . . 13 17 2 . 21 . 3 . 9 . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . 8 . 5 . 6 . 6 . 12 . . . 7 . 10 7 14 16 . . . . 11 . [GraphModel] [Vertices] 0 B37R:G 0 1 B38R:U 0 2 B39R:C 0 3 B11R:G 0 4 B12R:A 0 5 B13R:A 0 6 B14R:A 0 7 B15R:C 0 [Edges] 0 {B11R:G -> B12R:A: adjacent_5p upward } 0 1 {B12R:A -> B11R:G: adjacent_3p downward } 0 2 {B11R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B39R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B12R:A -> B13R:A: adjacent_5p upward } 0 5 {B13R:A -> B12R:A: adjacent_3p downward } 0 6 {B12R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B38R:U -> B12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B13R:A -> B14R:A: adjacent_5p } 0 9 {B14R:A -> B13R:A: adjacent_3p } 0 10 {B14R:A -> B15R:C: adjacent_5p upward } 0 11 {B15R:C -> B14R:A: adjacent_3p downward } 0 12 {B14R:A -> B38R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 13 {B38R:U -> B14R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 14 {B15R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B37R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B37R:G -> B38R:U: adjacent_5p upward } 0 17 {B38R:U -> B37R:G: adjacent_3p downward } 0 18 {B38R:U -> B39R:C: adjacent_5p upward } 0 19 {B39R:C -> B38R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . 7 . 13 . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A33R:G 0 1 A34R:C 0 2 A35R:G 0 3 A4R:C 0 4 A5R:U 0 5 A6R:A 0 6 A7R:G 0 7 A8R:C 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:U: adjacent_3p } 0 6 {A6R:A -> A7R:G: adjacent_5p upward } 0 7 {A7R:G -> A6R:A: adjacent_3p downward } 0 8 {A7R:G -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A33R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A33R:G -> A34R:C: adjacent_5p upward } 0 15 {A34R:C -> A33R:G: adjacent_3p downward } 0 16 {A34R:C -> A35R:G: adjacent_5p upward } 0 17 {A35R:G -> A34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 A34R:C 0 1 A35R:G 0 2 A36R:C 0 3 A3R:G 0 4 A4R:C 0 5 A5R:U 0 6 A6R:A 0 7 A7R:G 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A36R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A35R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:A: adjacent_5p } 0 9 {A6R:A -> A5R:U: adjacent_3p } 0 10 {A6R:A -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:A: adjacent_3p downward } 0 12 {A7R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A34R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A34R:C -> A35R:G: adjacent_5p upward } 0 15 {A35R:G -> A34R:C: adjacent_3p downward } 0 16 {A35R:G -> A36R:C: adjacent_5p } 0 17 {A36R:C -> A35R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A52R:G 0 1 A53R:G 0 2 A54R:U 0 3 A58R:A 0 4 A59R:C 0 5 A60R:U 0 6 A61R:C 0 7 A62R:C 0 [Edges] 0 {A52R:G -> A53R:G: adjacent_5p upward } 0 1 {A53R:G -> A52R:G: adjacent_3p downward } 0 2 {A52R:G -> A62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A62R:C -> A52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A53R:G -> A54R:U: adjacent_5p upward } 0 5 {A54R:U -> A53R:G: adjacent_3p downward } 0 6 {A53R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A61R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A54R:U -> A58R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 9 {A58R:A -> A54R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 10 {A58R:A -> A59R:C: adjacent_5p } 0 11 {A59R:C -> A58R:A: adjacent_3p } 0 12 {A58R:A -> A61R:C: upward } 0 13 {A61R:C -> A58R:A: downward } 0 14 {A59R:C -> A60R:U: adjacent_5p upward } 0 15 {A60R:U -> A59R:C: adjacent_3p downward } 0 16 {A60R:U -> A61R:C: adjacent_5p } 0 17 {A61R:C -> A60R:U: adjacent_3p } 0 18 {A61R:C -> A62R:C: adjacent_5p } 0 19 {A62R:C -> A61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B347R:G 0 1 B348R:G 0 2 B349R:C 0 3 B313R:G 0 4 B314R:A 0 5 B315R:C 0 6 B316R:C 0 7 B317R:C 0 [Edges] 0 {B313R:G -> B314R:A: adjacent_5p upward } 0 1 {B314R:A -> B313R:G: adjacent_3p downward } 0 2 {B313R:G -> B349R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B349R:C -> B313R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B314R:A -> B315R:C: adjacent_5p upward } 0 5 {B315R:C -> B314R:A: adjacent_3p downward } 0 6 {B315R:C -> B316R:C: adjacent_5p } 0 7 {B316R:C -> B315R:C: adjacent_3p } 0 8 {B316R:C -> B317R:C: adjacent_5p upward } 0 9 {B317R:C -> B316R:C: adjacent_3p downward } 0 10 {B316R:C -> B348R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B348R:G -> B316R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B317R:C -> B347R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B347R:G -> B317R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B347R:G -> B348R:G: adjacent_5p upward } 0 15 {B348R:G -> B347R:G: adjacent_3p downward } 0 16 {B348R:G -> B349R:C: adjacent_5p upward } 0 17 {B349R:C -> B348R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 B348R:G 0 1 B349R:C 0 2 B350R:C 0 3 B312R:G 0 4 B313R:G 0 5 B314R:A 0 6 B315R:C 0 7 B316R:C 0 [Edges] 0 {B312R:G -> B313R:G: adjacent_5p upward } 0 1 {B313R:G -> B312R:G: adjacent_3p downward } 0 2 {B312R:G -> B350R:C: pairing antiparallel cis Ww/Ww } 0 3 {B350R:C -> B312R:G: pairing antiparallel cis Ww/Ww } 0 4 {B313R:G -> B314R:A: adjacent_5p upward } 0 5 {B314R:A -> B313R:G: adjacent_3p downward } 0 6 {B313R:G -> B349R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B349R:C -> B313R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B314R:A -> B315R:C: adjacent_5p upward } 0 9 {B315R:C -> B314R:A: adjacent_3p downward } 0 10 {B315R:C -> B316R:C: adjacent_5p } 0 11 {B316R:C -> B315R:C: adjacent_3p } 0 12 {B316R:C -> B348R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B348R:G -> B316R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B348R:G -> B349R:C: adjacent_5p upward } 0 15 {B349R:C -> B348R:G: adjacent_3p downward } 0 16 {B349R:C -> B350R:C: adjacent_5p upward } 0 17 {B350R:C -> B349R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A115R:G 0 1 A116R:U 0 2 A117R:G 0 3 A224R:C 0 4 A225R:A 0 5 A226R:A 0 6 A227R:A 0 7 A228R:C 0 [Edges] 0 {A115R:G -> A116R:U: adjacent_5p upward } 0 1 {A116R:U -> A115R:G: adjacent_3p downward } 0 2 {A115R:G -> A228R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A228R:C -> A115R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A116R:U -> A117R:G: adjacent_5p upward } 0 5 {A117R:G -> A116R:U: adjacent_3p downward } 0 6 {A116R:U -> A227R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A227R:A -> A116R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A117R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A224R:C -> A117R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A117R:G -> A227R:A: outward } 0 11 {A227R:A -> A117R:G: outward } 0 12 {A224R:C -> A225R:A: adjacent_5p } 0 13 {A225R:A -> A224R:C: adjacent_3p } 0 14 {A225R:A -> A226R:A: adjacent_5p } 0 15 {A226R:A -> A225R:A: adjacent_3p } 0 16 {A225R:A -> A228R:C: pairing parallel cis one_hbond Ss/Hw } 0 17 {A228R:C -> A225R:A: pairing parallel cis one_hbond Hw/Ss } 0 18 {A226R:A -> A227R:A: adjacent_5p } 0 19 {A227R:A -> A226R:A: adjacent_3p } 0 20 {A227R:A -> A228R:C: adjacent_5p upward } 0 21 {A228R:C -> A227R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . 16 5 . . . . 15 . 18 . 6 . 7 11 . . 19 . 20 7 3 . . . 17 . 21 . [GraphModel] [Vertices] 0 A116R:U 0 1 A117R:G 0 2 A118R:C 0 3 A223R:G 0 4 A224R:C 0 5 A225R:A 0 6 A226R:A 0 7 A227R:A 0 [Edges] 0 {A116R:U -> A117R:G: adjacent_5p upward } 0 1 {A117R:G -> A116R:U: adjacent_3p downward } 0 2 {A116R:U -> A227R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A227R:A -> A116R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A117R:G -> A118R:C: adjacent_5p upward } 0 5 {A118R:C -> A117R:G: adjacent_3p downward } 0 6 {A117R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A224R:C -> A117R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A117R:G -> A227R:A: outward } 0 9 {A227R:A -> A117R:G: outward } 0 10 {A118R:C -> A223R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A223R:G -> A118R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A223R:G -> A224R:C: adjacent_5p upward } 0 13 {A224R:C -> A223R:G: adjacent_3p downward } 0 14 {A224R:C -> A225R:A: adjacent_5p } 0 15 {A225R:A -> A224R:C: adjacent_3p } 0 16 {A225R:A -> A226R:A: adjacent_5p } 0 17 {A226R:A -> A225R:A: adjacent_3p } 0 18 {A226R:A -> A227R:A: adjacent_5p } 0 19 {A227R:A -> A226R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A132R:C 0 1 A133R:C 0 2 A134R:G 0 3 A164R:C 0 4 A165R:A 0 5 A166R:A 0 6 A167R:G 0 7 A168R:G 0 [Edges] 0 {A132R:C -> A133R:C: adjacent_5p upward } 0 1 {A133R:C -> A132R:C: adjacent_3p downward } 0 2 {A132R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A168R:G -> A132R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A133R:C -> A134R:G: adjacent_5p upward } 0 5 {A134R:G -> A133R:C: adjacent_3p downward } 0 6 {A133R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A167R:G -> A133R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A134R:G -> A164R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A164R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A164R:C -> A165R:A: adjacent_5p } 0 11 {A165R:A -> A164R:C: adjacent_3p } 0 12 {A164R:C -> A166R:A: pairing parallel cis one_hbond Ss/Hw } 0 13 {A166R:A -> A164R:C: pairing parallel cis one_hbond Hw/Ss } 0 14 {A165R:A -> A166R:A: adjacent_5p } 0 15 {A166R:A -> A165R:A: adjacent_3p } 0 16 {A166R:A -> A167R:G: adjacent_5p } 0 17 {A167R:G -> A166R:A: adjacent_3p } 0 18 {A167R:G -> A168R:G: adjacent_5p upward } 0 19 {A168R:G -> A167R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 12 . . 4 . . . 11 . 14 . . 5 . . . 13 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A133R:C 0 1 A134R:G 0 2 A135R:C 0 3 A163R:G 0 4 A164R:C 0 5 A165R:A 0 6 A166R:A 0 7 A167R:G 0 [Edges] 0 {A133R:C -> A134R:G: adjacent_5p upward } 0 1 {A134R:G -> A133R:C: adjacent_3p downward } 0 2 {A133R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A167R:G -> A133R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A134R:G -> A135R:C: adjacent_5p upward } 0 5 {A135R:C -> A134R:G: adjacent_3p downward } 0 6 {A134R:G -> A164R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A164R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A135R:C -> A163R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A163R:G -> A135R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A163R:G -> A164R:C: adjacent_5p upward } 0 11 {A164R:C -> A163R:G: adjacent_3p downward } 0 12 {A164R:C -> A165R:A: adjacent_5p } 0 13 {A165R:A -> A164R:C: adjacent_3p } 0 14 {A164R:C -> A166R:A: pairing parallel cis one_hbond Ss/Hw } 0 15 {A166R:A -> A164R:C: pairing parallel cis one_hbond Hw/Ss } 0 16 {A165R:A -> A166R:A: adjacent_5p } 0 17 {A166R:A -> A165R:A: adjacent_3p } 0 18 {A166R:A -> A167R:G: adjacent_5p } 0 19 {A167R:G -> A166R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 14 . 5 . . . . 13 . 16 . 6 . . . . 15 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A160R:C 0 1 A161R:G 0 2 A162R:G 0 3 A136R:C 0 4 A137R:A 0 5 A138R:G 0 6 A139R:C 0 7 A140R:G 0 [Edges] 0 {A136R:C -> A137R:A: adjacent_5p } 0 1 {A137R:A -> A136R:C: adjacent_3p } 0 2 {A136R:C -> A162R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A162R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A137R:A -> A138R:G: adjacent_5p } 0 5 {A138R:G -> A137R:A: adjacent_3p } 0 6 {A138R:G -> A139R:C: adjacent_5p upward } 0 7 {A139R:C -> A138R:G: adjacent_3p downward } 0 8 {A138R:G -> A162R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 9 {A162R:G -> A138R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 10 {A139R:C -> A140R:G: adjacent_5p } 0 11 {A140R:G -> A139R:C: adjacent_3p } 0 12 {A139R:C -> A161R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A161R:G -> A139R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A140R:G -> A160R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A160R:C -> A140R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A140R:G -> A161R:G: outward } 0 17 {A161R:G -> A140R:G: outward } 0 18 {A160R:C -> A161R:G: adjacent_5p } 0 19 {A161R:G -> A160R:C: adjacent_3p } 0 20 {A161R:G -> A162R:G: adjacent_5p upward } 0 21 {A162R:G -> A161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . . . 13 17 2 . 21 . 3 . 9 . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . 8 . 5 . 6 . 6 . 12 . . . 7 . 10 7 14 16 . . . . 11 . [GraphModel] [Vertices] 0 A161R:G 0 1 A162R:G 0 2 A163R:G 0 3 A135R:C 0 4 A136R:C 0 5 A137R:A 0 6 A138R:G 0 7 A139R:C 0 [Edges] 0 {A135R:C -> A136R:C: adjacent_5p } 0 1 {A136R:C -> A135R:C: adjacent_3p } 0 2 {A135R:C -> A163R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A163R:G -> A135R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A136R:C -> A137R:A: adjacent_5p } 0 5 {A137R:A -> A136R:C: adjacent_3p } 0 6 {A136R:C -> A162R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A162R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A136R:C -> A163R:G: outward } 0 9 {A163R:G -> A136R:C: outward } 0 10 {A137R:A -> A138R:G: adjacent_5p } 0 11 {A138R:G -> A137R:A: adjacent_3p } 0 12 {A138R:G -> A139R:C: adjacent_5p upward } 0 13 {A139R:C -> A138R:G: adjacent_3p downward } 0 14 {A138R:G -> A162R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 15 {A162R:G -> A138R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 16 {A139R:C -> A161R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {A161R:G -> A139R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {A161R:G -> A162R:G: adjacent_5p upward } 0 19 {A162R:G -> A161R:G: adjacent_3p downward } 0 20 {A162R:G -> A163R:G: adjacent_5p upward } 0 21 {A163R:G -> A162R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . 7 . 15 . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . . . . 5 . 10 . 6 . 14 . . . 11 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 A162R:G 0 1 A163R:G 0 2 A164R:C 0 3 A134R:G 0 4 A135R:C 0 5 A136R:C 0 6 A137R:A 0 7 A138R:G 0 [Edges] 0 {A134R:G -> A135R:C: adjacent_5p upward } 0 1 {A135R:C -> A134R:G: adjacent_3p downward } 0 2 {A134R:G -> A164R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A164R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A135R:C -> A136R:C: adjacent_5p } 0 5 {A136R:C -> A135R:C: adjacent_3p } 0 6 {A135R:C -> A163R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A163R:G -> A135R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A136R:C -> A137R:A: adjacent_5p } 0 9 {A137R:A -> A136R:C: adjacent_3p } 0 10 {A136R:C -> A162R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A162R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A136R:C -> A163R:G: outward } 0 13 {A163R:G -> A136R:C: outward } 0 14 {A137R:A -> A138R:G: adjacent_5p } 0 15 {A138R:G -> A137R:A: adjacent_3p } 0 16 {A138R:G -> A162R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 17 {A162R:G -> A138R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 18 {A162R:G -> A163R:G: adjacent_5p upward } 0 19 {A163R:G -> A162R:G: adjacent_3p downward } 0 20 {A163R:G -> A164R:C: adjacent_5p upward } 0 21 {A164R:C -> A163R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 . 17 1 19 . 20 . 7 13 . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 12 . . 5 . 8 . 6 . . . . . 9 . 14 7 16 . . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:C 0 2 A11R:G 0 3 A22R:C 0 4 A23R:U 0 5 A24R:G 0 6 A25R:G 0 7 A26R:A 0 [Edges] 0 {A9R:U -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:C -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A11R:G -> A25R:G: outward } 0 11 {A25R:G -> A11R:G: outward } 0 12 {A22R:C -> A23R:U: adjacent_5p } 0 13 {A23R:U -> A22R:C: adjacent_3p } 0 14 {A23R:U -> A24R:G: adjacent_5p } 0 15 {A24R:G -> A23R:U: adjacent_3p } 0 16 {A23R:U -> A26R:A: pairing parallel cis XXIII Ww/Hh } 0 17 {A26R:A -> A23R:U: pairing parallel cis XXIII Hh/Ww } 0 18 {A24R:G -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:G: adjacent_3p } 0 20 {A25R:G -> A26R:A: adjacent_5p upward } 0 21 {A26R:A -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . 16 5 . . . . 15 . 18 . 6 . 7 11 . . 19 . 20 7 3 . . . 17 . 21 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:G 0 2 A12R:U 0 3 A21R:A 0 4 A22R:C 0 5 A23R:U 0 6 A24R:G 0 7 A25R:G 0 [Edges] 0 {A10R:C -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:G -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A25R:G: outward } 0 9 {A25R:G -> A11R:G: outward } 0 10 {A12R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A21R:A -> A22R:C: adjacent_5p upward } 0 13 {A22R:C -> A21R:A: adjacent_3p downward } 0 14 {A22R:C -> A23R:U: adjacent_5p } 0 15 {A23R:U -> A22R:C: adjacent_3p } 0 16 {A23R:U -> A24R:G: adjacent_5p } 0 17 {A24R:G -> A23R:U: adjacent_3p } 0 18 {A24R:G -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 '0'98R:A 0 1 '0'99R:A 0 2 '0'100R:C 0 3 '0'77R:G 0 4 '0'78R:G 0 5 '0'79R:G 0 6 '0'80R:A 0 7 '0'81R:G 0 [Edges] 0 {'0'77R:G -> '0'78R:G: adjacent_5p upward } 0 1 {'0'78R:G -> '0'77R:G: adjacent_3p downward } 0 2 {'0'77R:G -> '0'100R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'100R:C -> '0'77R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'78R:G -> '0'79R:G: adjacent_5p upward } 0 5 {'0'79R:G -> '0'78R:G: adjacent_3p downward } 0 6 {'0'78R:G -> '0'99R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {'0'99R:A -> '0'78R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {'0'79R:G -> '0'80R:A: adjacent_5p } 0 9 {'0'80R:A -> '0'79R:G: adjacent_3p } 0 10 {'0'79R:G -> '0'98R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 11 {'0'98R:A -> '0'79R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 12 {'0'80R:A -> '0'81R:G: adjacent_5p } 0 13 {'0'81R:G -> '0'80R:A: adjacent_3p } 0 14 {'0'80R:A -> '0'98R:A: outward } 0 15 {'0'98R:A -> '0'80R:A: outward } 0 16 {'0'81R:G -> '0'98R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 17 {'0'98R:A -> '0'81R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 18 {'0'98R:A -> '0'99R:A: adjacent_5p upward } 0 19 {'0'99R:A -> '0'98R:A: adjacent_3p downward } 0 20 {'0'99R:A -> '0'100R:C: adjacent_5p upward } 0 21 {'0'100R:C -> '0'99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 14 . . . . 9 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 '0'202R:U 0 1 '0'203R:G 0 2 '0'204R:A 0 3 '0'190R:G 0 4 '0'191R:A 0 5 '0'192R:A 0 6 '0'193R:A 0 7 '0'194R:A 0 [Edges] 0 {'0'190R:G -> '0'191R:A: adjacent_5p } 0 1 {'0'191R:A -> '0'190R:G: adjacent_3p } 0 2 {'0'190R:G -> '0'204R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 3 {'0'204R:A -> '0'190R:G: pairing antiparallel cis one_hbond Bs/Ss } 0 4 {'0'191R:A -> '0'192R:A: adjacent_5p } 0 5 {'0'192R:A -> '0'191R:A: adjacent_3p } 0 6 {'0'191R:A -> '0'204R:A: outward } 0 7 {'0'204R:A -> '0'191R:A: outward } 0 8 {'0'192R:A -> '0'193R:A: adjacent_5p } 0 9 {'0'193R:A -> '0'192R:A: adjacent_3p } 0 10 {'0'192R:A -> '0'194R:A: upward } 0 11 {'0'194R:A -> '0'192R:A: downward } 0 12 {'0'192R:A -> '0'203R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'203R:G -> '0'192R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'193R:A -> '0'194R:A: adjacent_5p } 0 15 {'0'194R:A -> '0'193R:A: adjacent_3p } 0 16 {'0'194R:A -> '0'202R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'202R:U -> '0'194R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'202R:U -> '0'203R:G: adjacent_5p upward } 0 19 {'0'203R:G -> '0'202R:U: adjacent_3p downward } 0 20 {'0'203R:G -> '0'204R:A: adjacent_5p } 0 21 {'0'204R:A -> '0'203R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . . 13 . . 2 . 21 . 3 7 . . . 3 . . 2 . 0 . . . 4 . . 6 1 . 4 . . 5 . 12 . . 5 . 8 10 6 . . . . . 9 . 14 7 16 . . . . 11 15 . [GraphModel] [Vertices] 0 '0'247R:A 0 1 '0'248R:A 0 2 '0'249R:G 0 3 '0'260R:C 0 4 '0'261R:A 0 5 '0'262R:A 0 6 '0'263R:U 0 7 '0'264R:G 0 [Edges] 0 {'0'247R:A -> '0'248R:A: adjacent_5p } 0 1 {'0'248R:A -> '0'247R:A: adjacent_3p } 0 2 {'0'247R:A -> '0'262R:A: inward } 0 3 {'0'262R:A -> '0'247R:A: inward } 0 4 {'0'247R:A -> '0'264R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {'0'264R:G -> '0'247R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {'0'248R:A -> '0'249R:G: adjacent_5p } 0 7 {'0'249R:G -> '0'248R:A: adjacent_3p } 0 8 {'0'249R:G -> '0'260R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'260R:C -> '0'249R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'260R:C -> '0'261R:A: adjacent_5p upward } 0 11 {'0'261R:A -> '0'260R:C: adjacent_3p downward } 0 12 {'0'261R:A -> '0'262R:A: adjacent_5p } 0 13 {'0'262R:A -> '0'261R:A: adjacent_3p } 0 14 {'0'262R:A -> '0'263R:U: adjacent_5p } 0 15 {'0'263R:U -> '0'262R:A: adjacent_3p } 0 16 {'0'263R:U -> '0'264R:G: adjacent_5p } 0 17 {'0'264R:G -> '0'263R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . . . . . 2 . 7 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 3 . . . 13 . 14 . 6 . . . . . 15 . 16 7 5 . . . . . 17 . [GraphModel] [Vertices] 0 '0'265R:U 0 1 '0'266R:G 0 2 '0'267R:G 0 3 '0'244R:C 0 4 '0'245R:C 0 5 '0'246R:G 0 6 '0'247R:A 0 7 '0'248R:A 0 [Edges] 0 {'0'244R:C -> '0'245R:C: adjacent_5p upward } 0 1 {'0'245R:C -> '0'244R:C: adjacent_3p downward } 0 2 {'0'244R:C -> '0'267R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'267R:G -> '0'244R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'245R:C -> '0'246R:G: adjacent_5p upward } 0 5 {'0'246R:G -> '0'245R:C: adjacent_3p downward } 0 6 {'0'245R:C -> '0'266R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'266R:G -> '0'245R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'246R:G -> '0'247R:A: adjacent_5p } 0 9 {'0'247R:A -> '0'246R:G: adjacent_3p } 0 10 {'0'246R:G -> '0'265R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 11 {'0'265R:U -> '0'246R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 12 {'0'247R:A -> '0'248R:A: adjacent_5p } 0 13 {'0'248R:A -> '0'247R:A: adjacent_3p } 0 14 {'0'247R:A -> '0'265R:U: outward } 0 15 {'0'265R:U -> '0'247R:A: outward } 0 16 {'0'248R:A -> '0'265R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'265R:U -> '0'248R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'265R:U -> '0'266R:G: adjacent_5p upward } 0 19 {'0'266R:G -> '0'265R:U: adjacent_3p downward } 0 20 {'0'266R:G -> '0'267R:G: adjacent_5p upward } 0 21 {'0'267R:G -> '0'266R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 14 . . . . 9 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 '0'333R:G 0 1 '0'334R:G 0 2 '0'335R:U 0 3 '0'339R:A 0 4 '0'340R:A 0 5 '0'341R:C 0 6 '0'342R:C 0 7 '0'343R:C 0 [Edges] 0 {'0'333R:G -> '0'334R:G: adjacent_5p upward } 0 1 {'0'334R:G -> '0'333R:G: adjacent_3p downward } 0 2 {'0'333R:G -> '0'343R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'343R:C -> '0'333R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'334R:G -> '0'335R:U: adjacent_5p upward } 0 5 {'0'335R:U -> '0'334R:G: adjacent_3p downward } 0 6 {'0'334R:G -> '0'342R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'342R:C -> '0'334R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'335R:U -> '0'339R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 9 {'0'339R:A -> '0'335R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 10 {'0'339R:A -> '0'340R:A: adjacent_5p } 0 11 {'0'340R:A -> '0'339R:A: adjacent_3p } 0 12 {'0'339R:A -> '0'342R:C: upward } 0 13 {'0'342R:C -> '0'339R:A: downward } 0 14 {'0'340R:A -> '0'341R:C: adjacent_5p upward } 0 15 {'0'341R:C -> '0'340R:A: adjacent_3p downward } 0 16 {'0'341R:C -> '0'342R:C: adjacent_5p } 0 17 {'0'342R:C -> '0'341R:C: adjacent_3p } 0 18 {'0'342R:C -> '0'343R:C: adjacent_5p upward } 0 19 {'0'343R:C -> '0'342R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'428R:G 0 1 '0'429R:A 0 2 '0'430R:A 0 3 '0'408R:A 0 4 '0'409R:U 0 5 '0'410R:A 0 6 '0'411R:A 0 7 '0'412R:C 0 [Edges] 0 {'0'408R:A -> '0'409R:U: adjacent_5p upward } 0 1 {'0'409R:U -> '0'408R:A: adjacent_3p downward } 0 2 {'0'408R:A -> '0'429R:A: pairing parallel cis one_hbond Ww/Wh } 0 3 {'0'429R:A -> '0'408R:A: pairing parallel cis one_hbond Wh/Ww } 0 4 {'0'408R:A -> '0'430R:A: pairing parallel trans one_hbond Wh/Ww } 0 5 {'0'430R:A -> '0'408R:A: pairing parallel trans one_hbond Ww/Wh } 0 6 {'0'409R:U -> '0'410R:A: adjacent_5p } 0 7 {'0'410R:A -> '0'409R:U: adjacent_3p } 0 8 {'0'410R:A -> '0'411R:A: adjacent_5p } 0 9 {'0'411R:A -> '0'410R:A: adjacent_3p } 0 10 {'0'410R:A -> '0'428R:G: downward } 0 11 {'0'428R:G -> '0'410R:A: upward } 0 12 {'0'411R:A -> '0'412R:C: adjacent_5p } 0 13 {'0'412R:C -> '0'411R:A: adjacent_3p } 0 14 {'0'412R:C -> '0'428R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'428R:G -> '0'412R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'428R:G -> '0'429R:A: adjacent_5p } 0 17 {'0'429R:A -> '0'428R:G: adjacent_3p } 0 18 {'0'429R:A -> '0'430R:A: adjacent_5p upward } 0 19 {'0'430R:A -> '0'429R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . 11 . 15 1 17 . 18 3 . . . . 2 . 19 . 5 . . . . 3 . 2 4 . 0 . . . 4 . . . 1 . 6 . . 5 10 . . . 7 . 8 . 6 . . . . . 9 . 12 7 14 . . . . . 13 . [GraphModel] [Vertices] 0 '0'553R:G 0 1 '0'554R:G 0 2 '0'555R:U 0 3 '0'602R:A 0 4 '0'603R:A 0 5 '0'604R:G 0 6 '0'605R:C 0 7 '0'606R:C 0 [Edges] 0 {'0'553R:G -> '0'554R:G: adjacent_5p upward } 0 1 {'0'554R:G -> '0'553R:G: adjacent_3p downward } 0 2 {'0'553R:G -> '0'606R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'606R:C -> '0'553R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'554R:G -> '0'555R:U: adjacent_5p } 0 5 {'0'555R:U -> '0'554R:G: adjacent_3p } 0 6 {'0'554R:G -> '0'605R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'605R:C -> '0'554R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'555R:U -> '0'602R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'602R:A -> '0'555R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'602R:A -> '0'603R:A: adjacent_5p } 0 11 {'0'603R:A -> '0'602R:A: adjacent_3p } 0 12 {'0'603R:A -> '0'604R:G: adjacent_5p } 0 13 {'0'604R:G -> '0'603R:A: adjacent_3p } 0 14 {'0'604R:G -> '0'605R:C: adjacent_5p } 0 15 {'0'605R:C -> '0'604R:G: adjacent_3p } 0 16 {'0'605R:C -> '0'606R:C: adjacent_5p } 0 17 {'0'606R:C -> '0'605R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'554R:G 0 1 '0'555R:U 0 2 '0'556R:C 0 3 '0'601R:G 0 4 '0'602R:A 0 5 '0'603R:A 0 6 '0'604R:G 0 7 '0'605R:C 0 [Edges] 0 {'0'554R:G -> '0'555R:U: adjacent_5p } 0 1 {'0'555R:U -> '0'554R:G: adjacent_3p } 0 2 {'0'554R:G -> '0'605R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'605R:C -> '0'554R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'555R:U -> '0'556R:C: adjacent_5p upward } 0 5 {'0'556R:C -> '0'555R:U: adjacent_3p downward } 0 6 {'0'555R:U -> '0'602R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'602R:A -> '0'555R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'556R:C -> '0'601R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'601R:G -> '0'556R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'601R:G -> '0'602R:A: adjacent_5p upward } 0 11 {'0'602R:A -> '0'601R:G: adjacent_3p downward } 0 12 {'0'602R:A -> '0'603R:A: adjacent_5p } 0 13 {'0'603R:A -> '0'602R:A: adjacent_3p } 0 14 {'0'603R:A -> '0'604R:G: adjacent_5p } 0 15 {'0'604R:G -> '0'603R:A: adjacent_3p } 0 16 {'0'604R:G -> '0'605R:C: adjacent_5p } 0 17 {'0'605R:C -> '0'604R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'725R:C 0 1 '0'726R:C 0 2 '0'727R:G 0 3 '0'699R:C 0 4 '0'700R:A 0 5 '0'701R:U 0 6 '0'702R:G 0 7 '0'703R:G 0 [Edges] 0 {'0'699R:C -> '0'700R:A: adjacent_5p } 0 1 {'0'700R:A -> '0'699R:C: adjacent_3p } 0 2 {'0'699R:C -> '0'727R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'727R:G -> '0'699R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'700R:A -> '0'701R:U: adjacent_5p } 0 5 {'0'701R:U -> '0'700R:A: adjacent_3p } 0 6 {'0'701R:U -> '0'702R:G: adjacent_5p } 0 7 {'0'702R:G -> '0'701R:U: adjacent_3p } 0 8 {'0'702R:G -> '0'703R:G: adjacent_5p upward } 0 9 {'0'703R:G -> '0'702R:G: adjacent_3p downward } 0 10 {'0'702R:G -> '0'726R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'726R:C -> '0'702R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'702R:G -> '0'727R:G: outward } 0 13 {'0'727R:G -> '0'702R:G: outward } 0 14 {'0'703R:G -> '0'725R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'725R:C -> '0'703R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'725R:C -> '0'726R:C: adjacent_5p } 0 17 {'0'726R:C -> '0'725R:C: adjacent_3p } 0 18 {'0'726R:C -> '0'727R:G: adjacent_5p upward } 0 19 {'0'727R:G -> '0'726R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 11 . 2 . 19 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 . . . . . 9 . [GraphModel] [Vertices] 0 '0'764R:C 0 1 '0'765R:G 0 2 '0'766R:A 0 3 '0'896R:C 0 4 '0'897R:A 0 5 '0'898R:G 0 6 '0'899R:C 0 7 '0'900R:U 0 [Edges] 0 {'0'764R:C -> '0'765R:G: adjacent_5p upward } 0 1 {'0'765R:G -> '0'764R:C: adjacent_3p downward } 0 2 {'0'764R:C -> '0'900R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {'0'900R:U -> '0'764R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {'0'765R:G -> '0'766R:A: adjacent_5p } 0 5 {'0'766R:A -> '0'765R:G: adjacent_3p } 0 6 {'0'765R:G -> '0'899R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'899R:C -> '0'765R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'766R:A -> '0'896R:C: pairing antiparallel trans XXV Hh/Ww } 0 9 {'0'896R:C -> '0'766R:A: pairing antiparallel trans XXV Ww/Hh } 0 10 {'0'766R:A -> '0'897R:A: outward } 0 11 {'0'897R:A -> '0'766R:A: outward } 0 12 {'0'896R:C -> '0'897R:A: adjacent_5p upward } 0 13 {'0'897R:A -> '0'896R:C: adjacent_3p downward } 0 14 {'0'897R:A -> '0'898R:G: adjacent_5p } 0 15 {'0'898R:G -> '0'897R:A: adjacent_3p } 0 16 {'0'898R:G -> '0'899R:C: adjacent_5p } 0 17 {'0'899R:C -> '0'898R:G: adjacent_3p } 0 18 {'0'899R:C -> '0'900R:U: adjacent_5p } 0 19 {'0'900R:U -> '0'899R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 . . . 3 . . 9 . 12 . . . 4 . . 11 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'765R:G 0 1 '0'766R:A 0 2 '0'767R:A 0 3 '0'895R:A 0 4 '0'896R:C 0 5 '0'897R:A 0 6 '0'898R:G 0 7 '0'899R:C 0 [Edges] 0 {'0'765R:G -> '0'766R:A: adjacent_5p } 0 1 {'0'766R:A -> '0'765R:G: adjacent_3p } 0 2 {'0'765R:G -> '0'899R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'899R:C -> '0'765R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'766R:A -> '0'767R:A: adjacent_5p upward } 0 5 {'0'767R:A -> '0'766R:A: adjacent_3p downward } 0 6 {'0'766R:A -> '0'896R:C: pairing antiparallel trans XXV Hh/Ww } 0 7 {'0'896R:C -> '0'766R:A: pairing antiparallel trans XXV Ww/Hh } 0 8 {'0'766R:A -> '0'897R:A: outward } 0 9 {'0'897R:A -> '0'766R:A: outward } 0 10 {'0'767R:A -> '0'895R:A: pairing antiparallel trans V Hh/Ww } 0 11 {'0'895R:A -> '0'767R:A: pairing antiparallel trans V Ww/Hh } 0 12 {'0'895R:A -> '0'896R:C: adjacent_5p upward } 0 13 {'0'896R:C -> '0'895R:A: adjacent_3p downward } 0 14 {'0'896R:C -> '0'897R:A: adjacent_5p upward } 0 15 {'0'897R:A -> '0'896R:C: adjacent_3p downward } 0 16 {'0'897R:A -> '0'898R:G: adjacent_5p } 0 17 {'0'898R:G -> '0'897R:A: adjacent_3p } 0 18 {'0'898R:G -> '0'899R:C: adjacent_5p } 0 19 {'0'899R:C -> '0'898R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 8 . . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . 9 . . 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'836R:G 0 1 '0'837R:U 0 2 '0'838R:C 0 3 '0'843R:A 0 4 '0'844R:A 0 5 '0'845R:U 0 6 '0'846R:A 0 7 '0'847R:C 0 [Edges] 0 {'0'836R:G -> '0'837R:U: adjacent_5p upward } 0 1 {'0'837R:U -> '0'836R:G: adjacent_3p downward } 0 2 {'0'836R:G -> '0'847R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'847R:C -> '0'836R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'837R:U -> '0'838R:C: adjacent_5p upward } 0 5 {'0'838R:C -> '0'837R:U: adjacent_3p downward } 0 6 {'0'837R:U -> '0'846R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'846R:A -> '0'837R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'838R:C -> '0'843R:A: pairing parallel trans one_hbond 76 Ss/Wh } 0 9 {'0'843R:A -> '0'838R:C: pairing parallel trans one_hbond 76 Wh/Ss } 0 10 {'0'843R:A -> '0'844R:A: adjacent_5p } 0 11 {'0'844R:A -> '0'843R:A: adjacent_3p } 0 12 {'0'843R:A -> '0'846R:A: outward } 0 13 {'0'846R:A -> '0'843R:A: outward } 0 14 {'0'844R:A -> '0'845R:U: adjacent_5p } 0 15 {'0'845R:U -> '0'844R:A: adjacent_3p } 0 16 {'0'845R:U -> '0'846R:A: adjacent_5p } 0 17 {'0'846R:A -> '0'845R:U: adjacent_3p } 0 18 {'0'846R:A -> '0'847R:C: adjacent_5p upward } 0 19 {'0'847R:C -> '0'846R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'868R:G 0 1 '0'869R:G 0 2 '0'870R:G 0 3 '0'880R:C 0 4 '0'881R:C 0 5 '0'882R:A 0 6 '0'883R:U 0 7 '0'884R:C 0 [Edges] 0 {'0'868R:G -> '0'869R:G: adjacent_5p } 0 1 {'0'869R:G -> '0'868R:G: adjacent_3p } 0 2 {'0'868R:G -> '0'870R:G: outward } 0 3 {'0'870R:G -> '0'868R:G: outward } 0 4 {'0'868R:G -> '0'884R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'884R:C -> '0'868R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'869R:G -> '0'870R:G: adjacent_5p } 0 7 {'0'870R:G -> '0'869R:G: adjacent_3p } 0 8 {'0'870R:G -> '0'880R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'880R:C -> '0'870R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'880R:C -> '0'881R:C: adjacent_5p } 0 11 {'0'881R:C -> '0'880R:C: adjacent_3p } 0 12 {'0'881R:C -> '0'882R:A: adjacent_5p } 0 13 {'0'882R:A -> '0'881R:C: adjacent_3p } 0 14 {'0'882R:A -> '0'883R:U: adjacent_5p } 0 15 {'0'883R:U -> '0'882R:A: adjacent_3p } 0 16 {'0'883R:U -> '0'884R:C: adjacent_5p } 0 17 {'0'884R:C -> '0'883R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . . . 2 3 7 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 5 . . . . . 17 . [GraphModel] [Vertices] 0 '0'957R:A 0 1 '0'958R:G 0 2 '0'959R:C 0 3 '0'1005R:A 0 4 '0'1006R:A 0 5 '0'1007R:A 0 6 '0'1008R:C 0 7 '0'1009R:U 0 [Edges] 0 {'0'957R:A -> '0'958R:G: adjacent_5p upward } 0 1 {'0'958R:G -> '0'957R:A: adjacent_3p downward } 0 2 {'0'957R:A -> '0'1009R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1009R:U -> '0'957R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'958R:G -> '0'959R:C: adjacent_5p upward } 0 5 {'0'959R:C -> '0'958R:G: adjacent_3p downward } 0 6 {'0'958R:G -> '0'1008R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1008R:C -> '0'958R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'959R:C -> '0'1005R:A: pairing antiparallel trans XXV Ww/Hh } 0 9 {'0'1005R:A -> '0'959R:C: pairing antiparallel trans XXV Hh/Ww } 0 10 {'0'1005R:A -> '0'1006R:A: adjacent_5p } 0 11 {'0'1006R:A -> '0'1005R:A: adjacent_3p } 0 12 {'0'1005R:A -> '0'1008R:C: upward } 0 13 {'0'1008R:C -> '0'1005R:A: downward } 0 14 {'0'1006R:A -> '0'1007R:A: adjacent_5p upward } 0 15 {'0'1007R:A -> '0'1006R:A: adjacent_3p downward } 0 16 {'0'1007R:A -> '0'1008R:C: adjacent_5p } 0 17 {'0'1008R:C -> '0'1007R:A: adjacent_3p } 0 18 {'0'1008R:C -> '0'1009R:U: adjacent_5p upward } 0 19 {'0'1009R:U -> '0'1008R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'962R:C 0 1 '0'963R:C 0 2 '0'964R:G 0 3 '0'1004R:C 0 4 '0'1005R:A 0 5 '0'1006R:A 0 6 '0'1007R:A 0 7 '0'1008R:C 0 [Edges] 0 {'0'962R:C -> '0'963R:C: adjacent_5p upward } 0 1 {'0'963R:C -> '0'962R:C: adjacent_3p downward } 0 2 {'0'962R:C -> '0'1008R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {'0'1008R:C -> '0'962R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {'0'963R:C -> '0'964R:G: adjacent_5p upward } 0 5 {'0'964R:G -> '0'963R:C: adjacent_3p downward } 0 6 {'0'963R:C -> '0'1005R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {'0'1005R:A -> '0'963R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {'0'964R:G -> '0'1004R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1004R:C -> '0'964R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'964R:G -> '0'1005R:A: outward } 0 11 {'0'1005R:A -> '0'964R:G: outward } 0 12 {'0'1004R:C -> '0'1005R:A: adjacent_5p } 0 13 {'0'1005R:A -> '0'1004R:C: adjacent_3p } 0 14 {'0'1005R:A -> '0'1006R:A: adjacent_5p } 0 15 {'0'1006R:A -> '0'1005R:A: adjacent_3p } 0 16 {'0'1005R:A -> '0'1008R:C: upward } 0 17 {'0'1008R:C -> '0'1005R:A: downward } 0 18 {'0'1006R:A -> '0'1007R:A: adjacent_5p upward } 0 19 {'0'1007R:A -> '0'1006R:A: adjacent_3p downward } 0 20 {'0'1007R:A -> '0'1008R:C: adjacent_5p } 0 21 {'0'1008R:C -> '0'1007R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 10 . . . 3 . . 9 . 12 . . . 4 . 7 11 13 . 14 . 16 5 . . . . 15 . 18 . 6 . . . . . 19 . 20 7 3 . . . 17 . 21 . [GraphModel] [Vertices] 0 '0'1025R:C 0 1 '0'1026R:C 0 2 '0'1027R:G 0 3 '0'939R:A 0 4 '0'940R:G 0 5 '0'941R:G 0 6 '0'942R:U 0 7 '0'943R:A 0 [Edges] 0 {'0'939R:A -> '0'940R:G: adjacent_5p } 0 1 {'0'940R:G -> '0'939R:A: adjacent_3p } 0 2 {'0'939R:A -> '0'1027R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {'0'1027R:G -> '0'939R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {'0'940R:G -> '0'941R:G: adjacent_5p upward } 0 5 {'0'941R:G -> '0'940R:G: adjacent_3p downward } 0 6 {'0'940R:G -> '0'1026R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 7 {'0'1026R:C -> '0'940R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 8 {'0'940R:G -> '0'1027R:G: outward } 0 9 {'0'1027R:G -> '0'940R:G: outward } 0 10 {'0'941R:G -> '0'942R:U: adjacent_5p upward } 0 11 {'0'942R:U -> '0'941R:G: adjacent_3p downward } 0 12 {'0'941R:G -> '0'1025R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1025R:C -> '0'941R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'942R:U -> '0'943R:A: adjacent_5p } 0 15 {'0'943R:A -> '0'942R:U: adjacent_3p } 0 16 {'0'943R:A -> '0'1025R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 17 {'0'1025R:C -> '0'943R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 18 {'0'1025R:C -> '0'1026R:C: adjacent_5p upward } 0 19 {'0'1026R:C -> '0'1025R:C: adjacent_3p downward } 0 20 {'0'1026R:C -> '0'1027R:G: adjacent_5p upward } 0 21 {'0'1027R:G -> '0'1026R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 13 . 17 1 19 . 20 . 7 . . . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 12 . . . 5 . 10 . 6 . . . . . 11 . 14 7 16 . . . . . 15 . [GraphModel] [Vertices] 0 '0'1032R:A 0 1 '0'1033R:C 0 2 '0'1034R:G 0 3 '0'936R:C 0 4 '0'937R:C 0 5 '0'938R:G 0 6 '0'939R:A 0 7 '0'940R:G 0 [Edges] 0 {'0'936R:C -> '0'937R:C: adjacent_5p upward } 0 1 {'0'937R:C -> '0'936R:C: adjacent_3p downward } 0 2 {'0'936R:C -> '0'1034R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1034R:G -> '0'936R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'937R:C -> '0'938R:G: adjacent_5p upward } 0 5 {'0'938R:G -> '0'937R:C: adjacent_3p downward } 0 6 {'0'937R:C -> '0'1033R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 7 {'0'1033R:C -> '0'937R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 8 {'0'938R:G -> '0'939R:A: adjacent_5p } 0 9 {'0'939R:A -> '0'938R:G: adjacent_3p } 0 10 {'0'938R:G -> '0'1032R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 11 {'0'1032R:A -> '0'938R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 12 {'0'939R:A -> '0'940R:G: adjacent_5p } 0 13 {'0'940R:G -> '0'939R:A: adjacent_3p } 0 14 {'0'939R:A -> '0'1032R:A: outward } 0 15 {'0'1032R:A -> '0'939R:A: outward } 0 16 {'0'940R:G -> '0'1032R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 17 {'0'1032R:A -> '0'940R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 18 {'0'1032R:A -> '0'1033R:C: adjacent_5p upward } 0 19 {'0'1033R:C -> '0'1032R:A: adjacent_3p downward } 0 20 {'0'1033R:C -> '0'1034R:G: adjacent_5p upward } 0 21 {'0'1034R:G -> '0'1033R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 14 . . . . 9 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 '0'1242R:A 0 1 '0'1243R:C 0 2 '0'1244R:U 0 3 '0'1118R:A 0 4 '0'1119R:G 0 5 '0'1120R:U 0 6 '0'1121R:G 0 7 '0'1122R:U 0 [Edges] 0 {'0'1118R:A -> '0'1119R:G: adjacent_5p } 0 1 {'0'1119R:G -> '0'1118R:A: adjacent_3p } 0 2 {'0'1118R:A -> '0'1120R:U: upward } 0 3 {'0'1120R:U -> '0'1118R:A: downward } 0 4 {'0'1118R:A -> '0'1244R:U: pairing antiparallel trans one_hbond 46 Bh/Ws } 0 5 {'0'1244R:U -> '0'1118R:A: pairing antiparallel trans one_hbond 46 Ws/Bh } 0 6 {'0'1119R:G -> '0'1120R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'1120R:U -> '0'1119R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'1119R:G -> '0'1243R:C: inward } 0 9 {'0'1243R:C -> '0'1119R:G: inward } 0 10 {'0'1119R:G -> '0'1244R:U: outward } 0 11 {'0'1244R:U -> '0'1119R:G: outward } 0 12 {'0'1120R:U -> '0'1121R:G: adjacent_5p upward } 0 13 {'0'1121R:G -> '0'1120R:U: adjacent_3p downward } 0 14 {'0'1121R:G -> '0'1122R:U: adjacent_5p upward } 0 15 {'0'1122R:U -> '0'1121R:G: adjacent_3p downward } 0 16 {'0'1121R:G -> '0'1243R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'1243R:C -> '0'1121R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'1122R:U -> '0'1242R:A: pairing antiparallel cis XX Ww/Ww } 0 19 {'0'1242R:A -> '0'1122R:U: pairing antiparallel cis XX Ww/Ww } 0 20 {'0'1242R:A -> '0'1243R:C: adjacent_5p upward } 0 21 {'0'1243R:C -> '0'1242R:A: adjacent_3p downward } 0 22 {'0'1243R:C -> '0'1244R:U: adjacent_5p } 0 23 {'0'1244R:U -> '0'1243R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 20 . . . . . 19 1 21 . 22 . 9 . 17 . 2 . 23 . 5 11 . . . 3 . . 4 . 0 2 . . 4 . 8 10 1 . 6 . . 5 . . . 3 7 . 12 . 6 . 16 . . . 13 . 14 7 18 . . . . . 15 . [GraphModel] [Vertices] 0 '0'1268R:C 0 1 '0'1269R:G 0 2 '0'1270R:U 0 3 '0'1286R:A 0 4 '0'1287R:A 0 5 '0'1288R:U 0 6 '0'1289R:C 0 7 '0'1290R:G 0 [Edges] 0 {'0'1268R:C -> '0'1269R:G: adjacent_5p } 0 1 {'0'1269R:G -> '0'1268R:C: adjacent_3p } 0 2 {'0'1268R:C -> '0'1290R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1290R:G -> '0'1268R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1269R:G -> '0'1270R:U: adjacent_5p upward } 0 5 {'0'1270R:U -> '0'1269R:G: adjacent_3p downward } 0 6 {'0'1269R:G -> '0'1289R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1289R:C -> '0'1269R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1269R:G -> '0'1290R:G: outward } 0 9 {'0'1290R:G -> '0'1269R:G: outward } 0 10 {'0'1270R:U -> '0'1286R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1286R:A -> '0'1270R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1286R:A -> '0'1287R:A: adjacent_5p } 0 13 {'0'1287R:A -> '0'1286R:A: adjacent_3p } 0 14 {'0'1286R:A -> '0'1289R:C: upward } 0 15 {'0'1289R:C -> '0'1286R:A: downward } 0 16 {'0'1287R:A -> '0'1288R:U: adjacent_5p upward } 0 17 {'0'1288R:U -> '0'1287R:A: adjacent_3p downward } 0 18 {'0'1288R:U -> '0'1289R:C: adjacent_5p } 0 19 {'0'1289R:C -> '0'1288R:U: adjacent_3p } 0 20 {'0'1289R:C -> '0'1290R:G: adjacent_5p upward } 0 21 {'0'1290R:G -> '0'1289R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . . . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 7 . 15 . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1269R:G 0 1 '0'1270R:U 0 2 '0'1271R:A 0 3 '0'1285R:U 0 4 '0'1286R:A 0 5 '0'1287R:A 0 6 '0'1288R:U 0 7 '0'1289R:C 0 [Edges] 0 {'0'1269R:G -> '0'1270R:U: adjacent_5p upward } 0 1 {'0'1270R:U -> '0'1269R:G: adjacent_3p downward } 0 2 {'0'1269R:G -> '0'1289R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1289R:C -> '0'1269R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1270R:U -> '0'1271R:A: adjacent_5p } 0 5 {'0'1271R:A -> '0'1270R:U: adjacent_3p } 0 6 {'0'1270R:U -> '0'1286R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1286R:A -> '0'1270R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1271R:A -> '0'1285R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'1285R:U -> '0'1271R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'1271R:A -> '0'1286R:A: outward } 0 11 {'0'1286R:A -> '0'1271R:A: outward } 0 12 {'0'1285R:U -> '0'1286R:A: adjacent_5p upward } 0 13 {'0'1286R:A -> '0'1285R:U: adjacent_3p downward } 0 14 {'0'1286R:A -> '0'1287R:A: adjacent_5p } 0 15 {'0'1287R:A -> '0'1286R:A: adjacent_3p } 0 16 {'0'1286R:A -> '0'1289R:C: upward } 0 17 {'0'1289R:C -> '0'1286R:A: downward } 0 18 {'0'1287R:A -> '0'1288R:U: adjacent_5p upward } 0 19 {'0'1288R:U -> '0'1287R:A: adjacent_3p downward } 0 20 {'0'1288R:U -> '0'1289R:C: adjacent_5p } 0 21 {'0'1289R:C -> '0'1288R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 10 . . . 3 . . 9 . 12 . . . 4 . 7 11 13 . 14 . 16 5 . . . . 15 . 18 . 6 . . . . . 19 . 20 7 3 . . . 17 . 21 . [GraphModel] [Vertices] 0 '0'1386R:G 0 1 '0'1387R:G 0 2 '0'1388R:U 0 3 '0'1392R:A 0 4 '0'1393R:A 0 5 '0'1394R:C 0 6 '0'1395R:C 0 7 '0'1396R:C 0 [Edges] 0 {'0'1386R:G -> '0'1387R:G: adjacent_5p upward } 0 1 {'0'1387R:G -> '0'1386R:G: adjacent_3p downward } 0 2 {'0'1386R:G -> '0'1396R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1396R:C -> '0'1386R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1387R:G -> '0'1388R:U: adjacent_5p upward } 0 5 {'0'1388R:U -> '0'1387R:G: adjacent_3p downward } 0 6 {'0'1387R:G -> '0'1395R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1395R:C -> '0'1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1387R:G -> '0'1396R:C: outward } 0 9 {'0'1396R:C -> '0'1387R:G: outward } 0 10 {'0'1388R:U -> '0'1392R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {'0'1392R:A -> '0'1388R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {'0'1392R:A -> '0'1393R:A: adjacent_5p } 0 13 {'0'1393R:A -> '0'1392R:A: adjacent_3p } 0 14 {'0'1392R:A -> '0'1395R:C: upward } 0 15 {'0'1395R:C -> '0'1392R:A: downward } 0 16 {'0'1393R:A -> '0'1394R:C: adjacent_5p upward } 0 17 {'0'1394R:C -> '0'1393R:A: adjacent_3p downward } 0 18 {'0'1394R:C -> '0'1395R:C: adjacent_5p } 0 19 {'0'1395R:C -> '0'1394R:C: adjacent_3p } 0 20 {'0'1395R:C -> '0'1396R:C: adjacent_5p upward } 0 21 {'0'1396R:C -> '0'1395R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . . . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 7 . 15 . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1437R:A 0 1 '0'1438R:G 0 2 '0'1439R:C 0 3 '0'1425R:G 0 4 '0'1426R:C 0 5 '0'1427R:A 0 6 '0'1428R:C 0 7 '0'1429R:U 0 [Edges] 0 {'0'1425R:G -> '0'1426R:C: adjacent_5p upward } 0 1 {'0'1426R:C -> '0'1425R:G: adjacent_3p downward } 0 2 {'0'1425R:G -> '0'1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1439R:C -> '0'1425R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1426R:C -> '0'1427R:A: adjacent_5p } 0 5 {'0'1427R:A -> '0'1426R:C: adjacent_3p } 0 6 {'0'1426R:C -> '0'1437R:A: pairing antiparallel trans XXV Ww/Hw } 0 7 {'0'1437R:A -> '0'1426R:C: pairing antiparallel trans XXV Hw/Ww } 0 8 {'0'1427R:A -> '0'1428R:C: adjacent_5p upward } 0 9 {'0'1428R:C -> '0'1427R:A: adjacent_3p downward } 0 10 {'0'1428R:C -> '0'1429R:U: adjacent_5p upward } 0 11 {'0'1429R:U -> '0'1428R:C: adjacent_3p downward } 0 12 {'0'1428R:C -> '0'1439R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 13 {'0'1439R:C -> '0'1428R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 14 {'0'1429R:U -> '0'1437R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1437R:A -> '0'1429R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1437R:A -> '0'1438R:G: adjacent_5p } 0 17 {'0'1438R:G -> '0'1437R:A: adjacent_3p } 0 18 {'0'1437R:A -> '0'1439R:C: upward } 0 19 {'0'1439R:C -> '0'1437R:A: downward } 0 20 {'0'1438R:G -> '0'1439R:C: adjacent_5p } 0 21 {'0'1439R:C -> '0'1438R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 18 . 7 . . 15 1 17 . 20 . . . . . 2 19 21 . 3 . . 13 . 3 . . 2 . 0 . . . 4 6 . . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . 12 . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 '0'1497R:G 0 1 '0'1498R:G 0 2 '0'1499R:U 0 3 '0'1504R:A 0 4 '0'1505R:U 0 5 '0'1506R:U 0 6 '0'1507R:C 0 7 '0'1508R:C 0 [Edges] 0 {'0'1497R:G -> '0'1498R:G: adjacent_5p upward } 0 1 {'0'1498R:G -> '0'1497R:G: adjacent_3p downward } 0 2 {'0'1497R:G -> '0'1508R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1508R:C -> '0'1497R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1498R:G -> '0'1499R:U: adjacent_5p upward } 0 5 {'0'1499R:U -> '0'1498R:G: adjacent_3p downward } 0 6 {'0'1498R:G -> '0'1507R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1507R:C -> '0'1498R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1499R:U -> '0'1504R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {'0'1504R:A -> '0'1499R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {'0'1504R:A -> '0'1505R:U: adjacent_5p } 0 11 {'0'1505R:U -> '0'1504R:A: adjacent_3p } 0 12 {'0'1504R:A -> '0'1507R:C: upward } 0 13 {'0'1507R:C -> '0'1504R:A: downward } 0 14 {'0'1505R:U -> '0'1506R:U: adjacent_5p } 0 15 {'0'1506R:U -> '0'1505R:U: adjacent_3p } 0 16 {'0'1506R:U -> '0'1507R:C: adjacent_5p } 0 17 {'0'1507R:C -> '0'1506R:U: adjacent_3p } 0 18 {'0'1507R:C -> '0'1508R:C: adjacent_5p upward } 0 19 {'0'1508R:C -> '0'1507R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1675R:C 0 1 '0'1676R:G 0 2 '0'1677R:U 0 3 '0'1448R:A 0 4 '0'1449R:G 0 5 '0'1450R:C 0 6 '0'1451R:C 0 7 '0'1452R:G 0 [Edges] 0 {'0'1448R:A -> '0'1449R:G: adjacent_5p } 0 1 {'0'1449R:G -> '0'1448R:A: adjacent_3p } 0 2 {'0'1448R:A -> '0'1451R:C: upward } 0 3 {'0'1451R:C -> '0'1448R:A: downward } 0 4 {'0'1448R:A -> '0'1677R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {'0'1677R:U -> '0'1448R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {'0'1449R:G -> '0'1450R:C: adjacent_5p upward } 0 7 {'0'1450R:C -> '0'1449R:G: adjacent_3p downward } 0 8 {'0'1450R:C -> '0'1451R:C: adjacent_5p } 0 9 {'0'1451R:C -> '0'1450R:C: adjacent_3p } 0 10 {'0'1451R:C -> '0'1452R:G: adjacent_5p upward } 0 11 {'0'1452R:G -> '0'1451R:C: adjacent_3p downward } 0 12 {'0'1451R:C -> '0'1676R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1676R:G -> '0'1451R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1452R:G -> '0'1675R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1675R:C -> '0'1452R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1452R:G -> '0'1676R:G: outward } 0 17 {'0'1676R:G -> '0'1452R:G: outward } 0 18 {'0'1675R:C -> '0'1676R:G: adjacent_5p } 0 19 {'0'1676R:G -> '0'1675R:C: adjacent_3p } 0 20 {'0'1676R:G -> '0'1677R:U: adjacent_5p upward } 0 21 {'0'1677R:U -> '0'1676R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . . . 13 17 2 . 21 . 5 . . . . 3 . . 4 . 0 . 2 . 4 . . . 1 . 6 . . 5 . . . . 7 . 8 . 6 . 12 . 3 . 9 . 10 7 14 16 . . . . 11 . [GraphModel] [Vertices] 0 '0'1678R:A 0 1 '0'1679R:C 0 2 '0'1680R:C 0 3 '0'1415R:G 0 4 '0'1416R:G 0 5 '0'1417R:G 0 6 '0'1418R:U 0 7 '0'1419R:U 0 [Edges] 0 {'0'1415R:G -> '0'1416R:G: adjacent_5p upward } 0 1 {'0'1416R:G -> '0'1415R:G: adjacent_3p downward } 0 2 {'0'1415R:G -> '0'1680R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1680R:C -> '0'1415R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1416R:G -> '0'1417R:G: adjacent_5p inward } 0 5 {'0'1417R:G -> '0'1416R:G: adjacent_3p inward } 0 6 {'0'1416R:G -> '0'1679R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1679R:C -> '0'1416R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1417R:G -> '0'1418R:U: adjacent_5p } 0 9 {'0'1418R:U -> '0'1417R:G: adjacent_3p } 0 10 {'0'1418R:U -> '0'1419R:U: adjacent_5p } 0 11 {'0'1419R:U -> '0'1418R:U: adjacent_3p } 0 12 {'0'1418R:U -> '0'1678R:A: outward } 0 13 {'0'1678R:A -> '0'1418R:U: outward } 0 14 {'0'1419R:U -> '0'1678R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1678R:A -> '0'1419R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1678R:A -> '0'1679R:C: adjacent_5p upward } 0 17 {'0'1679R:C -> '0'1678R:A: adjacent_3p downward } 0 18 {'0'1679R:C -> '0'1680R:C: adjacent_5p } 0 19 {'0'1680R:C -> '0'1679R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . 13 15 1 17 . 18 . 7 . . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 12 . . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 '0'1717R:A 0 1 '0'1718R:G 0 2 '0'1719R:G 0 3 '0'1403R:C 0 4 '0'1404R:C 0 5 '0'1405R:U 0 6 '0'1406R:A 0 7 '0'1407R:A 0 [Edges] 0 {'0'1403R:C -> '0'1404R:C: adjacent_5p } 0 1 {'0'1404R:C -> '0'1403R:C: adjacent_3p } 0 2 {'0'1403R:C -> '0'1719R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1719R:G -> '0'1403R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1404R:C -> '0'1405R:U: adjacent_5p } 0 5 {'0'1405R:U -> '0'1404R:C: adjacent_3p } 0 6 {'0'1404R:C -> '0'1718R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1718R:G -> '0'1404R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1405R:U -> '0'1406R:A: adjacent_5p } 0 9 {'0'1406R:A -> '0'1405R:U: adjacent_3p } 0 10 {'0'1406R:A -> '0'1407R:A: adjacent_5p } 0 11 {'0'1407R:A -> '0'1406R:A: adjacent_3p } 0 12 {'0'1407R:A -> '0'1717R:A: pairing parallel trans I Ww/Ww } 0 13 {'0'1717R:A -> '0'1407R:A: pairing parallel trans I Ww/Ww } 0 14 {'0'1717R:A -> '0'1718R:G: adjacent_5p upward } 0 15 {'0'1718R:G -> '0'1717R:A: adjacent_3p downward } 0 16 {'0'1718R:G -> '0'1719R:G: adjacent_5p upward } 0 17 {'0'1719R:G -> '0'1718R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 '0'1854R:C 0 1 '0'1855R:G 0 2 '0'1856R:C 0 3 '0'1873R:G 0 4 '0'1874R:U 0 5 '0'1875R:A 0 6 '0'1876R:C 0 7 '0'1877R:G 0 [Edges] 0 {'0'1854R:C -> '0'1855R:G: adjacent_5p } 0 1 {'0'1855R:G -> '0'1854R:C: adjacent_3p } 0 2 {'0'1854R:C -> '0'1875R:A: upward } 0 3 {'0'1875R:A -> '0'1854R:C: downward } 0 4 {'0'1854R:C -> '0'1877R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'1877R:G -> '0'1854R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1855R:G -> '0'1856R:C: adjacent_5p } 0 7 {'0'1856R:C -> '0'1855R:G: adjacent_3p } 0 8 {'0'1855R:G -> '0'1875R:A: downward } 0 9 {'0'1875R:A -> '0'1855R:G: upward } 0 10 {'0'1856R:C -> '0'1873R:G: pairing parallel trans XXII Ww/Ww } 0 11 {'0'1873R:G -> '0'1856R:C: pairing parallel trans XXII Ww/Ww } 0 12 {'0'1856R:C -> '0'1875R:A: pairing parallel trans one_hbond Hw/Hh } 0 13 {'0'1875R:A -> '0'1856R:C: pairing parallel trans one_hbond Hh/Hw } 0 14 {'0'1873R:G -> '0'1874R:U: adjacent_5p upward } 0 15 {'0'1874R:U -> '0'1873R:G: adjacent_3p downward } 0 16 {'0'1874R:U -> '0'1875R:A: adjacent_5p } 0 17 {'0'1875R:A -> '0'1874R:U: adjacent_3p } 0 18 {'0'1875R:A -> '0'1876R:C: adjacent_5p } 0 19 {'0'1876R:C -> '0'1875R:A: adjacent_3p } 0 20 {'0'1875R:A -> '0'1877R:G: outward } 0 21 {'0'1877R:G -> '0'1875R:A: outward } 0 22 {'0'1876R:C -> '0'1877R:G: adjacent_5p } 0 23 {'0'1877R:G -> '0'1876R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . . 8 . . 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 3 9 13 . 17 . 18 20 6 . . . . . 19 . 22 7 5 . . . . 21 23 . [GraphModel] [Vertices] 0 '0'1856R:C 0 1 '0'1857R:A 0 2 '0'1858R:A 0 3 '0'1871R:U 0 4 '0'1872R:C 0 5 '0'1873R:G 0 6 '0'1874R:U 0 7 '0'1875R:A 0 [Edges] 0 {'0'1856R:C -> '0'1857R:A: adjacent_5p } 0 1 {'0'1857R:A -> '0'1856R:C: adjacent_3p } 0 2 {'0'1856R:C -> '0'1858R:A: outward } 0 3 {'0'1858R:A -> '0'1856R:C: outward } 0 4 {'0'1856R:C -> '0'1873R:G: pairing parallel trans XXII Ww/Ww } 0 5 {'0'1873R:G -> '0'1856R:C: pairing parallel trans XXII Ww/Ww } 0 6 {'0'1856R:C -> '0'1875R:A: pairing parallel trans one_hbond Hw/Hh } 0 7 {'0'1875R:A -> '0'1856R:C: pairing parallel trans one_hbond Hh/Hw } 0 8 {'0'1857R:A -> '0'1858R:A: adjacent_5p } 0 9 {'0'1858R:A -> '0'1857R:A: adjacent_3p } 0 10 {'0'1858R:A -> '0'1871R:U: pairing parallel trans one_hbond 50 Hw/Hw } 0 11 {'0'1871R:U -> '0'1858R:A: pairing parallel trans one_hbond 50 Hw/Hw } 0 12 {'0'1871R:U -> '0'1872R:C: adjacent_5p } 0 13 {'0'1872R:C -> '0'1871R:U: adjacent_3p } 0 14 {'0'1871R:U -> '0'1873R:G: outward } 0 15 {'0'1873R:G -> '0'1871R:U: outward } 0 16 {'0'1872R:C -> '0'1873R:G: adjacent_5p } 0 17 {'0'1873R:G -> '0'1872R:C: adjacent_3p } 0 18 {'0'1873R:G -> '0'1874R:U: adjacent_5p upward } 0 19 {'0'1874R:U -> '0'1873R:G: adjacent_3p downward } 0 20 {'0'1874R:U -> '0'1875R:A: adjacent_5p } 0 21 {'0'1875R:A -> '0'1874R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . 4 . 6 1 1 . 8 . . . . . 2 3 9 . 10 . . . . 3 . . 11 . 12 14 . . 4 . . . 13 . 16 . . 5 5 . . 15 17 . 18 . 6 . . . . . 19 . 20 7 7 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1896R:G 0 1 '0'1897R:U 0 2 '0'1898R:G 0 3 '0'1939R:U 0 4 '0'1940R:C 0 5 '0'1941R:A 0 6 '0'1942R:A 0 7 '0'1943R:C 0 [Edges] 0 {'0'1896R:G -> '0'1897R:U: adjacent_5p upward } 0 1 {'0'1897R:U -> '0'1896R:G: adjacent_3p downward } 0 2 {'0'1896R:G -> '0'1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1943R:C -> '0'1896R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1897R:U -> '0'1898R:G: adjacent_5p upward } 0 5 {'0'1898R:G -> '0'1897R:U: adjacent_3p downward } 0 6 {'0'1897R:U -> '0'1942R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1942R:A -> '0'1897R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1898R:G -> '0'1939R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {'0'1939R:U -> '0'1898R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {'0'1898R:G -> '0'1942R:A: outward } 0 11 {'0'1942R:A -> '0'1898R:G: outward } 0 12 {'0'1939R:U -> '0'1940R:C: adjacent_5p } 0 13 {'0'1940R:C -> '0'1939R:U: adjacent_3p } 0 14 {'0'1940R:C -> '0'1941R:A: adjacent_5p } 0 15 {'0'1941R:A -> '0'1940R:C: adjacent_3p } 0 16 {'0'1940R:C -> '0'1943R:C: pairing parallel cis one_hbond 134 Ws/Hw } 0 17 {'0'1943R:C -> '0'1940R:C: pairing parallel cis one_hbond 134 Hw/Ws } 0 18 {'0'1941R:A -> '0'1942R:A: adjacent_5p } 0 19 {'0'1942R:A -> '0'1941R:A: adjacent_3p } 0 20 {'0'1942R:A -> '0'1943R:C: adjacent_5p upward } 0 21 {'0'1943R:C -> '0'1942R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . 16 5 . . . . 15 . 18 . 6 . 7 11 . . 19 . 20 7 3 . . . 17 . 21 . [GraphModel] [Vertices] 0 '0'1897R:U 0 1 '0'1898R:G 0 2 '0'1899R:C 0 3 '0'1938R:G 0 4 '0'1939R:U 0 5 '0'1940R:C 0 6 '0'1941R:A 0 7 '0'1942R:A 0 [Edges] 0 {'0'1897R:U -> '0'1898R:G: adjacent_5p upward } 0 1 {'0'1898R:G -> '0'1897R:U: adjacent_3p downward } 0 2 {'0'1897R:U -> '0'1942R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1942R:A -> '0'1897R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1898R:G -> '0'1899R:C: adjacent_5p upward } 0 5 {'0'1899R:C -> '0'1898R:G: adjacent_3p downward } 0 6 {'0'1898R:G -> '0'1939R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1939R:U -> '0'1898R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1898R:G -> '0'1942R:A: outward } 0 9 {'0'1942R:A -> '0'1898R:G: outward } 0 10 {'0'1899R:C -> '0'1938R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1938R:G -> '0'1899R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1938R:G -> '0'1939R:U: adjacent_5p upward } 0 13 {'0'1939R:U -> '0'1938R:G: adjacent_3p downward } 0 14 {'0'1939R:U -> '0'1940R:C: adjacent_5p } 0 15 {'0'1940R:C -> '0'1939R:U: adjacent_3p } 0 16 {'0'1940R:C -> '0'1941R:A: adjacent_5p } 0 17 {'0'1941R:A -> '0'1940R:C: adjacent_3p } 0 18 {'0'1941R:A -> '0'1942R:A: adjacent_5p } 0 19 {'0'1942R:A -> '0'1941R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 '0'1932R:G 0 1 '0'1933R:G 0 2 '0'1934R:A 0 3 '0'1903R:U 0 4 '0'1904R:A 0 5 '0'1905R:U 0 6 '0'1906R:C 0 7 '0'1907R:U 0 [Edges] 0 {'0'1903R:U -> '0'1904R:A: adjacent_5p } 0 1 {'0'1904R:A -> '0'1903R:U: adjacent_3p } 0 2 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {'0'1904R:A -> '0'1905R:U: adjacent_5p upward } 0 5 {'0'1905R:U -> '0'1904R:A: adjacent_3p downward } 0 6 {'0'1905R:U -> '0'1906R:C: adjacent_5p upward } 0 7 {'0'1906R:C -> '0'1905R:U: adjacent_3p downward } 0 8 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'1906R:C -> '0'1907R:U: adjacent_5p upward } 0 11 {'0'1907R:U -> '0'1906R:C: adjacent_3p downward } 0 12 {'0'1906R:C -> '0'1933R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1933R:G -> '0'1906R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1906R:C -> '0'1934R:A: outward } 0 15 {'0'1934R:A -> '0'1906R:C: outward } 0 16 {'0'1907R:U -> '0'1932R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 17 {'0'1932R:G -> '0'1907R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 18 {'0'1932R:G -> '0'1933R:G: adjacent_5p upward } 0 19 {'0'1933R:G -> '0'1932R:G: adjacent_3p downward } 0 20 {'0'1933R:G -> '0'1934R:A: adjacent_5p upward } 0 21 {'0'1934R:A -> '0'1933R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . . . 13 . 2 . 21 . 3 . 9 15 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . 8 . 5 . 6 . 6 . 12 14 . . 7 . 10 7 16 . . . . . 11 . [GraphModel] [Vertices] 0 '0'1933R:G 0 1 '0'1934R:A 0 2 '0'1935R:C 0 3 '0'1902R:G 0 4 '0'1903R:U 0 5 '0'1904R:A 0 6 '0'1905R:U 0 7 '0'1906R:C 0 [Edges] 0 {'0'1902R:G -> '0'1903R:U: adjacent_5p upward } 0 1 {'0'1903R:U -> '0'1902R:G: adjacent_3p downward } 0 2 {'0'1902R:G -> '0'1935R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1935R:C -> '0'1902R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1903R:U -> '0'1904R:A: adjacent_5p } 0 5 {'0'1904R:A -> '0'1903R:U: adjacent_3p } 0 6 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 7 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 8 {'0'1904R:A -> '0'1905R:U: adjacent_5p upward } 0 9 {'0'1905R:U -> '0'1904R:A: adjacent_3p downward } 0 10 {'0'1905R:U -> '0'1906R:C: adjacent_5p upward } 0 11 {'0'1906R:C -> '0'1905R:U: adjacent_3p downward } 0 12 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1906R:C -> '0'1933R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1933R:G -> '0'1906R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1906R:C -> '0'1934R:A: outward } 0 17 {'0'1934R:A -> '0'1906R:C: outward } 0 18 {'0'1933R:G -> '0'1934R:A: adjacent_5p upward } 0 19 {'0'1934R:A -> '0'1933R:G: adjacent_3p downward } 0 20 {'0'1934R:A -> '0'1935R:C: adjacent_5p upward } 0 21 {'0'1935R:C -> '0'1934R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . 7 . 13 17 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . 12 . . . 9 . 10 7 14 16 . . . . 11 . [GraphModel] [Vertices] 0 '0'1934R:A 0 1 '0'1935R:C 0 2 '0'1936R:C 0 3 '0'1901R:G 0 4 '0'1902R:G 0 5 '0'1903R:U 0 6 '0'1904R:A 0 7 '0'1905R:U 0 [Edges] 0 {'0'1901R:G -> '0'1902R:G: adjacent_5p upward } 0 1 {'0'1902R:G -> '0'1901R:G: adjacent_3p downward } 0 2 {'0'1901R:G -> '0'1936R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1936R:C -> '0'1901R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1902R:G -> '0'1903R:U: adjacent_5p upward } 0 5 {'0'1903R:U -> '0'1902R:G: adjacent_3p downward } 0 6 {'0'1902R:G -> '0'1935R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1935R:C -> '0'1902R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1903R:U -> '0'1904R:A: adjacent_5p } 0 9 {'0'1904R:A -> '0'1903R:U: adjacent_3p } 0 10 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 11 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 12 {'0'1904R:A -> '0'1905R:U: adjacent_5p upward } 0 13 {'0'1905R:U -> '0'1904R:A: adjacent_3p downward } 0 14 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1934R:A -> '0'1935R:C: adjacent_5p upward } 0 17 {'0'1935R:C -> '0'1934R:A: adjacent_3p downward } 0 18 {'0'1935R:C -> '0'1936R:C: adjacent_5p upward } 0 19 {'0'1936R:C -> '0'1935R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . 11 . 15 1 17 . 18 . 7 . . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 . . . . . 9 . 12 7 14 . . . . . 13 . [GraphModel] [Vertices] 0 '0'1942R:A 0 1 '0'1943R:C 0 2 '0'1944R:G 0 3 '0'1893R:C 0 4 '0'1894R:C 0 5 '0'1895R:A 0 6 '0'1896R:G 0 7 '0'1897R:U 0 [Edges] 0 {'0'1893R:C -> '0'1894R:C: adjacent_5p } 0 1 {'0'1894R:C -> '0'1893R:C: adjacent_3p } 0 2 {'0'1893R:C -> '0'1944R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1944R:G -> '0'1893R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1894R:C -> '0'1895R:A: adjacent_5p } 0 5 {'0'1895R:A -> '0'1894R:C: adjacent_3p } 0 6 {'0'1894R:C -> '0'1942R:A: pairing antiparallel trans XXV Ww/Hw } 0 7 {'0'1942R:A -> '0'1894R:C: pairing antiparallel trans XXV Hw/Ww } 0 8 {'0'1895R:A -> '0'1896R:G: adjacent_5p upward } 0 9 {'0'1896R:G -> '0'1895R:A: adjacent_3p downward } 0 10 {'0'1896R:G -> '0'1897R:U: adjacent_5p upward } 0 11 {'0'1897R:U -> '0'1896R:G: adjacent_3p downward } 0 12 {'0'1896R:G -> '0'1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1943R:C -> '0'1896R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1897R:U -> '0'1942R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1942R:A -> '0'1897R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1942R:A -> '0'1943R:C: adjacent_5p upward } 0 17 {'0'1943R:C -> '0'1942R:A: adjacent_3p downward } 0 18 {'0'1943R:C -> '0'1944R:G: adjacent_5p upward } 0 19 {'0'1944R:G -> '0'1943R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . 7 . . 15 1 17 . 18 . . . 13 . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 6 . . 1 . 4 . . 5 . . . . 5 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 '0'1943R:C 0 1 '0'1944R:G 0 2 '0'1945R:G 0 3 '0'1892R:C 0 4 '0'1893R:C 0 5 '0'1894R:C 0 6 '0'1895R:A 0 7 '0'1896R:G 0 [Edges] 0 {'0'1892R:C -> '0'1893R:C: adjacent_5p upward } 0 1 {'0'1893R:C -> '0'1892R:C: adjacent_3p downward } 0 2 {'0'1892R:C -> '0'1945R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1945R:G -> '0'1892R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1893R:C -> '0'1894R:C: adjacent_5p } 0 5 {'0'1894R:C -> '0'1893R:C: adjacent_3p } 0 6 {'0'1893R:C -> '0'1944R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1944R:G -> '0'1893R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1894R:C -> '0'1895R:A: adjacent_5p } 0 9 {'0'1895R:A -> '0'1894R:C: adjacent_3p } 0 10 {'0'1895R:A -> '0'1896R:G: adjacent_5p upward } 0 11 {'0'1896R:G -> '0'1895R:A: adjacent_3p downward } 0 12 {'0'1896R:G -> '0'1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1943R:C -> '0'1896R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1943R:C -> '0'1944R:G: adjacent_5p upward } 0 15 {'0'1944R:G -> '0'1943R:C: adjacent_3p downward } 0 16 {'0'1944R:G -> '0'1945R:G: adjacent_5p upward } 0 17 {'0'1945R:G -> '0'1944R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 '0'1945R:G 0 1 '0'1946R:C 0 2 '0'1947R:G 0 3 '0'1965R:C 0 4 '0'1966R:U 0 5 '0'1967R:U 0 6 '0'1968R:A 0 7 '0'1969R:A 0 [Edges] 0 {'0'1945R:G -> '0'1946R:C: adjacent_5p upward } 0 1 {'0'1946R:C -> '0'1945R:G: adjacent_3p downward } 0 2 {'0'1945R:G -> '0'1969R:A: pairing parallel trans one_hbond 57 Ss/Ss } 0 3 {'0'1969R:A -> '0'1945R:G: pairing parallel trans one_hbond 57 Ss/Ss } 0 4 {'0'1946R:C -> '0'1947R:G: adjacent_5p } 0 5 {'0'1947R:G -> '0'1946R:C: adjacent_3p } 0 6 {'0'1947R:G -> '0'1965R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1965R:C -> '0'1947R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1965R:C -> '0'1966R:U: adjacent_5p upward } 0 9 {'0'1966R:U -> '0'1965R:C: adjacent_3p downward } 0 10 {'0'1966R:U -> '0'1967R:U: adjacent_5p } 0 11 {'0'1967R:U -> '0'1966R:U: adjacent_3p } 0 12 {'0'1967R:U -> '0'1968R:A: adjacent_5p } 0 13 {'0'1968R:A -> '0'1967R:U: adjacent_3p } 0 14 {'0'1967R:U -> '0'1969R:A: pairing parallel cis one_hbond 47 Ws/Hw } 0 15 {'0'1969R:A -> '0'1967R:U: pairing parallel cis one_hbond 47 Hw/Ws } 0 16 {'0'1968R:A -> '0'1969R:A: adjacent_5p upward } 0 17 {'0'1969R:A -> '0'1968R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 14 6 . . . . . 13 . 16 7 3 . . . . 15 17 . [GraphModel] [Vertices] 0 '0'1973R:A 0 1 '0'1974R:G 0 2 '0'1975R:C 0 3 '0'2005R:G 0 4 '0'2006R:C 0 5 '0'2007R:A 0 6 '0'2008R:U 0 7 '0'2009R:G 0 [Edges] 0 {'0'1973R:A -> '0'1974R:G: adjacent_5p upward } 0 1 {'0'1974R:G -> '0'1973R:A: adjacent_3p downward } 0 2 {'0'1973R:A -> '0'2009R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2009R:G -> '0'1973R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1974R:G -> '0'1975R:C: adjacent_5p upward } 0 5 {'0'1975R:C -> '0'1974R:G: adjacent_3p downward } 0 6 {'0'1974R:G -> '0'2008R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'2008R:U -> '0'1974R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1975R:C -> '0'2005R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2005R:G -> '0'1975R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2005R:G -> '0'2006R:C: adjacent_5p } 0 11 {'0'2006R:C -> '0'2005R:G: adjacent_3p } 0 12 {'0'2005R:G -> '0'2008R:U: upward } 0 13 {'0'2008R:U -> '0'2005R:G: downward } 0 14 {'0'2006R:C -> '0'2007R:A: adjacent_5p inward } 0 15 {'0'2007R:A -> '0'2006R:C: adjacent_3p inward } 0 16 {'0'2007R:A -> '0'2008R:U: adjacent_5p } 0 17 {'0'2008R:U -> '0'2007R:A: adjacent_3p } 0 18 {'0'2008R:U -> '0'2009R:G: adjacent_5p upward } 0 19 {'0'2009R:G -> '0'2008R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2034R:U 0 1 '0'2035R:C 0 2 '0'2036R:C 0 3 '0'1743R:G 0 4 '0'1744R:G 0 5 '0'1745R:G 0 6 '0'1746R:A 0 7 '0'1747R:A 0 [Edges] 0 {'0'1743R:G -> '0'1744R:G: adjacent_5p upward } 0 1 {'0'1744R:G -> '0'1743R:G: adjacent_3p downward } 0 2 {'0'1743R:G -> '0'2036R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2036R:C -> '0'1743R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1744R:G -> '0'1745R:G: adjacent_5p } 0 5 {'0'1745R:G -> '0'1744R:G: adjacent_3p } 0 6 {'0'1744R:G -> '0'2035R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2035R:C -> '0'1744R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1745R:G -> '0'1746R:A: adjacent_5p } 0 9 {'0'1746R:A -> '0'1745R:G: adjacent_3p } 0 10 {'0'1745R:G -> '0'2034R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 11 {'0'2034R:U -> '0'1745R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 12 {'0'1746R:A -> '0'1747R:A: adjacent_5p } 0 13 {'0'1747R:A -> '0'1746R:A: adjacent_3p } 0 14 {'0'1746R:A -> '0'2034R:U: outward } 0 15 {'0'2034R:U -> '0'1746R:A: outward } 0 16 {'0'1747R:A -> '0'2034R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'2034R:U -> '0'1747R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'2034R:U -> '0'2035R:C: adjacent_5p upward } 0 19 {'0'2035R:C -> '0'2034R:U: adjacent_3p downward } 0 20 {'0'2035R:C -> '0'2036R:C: adjacent_5p } 0 21 {'0'2036R:C -> '0'2035R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 14 . . . . 9 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 '0'2067R:A 0 1 '0'2068R:G 0 2 '0'2069R:U 0 3 '0'2074R:A 0 4 '0'2075R:G 0 5 '0'2076R:U 0 6 '0'2077R:C 0 7 '0'2078R:U 0 [Edges] 0 {'0'2067R:A -> '0'2068R:G: adjacent_5p upward } 0 1 {'0'2068R:G -> '0'2067R:A: adjacent_3p downward } 0 2 {'0'2067R:A -> '0'2078R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2078R:U -> '0'2067R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2068R:G -> '0'2069R:U: adjacent_5p upward } 0 5 {'0'2069R:U -> '0'2068R:G: adjacent_3p downward } 0 6 {'0'2068R:G -> '0'2077R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2077R:C -> '0'2068R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2069R:U -> '0'2074R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {'0'2074R:A -> '0'2069R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {'0'2074R:A -> '0'2075R:G: adjacent_5p } 0 11 {'0'2075R:G -> '0'2074R:A: adjacent_3p } 0 12 {'0'2074R:A -> '0'2077R:C: upward } 0 13 {'0'2077R:C -> '0'2074R:A: downward } 0 14 {'0'2075R:G -> '0'2076R:U: adjacent_5p upward } 0 15 {'0'2076R:U -> '0'2075R:G: adjacent_3p downward } 0 16 {'0'2076R:U -> '0'2077R:C: adjacent_5p } 0 17 {'0'2077R:C -> '0'2076R:U: adjacent_3p } 0 18 {'0'2077R:C -> '0'2078R:U: adjacent_5p upward } 0 19 {'0'2078R:U -> '0'2077R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2110R:G 0 1 '0'2111R:G 0 2 '0'2112R:A 0 3 '0'2473R:U 0 4 '0'2474R:A 0 5 '0'2475R:C 0 6 '0'2476R:C 0 7 '0'2477R:C 0 [Edges] 0 {'0'2110R:G -> '0'2111R:G: adjacent_5p upward } 0 1 {'0'2111R:G -> '0'2110R:G: adjacent_3p downward } 0 2 {'0'2110R:G -> '0'2477R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2477R:C -> '0'2110R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2111R:G -> '0'2112R:A: adjacent_5p upward } 0 5 {'0'2112R:A -> '0'2111R:G: adjacent_3p downward } 0 6 {'0'2111R:G -> '0'2476R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2476R:C -> '0'2111R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2111R:G -> '0'2477R:C: outward } 0 9 {'0'2477R:C -> '0'2111R:G: outward } 0 10 {'0'2112R:A -> '0'2473R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2473R:U -> '0'2112R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2473R:U -> '0'2474R:A: adjacent_5p } 0 13 {'0'2474R:A -> '0'2473R:U: adjacent_3p } 0 14 {'0'2474R:A -> '0'2475R:C: adjacent_5p } 0 15 {'0'2475R:C -> '0'2474R:A: adjacent_3p } 0 16 {'0'2475R:C -> '0'2476R:C: adjacent_5p } 0 17 {'0'2476R:C -> '0'2475R:C: adjacent_3p } 0 18 {'0'2476R:C -> '0'2477R:C: adjacent_5p } 0 19 {'0'2477R:C -> '0'2476R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 '0'2111R:G 0 1 '0'2112R:A 0 2 '0'2113R:G 0 3 '0'2472R:C 0 4 '0'2473R:U 0 5 '0'2474R:A 0 6 '0'2475R:C 0 7 '0'2476R:C 0 [Edges] 0 {'0'2111R:G -> '0'2112R:A: adjacent_5p upward } 0 1 {'0'2112R:A -> '0'2111R:G: adjacent_3p downward } 0 2 {'0'2111R:G -> '0'2476R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2476R:C -> '0'2111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2112R:A -> '0'2113R:G: adjacent_5p upward } 0 5 {'0'2113R:G -> '0'2112R:A: adjacent_3p downward } 0 6 {'0'2112R:A -> '0'2473R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2473R:U -> '0'2112R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2113R:G -> '0'2472R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2472R:C -> '0'2113R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2472R:C -> '0'2473R:U: adjacent_5p upward } 0 11 {'0'2473R:U -> '0'2472R:C: adjacent_3p downward } 0 12 {'0'2473R:U -> '0'2474R:A: adjacent_5p } 0 13 {'0'2474R:A -> '0'2473R:U: adjacent_3p } 0 14 {'0'2474R:A -> '0'2475R:C: adjacent_5p } 0 15 {'0'2475R:C -> '0'2474R:A: adjacent_3p } 0 16 {'0'2475R:C -> '0'2476R:C: adjacent_5p } 0 17 {'0'2476R:C -> '0'2475R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'2244R:A 0 1 '0'2245R:C 0 2 '0'2246R:U 0 3 '0'2255R:A 0 4 '0'2256R:G 0 5 '0'2257R:G 0 6 '0'2258R:A 0 7 '0'2259R:C 0 [Edges] 0 {'0'2244R:A -> '0'2245R:C: adjacent_5p upward } 0 1 {'0'2245R:C -> '0'2244R:A: adjacent_3p downward } 0 2 {'0'2244R:A -> '0'2257R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2257R:G -> '0'2244R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2244R:A -> '0'2258R:A: outward } 0 5 {'0'2258R:A -> '0'2244R:A: outward } 0 6 {'0'2244R:A -> '0'2259R:C: pairing parallel trans one_hbond 70 Ww/Hw } 0 7 {'0'2259R:C -> '0'2244R:A: pairing parallel trans one_hbond 70 Hw/Ww } 0 8 {'0'2245R:C -> '0'2246R:U: adjacent_5p upward } 0 9 {'0'2246R:U -> '0'2245R:C: adjacent_3p downward } 0 10 {'0'2245R:C -> '0'2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2256R:G -> '0'2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2246R:U -> '0'2255R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2255R:A -> '0'2246R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2255R:A -> '0'2256R:G: adjacent_5p upward } 0 15 {'0'2256R:G -> '0'2255R:A: adjacent_3p downward } 0 16 {'0'2256R:G -> '0'2257R:G: adjacent_5p upward } 0 17 {'0'2257R:G -> '0'2256R:G: adjacent_3p downward } 0 18 {'0'2257R:G -> '0'2258R:A: adjacent_5p } 0 19 {'0'2258R:A -> '0'2257R:G: adjacent_3p } 0 20 {'0'2258R:A -> '0'2259R:C: adjacent_5p } 0 21 {'0'2259R:C -> '0'2258R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 4 6 1 1 . 8 . 10 . . . 2 . 9 . 12 . . . . 3 . . 13 . 14 . . . 4 . 11 . 15 . 16 . . 5 3 . . . 17 . 18 . 6 5 . . . . 19 . 20 7 7 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2331R:C 0 1 '0'2332R:A 0 2 '0'2333R:G 0 3 '0'2351R:C 0 4 '0'2352R:G 0 5 '0'2353R:A 0 6 '0'2354R:A 0 7 '0'2355R:G 0 [Edges] 0 {'0'2331R:C -> '0'2332R:A: adjacent_5p upward } 0 1 {'0'2332R:A -> '0'2331R:C: adjacent_3p downward } 0 2 {'0'2331R:C -> '0'2355R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2355R:G -> '0'2331R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2332R:A -> '0'2333R:G: adjacent_5p upward } 0 5 {'0'2333R:G -> '0'2332R:A: adjacent_3p downward } 0 6 {'0'2332R:A -> '0'2352R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'2352R:G -> '0'2332R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'2332R:A -> '0'2355R:G: outward } 0 9 {'0'2355R:G -> '0'2332R:A: outward } 0 10 {'0'2333R:G -> '0'2351R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2351R:C -> '0'2333R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2351R:C -> '0'2352R:G: adjacent_5p upward } 0 13 {'0'2352R:G -> '0'2351R:C: adjacent_3p downward } 0 14 {'0'2352R:G -> '0'2353R:A: adjacent_5p } 0 15 {'0'2353R:A -> '0'2352R:G: adjacent_3p } 0 16 {'0'2353R:A -> '0'2354R:A: adjacent_5p downward } 0 17 {'0'2354R:A -> '0'2353R:A: adjacent_3p upward } 0 18 {'0'2354R:A -> '0'2355R:G: adjacent_5p } 0 19 {'0'2355R:G -> '0'2354R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 '0'2356R:A 0 1 '0'2357R:G 0 2 '0'2358R:U 0 3 '0'2365R:G 0 4 '0'2366R:C 0 5 '0'2367R:A 0 6 '0'2368R:A 0 7 '0'2369R:A 0 [Edges] 0 {'0'2356R:A -> '0'2357R:G: adjacent_5p upward } 0 1 {'0'2357R:G -> '0'2356R:A: adjacent_3p downward } 0 2 {'0'2356R:A -> '0'2369R:A: pairing parallel trans I Ww/Ww } 0 3 {'0'2369R:A -> '0'2356R:A: pairing parallel trans I Ww/Ww } 0 4 {'0'2357R:G -> '0'2358R:U: adjacent_5p upward } 0 5 {'0'2358R:U -> '0'2357R:G: adjacent_3p downward } 0 6 {'0'2357R:G -> '0'2366R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2366R:C -> '0'2357R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2358R:U -> '0'2365R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {'0'2365R:G -> '0'2358R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {'0'2365R:G -> '0'2366R:C: adjacent_5p upward } 0 11 {'0'2366R:C -> '0'2365R:G: adjacent_3p downward } 0 12 {'0'2366R:C -> '0'2367R:A: adjacent_5p } 0 13 {'0'2367R:A -> '0'2366R:C: adjacent_3p } 0 14 {'0'2367R:A -> '0'2368R:A: adjacent_5p } 0 15 {'0'2368R:A -> '0'2367R:A: adjacent_3p } 0 16 {'0'2367R:A -> '0'2369R:A: outward } 0 17 {'0'2369R:A -> '0'2367R:A: outward } 0 18 {'0'2368R:A -> '0'2369R:A: adjacent_5p } 0 19 {'0'2369R:A -> '0'2368R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 16 6 . . . . . 15 . 18 7 3 . . . . 17 19 . [GraphModel] [Vertices] 0 '0'2484R:U 0 1 '0'2485R:A 0 2 '0'2486R:A 0 3 '0'2102R:G 0 4 '0'2103R:A 0 5 '0'2104R:C 0 6 '0'2105R:C 0 7 '0'2106R:C 0 [Edges] 0 {'0'2102R:G -> '0'2103R:A: adjacent_5p } 0 1 {'0'2103R:A -> '0'2102R:G: adjacent_3p } 0 2 {'0'2102R:G -> '0'2104R:C: upward } 0 3 {'0'2104R:C -> '0'2102R:G: downward } 0 4 {'0'2102R:G -> '0'2486R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 5 {'0'2486R:A -> '0'2102R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 6 {'0'2103R:A -> '0'2104R:C: adjacent_5p } 0 7 {'0'2104R:C -> '0'2103R:A: adjacent_3p } 0 8 {'0'2104R:C -> '0'2105R:C: adjacent_5p upward } 0 9 {'0'2105R:C -> '0'2104R:C: adjacent_3p downward } 0 10 {'0'2104R:C -> '0'2485R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 11 {'0'2485R:A -> '0'2104R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 12 {'0'2105R:C -> '0'2106R:C: adjacent_5p upward } 0 13 {'0'2106R:C -> '0'2105R:C: adjacent_3p downward } 0 14 {'0'2106R:C -> '0'2484R:U: pairing antiparallel cis one_hbond Ss/Ww } 0 15 {'0'2484R:U -> '0'2106R:C: pairing antiparallel cis one_hbond Ww/Ss } 0 16 {'0'2484R:U -> '0'2485R:A: adjacent_5p } 0 17 {'0'2485R:A -> '0'2484R:U: adjacent_3p } 0 18 {'0'2485R:A -> '0'2486R:A: adjacent_5p upward } 0 19 {'0'2486R:A -> '0'2485R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . 11 . . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . 10 . 3 7 . 8 . 6 . . . . . 9 . 12 7 14 . . . . . 13 . [GraphModel] [Vertices] 0 '0'2494R:G 0 1 '0'2495R:U 0 2 '0'2496R:C 0 3 '0'2524R:G 0 4 '0'2525R:G 0 5 '0'2526R:C 0 6 '0'2527R:U 0 7 '0'2528R:U 0 [Edges] 0 {'0'2494R:G -> '0'2495R:U: adjacent_5p upward } 0 1 {'0'2495R:U -> '0'2494R:G: adjacent_3p downward } 0 2 {'0'2494R:G -> '0'2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2528R:U -> '0'2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'2495R:U -> '0'2496R:C: adjacent_5p upward } 0 5 {'0'2496R:C -> '0'2495R:U: adjacent_3p downward } 0 6 {'0'2495R:U -> '0'2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 7 {'0'2525R:G -> '0'2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 8 {'0'2495R:U -> '0'2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 9 {'0'2527R:U -> '0'2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 10 {'0'2496R:C -> '0'2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2524R:G -> '0'2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2524R:G -> '0'2525R:G: adjacent_5p upward } 0 13 {'0'2525R:G -> '0'2524R:G: adjacent_3p downward } 0 14 {'0'2525R:G -> '0'2526R:C: adjacent_5p } 0 15 {'0'2526R:C -> '0'2525R:G: adjacent_3p } 0 16 {'0'2525R:G -> '0'2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {'0'2527R:U -> '0'2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 18 {'0'2526R:C -> '0'2527R:U: adjacent_5p } 0 19 {'0'2527R:U -> '0'2526R:C: adjacent_3p } 0 20 {'0'2527R:U -> '0'2528R:U: adjacent_5p upward } 0 21 {'0'2528R:U -> '0'2527R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 16 . 5 . . . . 15 . 18 . 6 . 9 . . 17 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2495R:U 0 1 '0'2496R:C 0 2 '0'2497R:A 0 3 '0'2523R:U 0 4 '0'2524R:G 0 5 '0'2525R:G 0 6 '0'2526R:C 0 7 '0'2527R:U 0 [Edges] 0 {'0'2495R:U -> '0'2496R:C: adjacent_5p upward } 0 1 {'0'2496R:C -> '0'2495R:U: adjacent_3p downward } 0 2 {'0'2495R:U -> '0'2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {'0'2525R:G -> '0'2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {'0'2495R:U -> '0'2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 5 {'0'2527R:U -> '0'2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 6 {'0'2496R:C -> '0'2497R:A: adjacent_5p upward } 0 7 {'0'2497R:A -> '0'2496R:C: adjacent_3p downward } 0 8 {'0'2496R:C -> '0'2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2524R:G -> '0'2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2497R:A -> '0'2523R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2523R:U -> '0'2497R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2497R:A -> '0'2524R:G: outward } 0 13 {'0'2524R:G -> '0'2497R:A: outward } 0 14 {'0'2523R:U -> '0'2524R:G: adjacent_5p } 0 15 {'0'2524R:G -> '0'2523R:U: adjacent_3p } 0 16 {'0'2524R:G -> '0'2525R:G: adjacent_5p upward } 0 17 {'0'2525R:G -> '0'2524R:G: adjacent_3p downward } 0 18 {'0'2525R:G -> '0'2526R:C: adjacent_5p } 0 19 {'0'2526R:C -> '0'2525R:G: adjacent_3p } 0 20 {'0'2525R:G -> '0'2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 21 {'0'2527R:U -> '0'2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 22 {'0'2526R:C -> '0'2527R:U: adjacent_5p } 0 23 {'0'2527R:U -> '0'2526R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 9 13 15 . 16 . . 5 3 . . . 17 . 18 20 6 . . . . . 19 . 22 7 5 . . . . 21 23 . [GraphModel] [Vertices] 0 '0'2544R:G 0 1 '0'2545R:U 0 2 '0'2546R:U 0 3 '0'2610R:U 0 4 '0'2611R:G 0 5 '0'2612R:A 0 6 '0'2613R:G 0 7 '0'2614R:C 0 [Edges] 0 {'0'2544R:G -> '0'2545R:U: adjacent_5p upward } 0 1 {'0'2545R:U -> '0'2544R:G: adjacent_3p downward } 0 2 {'0'2544R:G -> '0'2614R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2614R:C -> '0'2544R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2545R:U -> '0'2546R:U: adjacent_5p upward } 0 5 {'0'2546R:U -> '0'2545R:U: adjacent_3p downward } 0 6 {'0'2545R:U -> '0'2613R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'2613R:G -> '0'2545R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'2546R:U -> '0'2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 9 {'0'2610R:U -> '0'2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 10 {'0'2610R:U -> '0'2611R:G: adjacent_5p } 0 11 {'0'2611R:G -> '0'2610R:U: adjacent_3p } 0 12 {'0'2611R:G -> '0'2612R:A: adjacent_5p } 0 13 {'0'2612R:A -> '0'2611R:G: adjacent_3p } 0 14 {'0'2612R:A -> '0'2613R:G: adjacent_5p } 0 15 {'0'2613R:G -> '0'2612R:A: adjacent_3p } 0 16 {'0'2613R:G -> '0'2614R:C: adjacent_5p upward } 0 17 {'0'2614R:C -> '0'2613R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'2545R:U 0 1 '0'2546R:U 0 2 '0'2547R:C 0 3 '0'2609R:G 0 4 '0'2610R:U 0 5 '0'2611R:G 0 6 '0'2612R:A 0 7 '0'2613R:G 0 [Edges] 0 {'0'2545R:U -> '0'2546R:U: adjacent_5p upward } 0 1 {'0'2546R:U -> '0'2545R:U: adjacent_3p downward } 0 2 {'0'2545R:U -> '0'2613R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2613R:G -> '0'2545R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2546R:U -> '0'2547R:C: adjacent_5p upward } 0 5 {'0'2547R:C -> '0'2546R:U: adjacent_3p downward } 0 6 {'0'2546R:U -> '0'2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {'0'2610R:U -> '0'2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {'0'2547R:C -> '0'2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2609R:G -> '0'2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2609R:G -> '0'2610R:U: adjacent_5p upward } 0 11 {'0'2610R:U -> '0'2609R:G: adjacent_3p downward } 0 12 {'0'2610R:U -> '0'2611R:G: adjacent_5p } 0 13 {'0'2611R:G -> '0'2610R:U: adjacent_3p } 0 14 {'0'2611R:G -> '0'2612R:A: adjacent_5p } 0 15 {'0'2612R:A -> '0'2611R:G: adjacent_3p } 0 16 {'0'2612R:A -> '0'2613R:G: adjacent_5p } 0 17 {'0'2613R:G -> '0'2612R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'2546R:U 0 1 '0'2547R:C 0 2 '0'2548R:C 0 3 '0'2606R:G 0 4 '0'2607R:U 0 5 '0'2608R:C 0 6 '0'2609R:G 0 7 '0'2610R:U 0 [Edges] 0 {'0'2546R:U -> '0'2547R:C: adjacent_5p upward } 0 1 {'0'2547R:C -> '0'2546R:U: adjacent_3p downward } 0 2 {'0'2546R:U -> '0'2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {'0'2610R:U -> '0'2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {'0'2547R:C -> '0'2548R:C: adjacent_5p } 0 5 {'0'2548R:C -> '0'2547R:C: adjacent_3p } 0 6 {'0'2547R:C -> '0'2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2609R:G -> '0'2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2548R:C -> '0'2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2606R:G -> '0'2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2606R:G -> '0'2607R:U: adjacent_5p } 0 11 {'0'2607R:U -> '0'2606R:G: adjacent_3p } 0 12 {'0'2606R:G -> '0'2609R:G: upward } 0 13 {'0'2609R:G -> '0'2606R:G: downward } 0 14 {'0'2607R:U -> '0'2608R:C: adjacent_5p } 0 15 {'0'2608R:C -> '0'2607R:U: adjacent_3p } 0 16 {'0'2608R:C -> '0'2609R:G: adjacent_5p } 0 17 {'0'2609R:G -> '0'2608R:C: adjacent_3p } 0 18 {'0'2609R:G -> '0'2610R:U: adjacent_5p upward } 0 19 {'0'2610R:U -> '0'2609R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2547R:C 0 1 '0'2548R:C 0 2 '0'2549R:C 0 3 '0'2605R:G 0 4 '0'2606R:G 0 5 '0'2607R:U 0 6 '0'2608R:C 0 7 '0'2609R:G 0 [Edges] 0 {'0'2547R:C -> '0'2548R:C: adjacent_5p } 0 1 {'0'2548R:C -> '0'2547R:C: adjacent_3p } 0 2 {'0'2547R:C -> '0'2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2609R:G -> '0'2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2548R:C -> '0'2549R:C: adjacent_5p } 0 5 {'0'2549R:C -> '0'2548R:C: adjacent_3p } 0 6 {'0'2548R:C -> '0'2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2606R:G -> '0'2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2549R:C -> '0'2605R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2605R:G -> '0'2549R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2605R:G -> '0'2606R:G: adjacent_5p upward } 0 11 {'0'2606R:G -> '0'2605R:G: adjacent_3p downward } 0 12 {'0'2606R:G -> '0'2607R:U: adjacent_5p } 0 13 {'0'2607R:U -> '0'2606R:G: adjacent_3p } 0 14 {'0'2606R:G -> '0'2609R:G: upward } 0 15 {'0'2609R:G -> '0'2606R:G: downward } 0 16 {'0'2607R:U -> '0'2608R:C: adjacent_5p } 0 17 {'0'2608R:C -> '0'2607R:U: adjacent_3p } 0 18 {'0'2608R:C -> '0'2609R:G: adjacent_5p } 0 19 {'0'2609R:G -> '0'2608R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . 14 5 . . . . 13 . 16 . 6 . . . . . 17 . 18 7 3 . . . 15 . 19 . [GraphModel] [Vertices] 0 '0'2556R:C 0 1 '0'2557R:U 0 2 '0'2558R:G 0 3 '0'2575R:C 0 4 '0'2576R:A 0 5 '0'2577R:A 0 6 '0'2578R:G 0 7 '0'2579R:G 0 [Edges] 0 {'0'2556R:C -> '0'2557R:U: adjacent_5p upward } 0 1 {'0'2557R:U -> '0'2556R:C: adjacent_3p downward } 0 2 {'0'2556R:C -> '0'2579R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2579R:G -> '0'2556R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2557R:U -> '0'2558R:G: adjacent_5p } 0 5 {'0'2558R:G -> '0'2557R:U: adjacent_3p } 0 6 {'0'2557R:U -> '0'2578R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'2578R:G -> '0'2557R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'2558R:G -> '0'2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2575R:C -> '0'2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2575R:C -> '0'2576R:A: adjacent_5p upward } 0 11 {'0'2576R:A -> '0'2575R:C: adjacent_3p downward } 0 12 {'0'2576R:A -> '0'2577R:A: adjacent_5p } 0 13 {'0'2577R:A -> '0'2576R:A: adjacent_3p } 0 14 {'0'2577R:A -> '0'2578R:G: adjacent_5p } 0 15 {'0'2578R:G -> '0'2577R:A: adjacent_3p } 0 16 {'0'2578R:G -> '0'2579R:G: adjacent_5p upward } 0 17 {'0'2579R:G -> '0'2578R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'2557R:U 0 1 '0'2558R:G 0 2 '0'2559R:C 0 3 '0'2574R:G 0 4 '0'2575R:C 0 5 '0'2576R:A 0 6 '0'2577R:A 0 7 '0'2578R:G 0 [Edges] 0 {'0'2557R:U -> '0'2558R:G: adjacent_5p } 0 1 {'0'2558R:G -> '0'2557R:U: adjacent_3p } 0 2 {'0'2557R:U -> '0'2578R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2578R:G -> '0'2557R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2558R:G -> '0'2559R:C: adjacent_5p upward } 0 5 {'0'2559R:C -> '0'2558R:G: adjacent_3p downward } 0 6 {'0'2558R:G -> '0'2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2575R:C -> '0'2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2559R:C -> '0'2574R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2574R:G -> '0'2559R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2574R:G -> '0'2575R:C: adjacent_5p upward } 0 11 {'0'2575R:C -> '0'2574R:G: adjacent_3p downward } 0 12 {'0'2575R:C -> '0'2576R:A: adjacent_5p upward } 0 13 {'0'2576R:A -> '0'2575R:C: adjacent_3p downward } 0 14 {'0'2576R:A -> '0'2577R:A: adjacent_5p } 0 15 {'0'2577R:A -> '0'2576R:A: adjacent_3p } 0 16 {'0'2577R:A -> '0'2578R:G: adjacent_5p } 0 17 {'0'2578R:G -> '0'2577R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'2580R:G 0 1 '0'2581R:U 0 2 '0'2582R:G 0 3 '0'2596R:A 0 4 '0'2597R:U 0 5 '0'2598R:U 0 6 '0'2599R:A 0 7 '0'2600R:A 0 [Edges] 0 {'0'2580R:G -> '0'2581R:U: adjacent_5p upward } 0 1 {'0'2581R:U -> '0'2580R:G: adjacent_3p downward } 0 2 {'0'2580R:G -> '0'2600R:A: pairing parallel trans 57 Ss/Ss } 0 3 {'0'2600R:A -> '0'2580R:G: pairing parallel trans 57 Ss/Ss } 0 4 {'0'2581R:U -> '0'2582R:G: adjacent_5p } 0 5 {'0'2582R:G -> '0'2581R:U: adjacent_3p } 0 6 {'0'2582R:G -> '0'2596R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {'0'2596R:A -> '0'2582R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {'0'2596R:A -> '0'2597R:U: adjacent_5p upward } 0 9 {'0'2597R:U -> '0'2596R:A: adjacent_3p downward } 0 10 {'0'2597R:U -> '0'2598R:U: adjacent_5p upward } 0 11 {'0'2598R:U -> '0'2597R:U: adjacent_3p downward } 0 12 {'0'2598R:U -> '0'2599R:A: adjacent_5p } 0 13 {'0'2599R:A -> '0'2598R:U: adjacent_3p } 0 14 {'0'2599R:A -> '0'2600R:A: adjacent_5p upward } 0 15 {'0'2600R:A -> '0'2599R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 '0'2672R:C 0 1 '0'2673R:U 0 2 '0'2674R:G 0 3 '0'2813R:A 0 4 '0'2814R:A 0 5 '0'2815R:G 0 6 '0'2816R:A 0 7 '0'2817R:G 0 [Edges] 0 {'0'2672R:C -> '0'2673R:U: adjacent_5p upward } 0 1 {'0'2673R:U -> '0'2672R:C: adjacent_3p downward } 0 2 {'0'2672R:C -> '0'2817R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2817R:G -> '0'2672R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2673R:U -> '0'2674R:G: adjacent_5p upward } 0 5 {'0'2674R:G -> '0'2673R:U: adjacent_3p downward } 0 6 {'0'2674R:G -> '0'2813R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {'0'2813R:A -> '0'2674R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {'0'2813R:A -> '0'2814R:A: adjacent_5p } 0 9 {'0'2814R:A -> '0'2813R:A: adjacent_3p } 0 10 {'0'2814R:A -> '0'2815R:G: adjacent_5p } 0 11 {'0'2815R:G -> '0'2814R:A: adjacent_3p } 0 12 {'0'2814R:A -> '0'2816R:A: outward } 0 13 {'0'2816R:A -> '0'2814R:A: outward } 0 14 {'0'2815R:G -> '0'2816R:A: adjacent_5p } 0 15 {'0'2816R:A -> '0'2815R:G: adjacent_3p } 0 16 {'0'2816R:A -> '0'2817R:G: adjacent_5p } 0 17 {'0'2817R:G -> '0'2816R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 12 . 5 . . . . 11 . 14 . 6 . . . . 13 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'2674R:G 0 1 '0'2675R:A 0 2 '0'2676R:C 0 3 '0'2809R:G 0 4 '0'2810R:G 0 5 '0'2811R:A 0 6 '0'2812R:A 0 7 '0'2813R:A 0 [Edges] 0 {'0'2674R:G -> '0'2675R:A: adjacent_5p } 0 1 {'0'2675R:A -> '0'2674R:G: adjacent_3p } 0 2 {'0'2674R:G -> '0'2810R:G: inward } 0 3 {'0'2810R:G -> '0'2674R:G: inward } 0 4 {'0'2674R:G -> '0'2813R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2813R:A -> '0'2674R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2675R:A -> '0'2676R:C: adjacent_5p upward } 0 7 {'0'2676R:C -> '0'2675R:A: adjacent_3p downward } 0 8 {'0'2675R:A -> '0'2810R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'2810R:G -> '0'2675R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'2675R:A -> '0'2813R:A: outward } 0 11 {'0'2813R:A -> '0'2675R:A: outward } 0 12 {'0'2676R:C -> '0'2809R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2809R:G -> '0'2676R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2809R:G -> '0'2810R:G: adjacent_5p upward } 0 15 {'0'2810R:G -> '0'2809R:G: adjacent_3p downward } 0 16 {'0'2810R:G -> '0'2811R:A: adjacent_5p } 0 17 {'0'2811R:A -> '0'2810R:G: adjacent_3p } 0 18 {'0'2811R:A -> '0'2812R:A: adjacent_5p } 0 19 {'0'2812R:A -> '0'2811R:A: adjacent_3p } 0 20 {'0'2811R:A -> '0'2813R:A: downward } 0 21 {'0'2813R:A -> '0'2811R:A: upward } 0 22 {'0'2812R:A -> '0'2813R:A: adjacent_5p } 0 23 {'0'2813R:A -> '0'2812R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . 2 . . 4 1 1 . 6 . 8 . . 10 2 . 7 . 12 . . . . 3 . . 13 . 14 . . . 4 3 9 . 15 . 16 . . 5 . . . . 17 . 18 20 6 . . . . . 19 . 22 7 5 11 . . . 21 23 . [GraphModel] [Vertices] 0 '0'2710R:U 0 1 '0'2711R:U 0 2 '0'2712R:G 0 3 '0'2680R:A 0 4 '0'2681R:A 0 5 '0'2682R:C 0 6 '0'2683R:G 0 7 '0'2684R:A 0 [Edges] 0 {'0'2680R:A -> '0'2681R:A: adjacent_5p upward } 0 1 {'0'2681R:A -> '0'2680R:A: adjacent_3p downward } 0 2 {'0'2680R:A -> '0'2712R:G: pairing parallel trans one_hbond Ww/Sw } 0 3 {'0'2712R:G -> '0'2680R:A: pairing parallel trans one_hbond Sw/Ww } 0 4 {'0'2681R:A -> '0'2682R:C: adjacent_5p } 0 5 {'0'2682R:C -> '0'2681R:A: adjacent_3p } 0 6 {'0'2682R:C -> '0'2683R:G: adjacent_5p } 0 7 {'0'2683R:G -> '0'2682R:C: adjacent_3p } 0 8 {'0'2682R:C -> '0'2712R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2712R:G -> '0'2682R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2683R:G -> '0'2684R:A: adjacent_5p upward } 0 11 {'0'2684R:A -> '0'2683R:G: adjacent_3p downward } 0 12 {'0'2683R:G -> '0'2711R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'2711R:U -> '0'2683R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'2683R:G -> '0'2712R:G: outward } 0 15 {'0'2712R:G -> '0'2683R:G: outward } 0 16 {'0'2684R:A -> '0'2710R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'2710R:U -> '0'2684R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'2710R:U -> '0'2711R:U: adjacent_5p upward } 0 19 {'0'2711R:U -> '0'2710R:U: adjacent_3p downward } 0 20 {'0'2711R:U -> '0'2712R:G: adjacent_5p upward } 0 21 {'0'2712R:G -> '0'2711R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . . . 13 . 2 . 21 . 3 . 9 15 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . 8 . 5 . 6 . 6 . 12 14 . . 7 . 10 7 16 . . . . . 11 . [GraphModel] [Vertices] 0 '0'2761R:A 0 1 '0'2762R:C 0 2 '0'2763R:G 0 3 '0'2717R:C 0 4 '0'2718R:C 0 5 '0'2719R:A 0 6 '0'2720R:C 0 7 '0'2721R:U 0 [Edges] 0 {'0'2717R:C -> '0'2718R:C: adjacent_5p } 0 1 {'0'2718R:C -> '0'2717R:C: adjacent_3p } 0 2 {'0'2717R:C -> '0'2763R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2763R:G -> '0'2717R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2718R:C -> '0'2719R:A: adjacent_5p } 0 5 {'0'2719R:A -> '0'2718R:C: adjacent_3p } 0 6 {'0'2718R:C -> '0'2720R:C: pairing parallel cis one_hbond 134 Bs/Hw } 0 7 {'0'2720R:C -> '0'2718R:C: pairing parallel cis one_hbond 134 Hw/Bs } 0 8 {'0'2718R:C -> '0'2761R:A: pairing antiparallel trans XXV Ww/Hw } 0 9 {'0'2761R:A -> '0'2718R:C: pairing antiparallel trans XXV Hw/Ww } 0 10 {'0'2719R:A -> '0'2720R:C: adjacent_5p upward } 0 11 {'0'2720R:C -> '0'2719R:A: adjacent_3p downward } 0 12 {'0'2720R:C -> '0'2721R:U: adjacent_5p upward } 0 13 {'0'2721R:U -> '0'2720R:C: adjacent_3p downward } 0 14 {'0'2720R:C -> '0'2763R:G: pairing antiparallel cis one_hbond 120 Wh/Ss } 0 15 {'0'2763R:G -> '0'2720R:C: pairing antiparallel cis one_hbond 120 Ss/Wh } 0 16 {'0'2721R:U -> '0'2761R:A: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'2761R:A -> '0'2721R:U: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'2761R:A -> '0'2762R:C: adjacent_5p } 0 19 {'0'2762R:C -> '0'2761R:A: adjacent_3p } 0 20 {'0'2761R:A -> '0'2763R:G: upward } 0 21 {'0'2763R:G -> '0'2761R:A: downward } 0 22 {'0'2762R:C -> '0'2763R:G: adjacent_5p } 0 23 {'0'2763R:G -> '0'2762R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 20 . 9 . . 17 1 19 . 22 . . . . . 2 21 23 . 3 . . 15 . 3 . . 2 . 0 . . . 4 8 . . 1 . 4 6 . 5 . . . . 5 . 10 . 6 . . 14 . 7 11 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 '0'2779R:G 0 1 '0'2780R:C 0 2 '0'2781R:U 0 3 '0'2791R:U 0 4 '0'2792R:A 0 5 '0'2793R:A 0 6 '0'2794R:G 0 7 '0'2795R:C 0 [Edges] 0 {'0'2779R:G -> '0'2780R:C: adjacent_5p upward } 0 1 {'0'2780R:C -> '0'2779R:G: adjacent_3p downward } 0 2 {'0'2779R:G -> '0'2795R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2795R:C -> '0'2779R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2780R:C -> '0'2781R:U: adjacent_5p upward } 0 5 {'0'2781R:U -> '0'2780R:C: adjacent_3p downward } 0 6 {'0'2780R:C -> '0'2794R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2794R:G -> '0'2780R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2781R:U -> '0'2791R:U: pairing antiparallel trans 81 Ww/Hh } 0 9 {'0'2791R:U -> '0'2781R:U: pairing antiparallel trans 81 Hh/Ww } 0 10 {'0'2781R:U -> '0'2793R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 11 {'0'2793R:A -> '0'2781R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 12 {'0'2791R:U -> '0'2792R:A: adjacent_5p } 0 13 {'0'2792R:A -> '0'2791R:U: adjacent_3p } 0 14 {'0'2791R:U -> '0'2793R:A: pairing parallel cis XXIII Ww/Hh } 0 15 {'0'2793R:A -> '0'2791R:U: pairing parallel cis XXIII Hh/Ww } 0 16 {'0'2792R:A -> '0'2793R:A: adjacent_5p upward } 0 17 {'0'2793R:A -> '0'2792R:A: adjacent_3p downward } 0 18 {'0'2793R:A -> '0'2794R:G: adjacent_5p upward } 0 19 {'0'2794R:G -> '0'2793R:A: adjacent_3p downward } 0 20 {'0'2794R:G -> '0'2795R:C: adjacent_5p upward } 0 21 {'0'2795R:C -> '0'2794R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2781R:U 0 1 '0'2782R:G 0 2 '0'2783R:A 0 3 '0'2789R:U 0 4 '0'2790R:C 0 5 '0'2791R:U 0 6 '0'2792R:A 0 7 '0'2793R:A 0 [Edges] 0 {'0'2781R:U -> '0'2782R:G: adjacent_5p upward } 0 1 {'0'2782R:G -> '0'2781R:U: adjacent_3p downward } 0 2 {'0'2781R:U -> '0'2791R:U: pairing antiparallel trans 81 Ww/Hh } 0 3 {'0'2791R:U -> '0'2781R:U: pairing antiparallel trans 81 Hh/Ww } 0 4 {'0'2781R:U -> '0'2793R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 5 {'0'2793R:A -> '0'2781R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 6 {'0'2782R:G -> '0'2783R:A: adjacent_5p } 0 7 {'0'2783R:A -> '0'2782R:G: adjacent_3p } 0 8 {'0'2782R:G -> '0'2789R:U: inward } 0 9 {'0'2789R:U -> '0'2782R:G: inward } 0 10 {'0'2782R:G -> '0'2792R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'2792R:A -> '0'2782R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'2783R:A -> '0'2789R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {'0'2789R:U -> '0'2783R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {'0'2783R:A -> '0'2792R:A: outward } 0 15 {'0'2792R:A -> '0'2783R:A: outward } 0 16 {'0'2789R:U -> '0'2790R:C: adjacent_5p } 0 17 {'0'2790R:C -> '0'2789R:U: adjacent_3p } 0 18 {'0'2790R:C -> '0'2791R:U: adjacent_5p } 0 19 {'0'2791R:U -> '0'2790R:C: adjacent_3p } 0 20 {'0'2791R:U -> '0'2792R:A: adjacent_5p } 0 21 {'0'2792R:A -> '0'2791R:U: adjacent_3p } 0 22 {'0'2791R:U -> '0'2793R:A: pairing parallel cis XXIII Ww/Hh } 0 23 {'0'2793R:A -> '0'2791R:U: pairing parallel cis XXIII Hh/Ww } 0 24 {'0'2792R:A -> '0'2793R:A: adjacent_5p upward } 0 25 {'0'2793R:A -> '0'2792R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 8 . . 10 . 2 . 7 . 12 . . 14 . 3 . 9 13 . 16 . . . 4 . . . 17 . 18 . . 5 3 . . . 19 . 20 22 6 . 11 15 . . 21 . 24 7 5 . . . . 23 25 . [GraphModel] [Vertices] 0 '0'2782R:G 0 1 '0'2783R:A 0 2 '0'2784R:A 0 3 '0'2788R:A 0 4 '0'2789R:U 0 5 '0'2790R:C 0 6 '0'2791R:U 0 7 '0'2792R:A 0 [Edges] 0 {'0'2782R:G -> '0'2783R:A: adjacent_5p } 0 1 {'0'2783R:A -> '0'2782R:G: adjacent_3p } 0 2 {'0'2782R:G -> '0'2789R:U: inward } 0 3 {'0'2789R:U -> '0'2782R:G: inward } 0 4 {'0'2782R:G -> '0'2792R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2792R:A -> '0'2782R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2783R:A -> '0'2784R:A: adjacent_5p upward } 0 7 {'0'2784R:A -> '0'2783R:A: adjacent_3p downward } 0 8 {'0'2783R:A -> '0'2789R:U: pairing antiparallel trans XXIV Hh/Ws } 0 9 {'0'2789R:U -> '0'2783R:A: pairing antiparallel trans XXIV Ws/Hh } 0 10 {'0'2783R:A -> '0'2792R:A: outward } 0 11 {'0'2792R:A -> '0'2783R:A: outward } 0 12 {'0'2784R:A -> '0'2788R:A: pairing antiparallel trans V Hh/Ww } 0 13 {'0'2788R:A -> '0'2784R:A: pairing antiparallel trans V Ww/Hh } 0 14 {'0'2788R:A -> '0'2789R:U: adjacent_5p upward } 0 15 {'0'2789R:U -> '0'2788R:A: adjacent_3p downward } 0 16 {'0'2789R:U -> '0'2790R:C: adjacent_5p } 0 17 {'0'2790R:C -> '0'2789R:U: adjacent_3p } 0 18 {'0'2790R:C -> '0'2791R:U: adjacent_5p } 0 19 {'0'2791R:U -> '0'2790R:C: adjacent_3p } 0 20 {'0'2791R:U -> '0'2792R:A: adjacent_5p } 0 21 {'0'2792R:A -> '0'2791R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . 2 . . 4 1 1 . 6 . 8 . . 10 2 . 7 . 12 . . . . 3 . . 13 . 14 . . . 4 3 9 . 15 . 16 . . 5 . . . . 17 . 18 . 6 . . . . . 19 . 20 7 5 11 . . . . 21 . [GraphModel] [Vertices] 0 '0'2901R:C 0 1 '0'2902R:A 0 2 '0'2903R:C 0 3 '0'2852R:A 0 4 '0'2853R:U 0 5 '0'2854R:A 0 6 '0'2855R:G 0 7 '0'2856R:A 0 [Edges] 0 {'0'2852R:A -> '0'2853R:U: adjacent_5p } 0 1 {'0'2853R:U -> '0'2852R:A: adjacent_3p } 0 2 {'0'2852R:A -> '0'2901R:C: inward } 0 3 {'0'2901R:C -> '0'2852R:A: inward } 0 4 {'0'2852R:A -> '0'2902R:A: downward } 0 5 {'0'2902R:A -> '0'2852R:A: upward } 0 6 {'0'2852R:A -> '0'2903R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 7 {'0'2903R:C -> '0'2852R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 8 {'0'2853R:U -> '0'2854R:A: adjacent_5p upward } 0 9 {'0'2854R:A -> '0'2853R:U: adjacent_3p downward } 0 10 {'0'2854R:A -> '0'2855R:G: adjacent_5p upward } 0 11 {'0'2855R:G -> '0'2854R:A: adjacent_3p downward } 0 12 {'0'2855R:G -> '0'2856R:A: adjacent_5p upward } 0 13 {'0'2856R:A -> '0'2855R:G: adjacent_3p downward } 0 14 {'0'2855R:G -> '0'2903R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2903R:C -> '0'2855R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2856R:A -> '0'2901R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 17 {'0'2901R:C -> '0'2856R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 18 {'0'2901R:C -> '0'2902R:A: adjacent_5p } 0 19 {'0'2902R:A -> '0'2901R:C: adjacent_3p } 0 20 {'0'2902R:A -> '0'2903R:C: adjacent_5p } 0 21 {'0'2903R:C -> '0'2902R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . 3 . . . 17 1 19 . 20 5 . . . . 2 . 21 . 7 . . 15 . 3 2 4 6 . 0 . . . 4 . . . 1 . 8 . . 5 . . . . 9 . 10 . 6 . . 14 . . 11 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 '9'3028R:U 0 1 '9'3029R:C 0 2 '9'3030R:C 0 3 '9'3050R:G 0 4 '9'3051R:A 0 5 '9'3052R:A 0 6 '9'3053R:G 0 7 '9'3054R:A 0 [Edges] 0 {'9'3028R:U -> '9'3029R:C: adjacent_5p upward } 0 1 {'9'3029R:C -> '9'3028R:U: adjacent_3p downward } 0 2 {'9'3028R:U -> '9'3054R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'9'3054R:A -> '9'3028R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'9'3029R:C -> '9'3030R:C: adjacent_5p upward } 0 5 {'9'3030R:C -> '9'3029R:C: adjacent_3p downward } 0 6 {'9'3029R:C -> '9'3053R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3053R:G -> '9'3029R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 11 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 12 {'9'3050R:G -> '9'3051R:A: adjacent_5p upward } 0 13 {'9'3051R:A -> '9'3050R:G: adjacent_3p downward } 0 14 {'9'3051R:A -> '9'3052R:A: adjacent_5p } 0 15 {'9'3052R:A -> '9'3051R:A: adjacent_3p } 0 16 {'9'3052R:A -> '9'3053R:G: adjacent_5p upward } 0 17 {'9'3053R:G -> '9'3052R:A: adjacent_3p downward } 0 18 {'9'3053R:G -> '9'3054R:A: adjacent_5p upward } 0 19 {'9'3054R:A -> '9'3053R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '9'3029R:C 0 1 '9'3030R:C 0 2 '9'3031R:C 0 3 '9'3049R:G 0 4 '9'3050R:G 0 5 '9'3051R:A 0 6 '9'3052R:A 0 7 '9'3053R:G 0 [Edges] 0 {'9'3029R:C -> '9'3030R:C: adjacent_5p upward } 0 1 {'9'3030R:C -> '9'3029R:C: adjacent_3p downward } 0 2 {'9'3029R:C -> '9'3053R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3053R:G -> '9'3029R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3030R:C -> '9'3031R:C: adjacent_5p } 0 5 {'9'3031R:C -> '9'3030R:C: adjacent_3p } 0 6 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 9 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 10 {'9'3031R:C -> '9'3049R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3049R:G -> '9'3031R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3049R:G -> '9'3050R:G: adjacent_5p upward } 0 13 {'9'3050R:G -> '9'3049R:G: adjacent_3p downward } 0 14 {'9'3050R:G -> '9'3051R:A: adjacent_5p upward } 0 15 {'9'3051R:A -> '9'3050R:G: adjacent_3p downward } 0 16 {'9'3051R:A -> '9'3052R:A: adjacent_5p } 0 17 {'9'3052R:A -> '9'3051R:A: adjacent_3p } 0 18 {'9'3052R:A -> '9'3053R:G: adjacent_5p upward } 0 19 {'9'3053R:G -> '9'3052R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . 7 . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 9 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '9'3030R:C 0 1 '9'3031R:C 0 2 '9'3032R:G 0 3 '9'3048R:C 0 4 '9'3049R:G 0 5 '9'3050R:G 0 6 '9'3051R:A 0 7 '9'3052R:A 0 [Edges] 0 {'9'3030R:C -> '9'3031R:C: adjacent_5p } 0 1 {'9'3031R:C -> '9'3030R:C: adjacent_3p } 0 2 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 5 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 6 {'9'3031R:C -> '9'3032R:G: adjacent_5p upward } 0 7 {'9'3032R:G -> '9'3031R:C: adjacent_3p downward } 0 8 {'9'3031R:C -> '9'3049R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'9'3049R:G -> '9'3031R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'9'3032R:G -> '9'3048R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3048R:C -> '9'3032R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3032R:G -> '9'3049R:G: outward } 0 13 {'9'3049R:G -> '9'3032R:G: outward } 0 14 {'9'3048R:C -> '9'3049R:G: adjacent_5p upward } 0 15 {'9'3049R:G -> '9'3048R:C: adjacent_3p downward } 0 16 {'9'3049R:G -> '9'3050R:G: adjacent_5p upward } 0 17 {'9'3050R:G -> '9'3049R:G: adjacent_3p downward } 0 18 {'9'3050R:G -> '9'3051R:A: adjacent_5p upward } 0 19 {'9'3051R:A -> '9'3050R:G: adjacent_3p downward } 0 20 {'9'3051R:A -> '9'3052R:A: adjacent_5p } 0 21 {'9'3052R:A -> '9'3051R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 9 13 15 . 16 . . 5 3 . . . 17 . 18 . 6 . . . . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3066R:G 0 1 '9'3067R:C 0 2 '9'3068R:G 0 3 '9'3011R:A 0 4 '9'3012R:C 0 5 '9'3013R:A 0 6 '9'3014R:G 0 7 '9'3015R:C 0 [Edges] 0 {'9'3011R:A -> '9'3012R:C: adjacent_5p } 0 1 {'9'3012R:C -> '9'3011R:A: adjacent_3p } 0 2 {'9'3011R:A -> '9'3068R:G: pairing parallel trans 57 Ss/Ss } 0 3 {'9'3068R:G -> '9'3011R:A: pairing parallel trans 57 Ss/Ss } 0 4 {'9'3012R:C -> '9'3013R:A: adjacent_5p } 0 5 {'9'3013R:A -> '9'3012R:C: adjacent_3p } 0 6 {'9'3013R:A -> '9'3014R:G: adjacent_5p } 0 7 {'9'3014R:G -> '9'3013R:A: adjacent_3p } 0 8 {'9'3014R:G -> '9'3015R:C: adjacent_5p upward } 0 9 {'9'3015R:C -> '9'3014R:G: adjacent_3p downward } 0 10 {'9'3014R:G -> '9'3067R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3067R:C -> '9'3014R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3014R:G -> '9'3068R:G: outward } 0 13 {'9'3068R:G -> '9'3014R:G: outward } 0 14 {'9'3015R:C -> '9'3066R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3066R:G -> '9'3015R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3066R:G -> '9'3067R:C: adjacent_5p upward } 0 17 {'9'3067R:C -> '9'3066R:G: adjacent_3p downward } 0 18 {'9'3067R:C -> '9'3068R:G: adjacent_5p upward } 0 19 {'9'3068R:G -> '9'3067R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 11 . 2 . 19 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 . . . . . 9 . [GraphModel] [Vertices] 0 '9'3111R:U 0 1 '9'3112R:U 0 2 '9'3113R:C 0 3 '9'3066R:G 0 4 '9'3067R:C 0 5 '9'3068R:G 0 6 '9'3069R:U 0 7 '9'3070R:U 0 [Edges] 0 {'9'3066R:G -> '9'3067R:C: adjacent_5p upward } 0 1 {'9'3067R:C -> '9'3066R:G: adjacent_3p downward } 0 2 {'9'3066R:G -> '9'3113R:C: pairing antiparallel trans one_hbond 122 Hw/Wh } 0 3 {'9'3113R:C -> '9'3066R:G: pairing antiparallel trans one_hbond 122 Wh/Hw } 0 4 {'9'3067R:C -> '9'3068R:G: adjacent_5p upward } 0 5 {'9'3068R:G -> '9'3067R:C: adjacent_3p downward } 0 6 {'9'3068R:G -> '9'3069R:U: adjacent_5p upward } 0 7 {'9'3069R:U -> '9'3068R:G: adjacent_3p downward } 0 8 {'9'3069R:U -> '9'3070R:U: adjacent_5p } 0 9 {'9'3070R:U -> '9'3069R:U: adjacent_3p } 0 10 {'9'3069R:U -> '9'3112R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {'9'3112R:U -> '9'3069R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {'9'3070R:U -> '9'3111R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {'9'3111R:U -> '9'3070R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {'9'3111R:U -> '9'3112R:U: adjacent_5p upward } 0 15 {'9'3112R:U -> '9'3111R:U: adjacent_3p downward } 0 16 {'9'3112R:U -> '9'3113R:C: adjacent_5p } 0 17 {'9'3113R:C -> '9'3112R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:G 0 2 A20R:C 0 3 A28R:G 0 4 A29R:A 0 5 A30R:U 0 6 A31R:C 0 7 A32R:G 0 [Edges] 0 {A18R:C -> A19R:G: adjacent_5p upward } 0 1 {A19R:G -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:G -> A20R:C: adjacent_5p pairing antiparallel cis one_hbond Sw/Ss } 0 5 {A20R:C -> A19R:G: adjacent_3p pairing antiparallel cis one_hbond Ss/Sw } 0 6 {A19R:G -> A29R:A: upward } 0 7 {A29R:A -> A19R:G: downward } 0 8 {A19R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A31R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A20R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A28R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A28R:G -> A29R:A: adjacent_5p } 0 13 {A29R:A -> A28R:G: adjacent_3p } 0 14 {A28R:G -> A31R:C: pairing antiparallel cis one_hbond Sw/Ss } 0 15 {A31R:C -> A28R:G: pairing antiparallel cis one_hbond Ss/Sw } 0 16 {A29R:A -> A30R:U: adjacent_5p } 0 17 {A30R:U -> A29R:A: adjacent_3p } 0 18 {A30R:U -> A31R:C: adjacent_5p } 0 19 {A31R:C -> A30R:U: adjacent_3p } 0 20 {A31R:C -> A32R:G: adjacent_5p upward } 0 21 {A32R:G -> A31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . 7 . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 9 . 15 . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:C 0 2 A21R:G 0 3 A27R:C 0 4 A28R:G 0 5 A29R:A 0 6 A30R:U 0 7 A31R:C 0 [Edges] 0 {A19R:G -> A20R:C: adjacent_5p pairing antiparallel cis one_hbond Sw/Ss } 0 1 {A20R:C -> A19R:G: adjacent_3p pairing antiparallel cis one_hbond Ss/Sw } 0 2 {A19R:G -> A29R:A: upward } 0 3 {A29R:A -> A19R:G: downward } 0 4 {A19R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A31R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A20R:C -> A21R:G: adjacent_5p upward } 0 7 {A21R:G -> A20R:C: adjacent_3p downward } 0 8 {A20R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A28R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A21R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A27R:C -> A28R:G: adjacent_5p upward } 0 13 {A28R:G -> A27R:C: adjacent_3p downward } 0 14 {A28R:G -> A29R:A: adjacent_5p } 0 15 {A29R:A -> A28R:G: adjacent_3p } 0 16 {A28R:G -> A31R:C: pairing antiparallel cis one_hbond Sw/Ss } 0 17 {A31R:C -> A28R:G: pairing antiparallel cis one_hbond Ss/Sw } 0 18 {A29R:A -> A30R:U: adjacent_5p } 0 19 {A30R:U -> A29R:A: adjacent_3p } 0 20 {A30R:U -> A31R:C: adjacent_5p } 0 21 {A31R:C -> A30R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . 16 5 3 . . . 15 . 18 . 6 . . . . . 19 . 20 7 5 . . . 17 . 21 . [GraphModel] [Vertices] 0 A39R:C 0 1 A40R:A 0 2 A41R:G 0 3 A9R:C 0 4 A10R:C 0 5 A11R:G 0 6 A12R:A 0 7 A13R:G 0 [Edges] 0 {A9R:C -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:G: adjacent_5p } 0 5 {A11R:G -> A10R:C: adjacent_3p } 0 6 {A10R:C -> A40R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 7 {A40R:A -> A10R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 8 {A11R:G -> A12R:A: adjacent_5p upward } 0 9 {A12R:A -> A11R:G: adjacent_3p downward } 0 10 {A12R:A -> A13R:G: adjacent_5p } 0 11 {A13R:G -> A12R:A: adjacent_3p } 0 12 {A13R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A39R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A39R:C -> A40R:A: adjacent_5p upward } 0 15 {A40R:A -> A39R:C: adjacent_3p downward } 0 16 {A40R:A -> A41R:G: adjacent_5p upward } 0 17 {A41R:G -> A40R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A62R:U 0 1 A63R:C 0 2 A64R:G 0 3 A101R:A 0 4 A102R:G 0 5 A103R:C 0 6 A104R:G 0 7 A105R:G 0 [Edges] 0 {A62R:U -> A63R:C: adjacent_5p } 0 1 {A63R:C -> A62R:U: adjacent_3p } 0 2 {A62R:U -> A105R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A105R:G -> A62R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A63R:C -> A64R:G: adjacent_5p } 0 5 {A64R:G -> A63R:C: adjacent_3p } 0 6 {A63R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A104R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A64R:G -> A101R:A: pairing antiparallel trans one_hbond Wh/Bh } 0 9 {A101R:A -> A64R:G: pairing antiparallel trans one_hbond Bh/Wh } 0 10 {A101R:A -> A102R:G: adjacent_5p upward } 0 11 {A102R:G -> A101R:A: adjacent_3p downward } 0 12 {A102R:G -> A103R:C: adjacent_5p upward } 0 13 {A103R:C -> A102R:G: adjacent_3p downward } 0 14 {A103R:C -> A104R:G: adjacent_5p upward } 0 15 {A104R:G -> A103R:C: adjacent_3p downward } 0 16 {A104R:G -> A105R:G: adjacent_5p upward } 0 17 {A105R:G -> A104R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A102R:G 0 1 A103R:C 0 2 A104R:G 0 3 A63R:C 0 4 A64R:G 0 5 A65R:U 0 6 A66R:G 0 7 A67R:C 0 [Edges] 0 {A63R:C -> A64R:G: adjacent_5p } 0 1 {A64R:G -> A63R:C: adjacent_3p } 0 2 {A63R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A104R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A64R:G -> A65R:U: adjacent_5p } 0 5 {A65R:U -> A64R:G: adjacent_3p } 0 6 {A65R:U -> A66R:G: adjacent_5p } 0 7 {A66R:G -> A65R:U: adjacent_3p } 0 8 {A66R:G -> A67R:C: adjacent_5p upward } 0 9 {A67R:C -> A66R:G: adjacent_3p downward } 0 10 {A66R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A103R:C -> A66R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A67R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A102R:G -> A67R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A102R:G -> A103R:C: adjacent_5p upward } 0 15 {A103R:C -> A102R:G: adjacent_3p downward } 0 16 {A103R:C -> A104R:G: adjacent_5p upward } 0 17 {A104R:G -> A103R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 A103R:C 0 1 A104R:G 0 2 A105R:G 0 3 A62R:U 0 4 A63R:C 0 5 A64R:G 0 6 A65R:U 0 7 A66R:G 0 [Edges] 0 {A62R:U -> A63R:C: adjacent_5p } 0 1 {A63R:C -> A62R:U: adjacent_3p } 0 2 {A62R:U -> A105R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A105R:G -> A62R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A63R:C -> A64R:G: adjacent_5p } 0 5 {A64R:G -> A63R:C: adjacent_3p } 0 6 {A63R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A104R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A64R:G -> A65R:U: adjacent_5p } 0 9 {A65R:U -> A64R:G: adjacent_3p } 0 10 {A65R:U -> A66R:G: adjacent_5p } 0 11 {A66R:G -> A65R:U: adjacent_3p } 0 12 {A66R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A103R:C -> A66R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A103R:C -> A104R:G: adjacent_5p upward } 0 15 {A104R:G -> A103R:C: adjacent_3p downward } 0 16 {A104R:G -> A105R:G: adjacent_5p upward } 0 17 {A105R:G -> A104R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 A193R:C 0 1 A194R:C 0 2 A195R:A 0 3 A180R:U 0 4 A181R:G 0 5 A182R:U 0 6 A183R:G 0 7 A184R:G 0 [Edges] 0 {A180R:U -> A181R:G: adjacent_5p } 0 1 {A181R:G -> A180R:U: adjacent_3p } 0 2 {A180R:U -> A195R:A: pairing antiparallel trans Ww/Hh } 0 3 {A195R:A -> A180R:U: pairing antiparallel trans Hh/Ww } 0 4 {A181R:G -> A182R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 5 {A182R:U -> A181R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 6 {A181R:G -> A195R:A: outward } 0 7 {A195R:A -> A181R:G: outward } 0 8 {A182R:U -> A183R:G: adjacent_5p upward } 0 9 {A183R:G -> A182R:U: adjacent_3p downward } 0 10 {A183R:G -> A184R:G: adjacent_5p upward } 0 11 {A184R:G -> A183R:G: adjacent_3p downward } 0 12 {A183R:G -> A194R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A194R:C -> A183R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A184R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A193R:C -> A184R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A193R:C -> A194R:C: adjacent_5p } 0 17 {A194R:C -> A193R:C: adjacent_3p } 0 18 {A194R:C -> A195R:A: adjacent_5p } 0 19 {A195R:A -> A194R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 3 7 . . . 3 . . 2 . 0 . . . 4 . . 6 1 . 4 . . 5 . . . . 5 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 A194R:C 0 1 A195R:A 0 2 A196R:A 0 3 A179R:A 0 4 A180R:U 0 5 A181R:G 0 6 A182R:U 0 7 A183R:G 0 [Edges] 0 {A179R:A -> A180R:U: adjacent_5p upward } 0 1 {A180R:U -> A179R:A: adjacent_3p downward } 0 2 {A179R:A -> A196R:A: pairing antiparallel trans V Ww/Hh } 0 3 {A196R:A -> A179R:A: pairing antiparallel trans V Hh/Ww } 0 4 {A180R:U -> A181R:G: adjacent_5p } 0 5 {A181R:G -> A180R:U: adjacent_3p } 0 6 {A180R:U -> A195R:A: pairing antiparallel trans Ww/Hh } 0 7 {A195R:A -> A180R:U: pairing antiparallel trans Hh/Ww } 0 8 {A180R:U -> A196R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 9 {A196R:A -> A180R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 10 {A181R:G -> A182R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A182R:U -> A181R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {A181R:G -> A195R:A: outward } 0 13 {A195R:A -> A181R:G: outward } 0 14 {A182R:U -> A183R:G: adjacent_5p upward } 0 15 {A183R:G -> A182R:U: adjacent_3p downward } 0 16 {A183R:G -> A194R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {A194R:C -> A183R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A194R:C -> A195R:A: adjacent_5p } 0 19 {A195R:A -> A194R:C: adjacent_3p } 0 20 {A195R:A -> A196R:A: adjacent_5p upward } 0 21 {A196R:A -> A195R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . 7 13 . . 2 . 21 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 . 12 . . 5 . 10 . 6 . . . . . 11 . 14 7 16 . . . . . 15 . [GraphModel] [Vertices] 0 A230R:G 0 1 A231R:G 0 2 A232R:G 0 3 A129R:U 0 4 A129.AR:G 0 5 A130R:A 0 6 A131R:C 0 7 A132R:C 0 [Edges] 0 {A129R:U -> A129.AR:G: adjacent_5p } 0 1 {A129.AR:G -> A129R:U: adjacent_3p } 0 2 {A129R:U -> A232R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A232R:G -> A129R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A129.AR:G -> A130R:A: adjacent_5p } 0 5 {A130R:A -> A129.AR:G: adjacent_3p } 0 6 {A130R:A -> A131R:C: adjacent_5p } 0 7 {A131R:C -> A130R:A: adjacent_3p } 0 8 {A131R:C -> A132R:C: adjacent_5p } 0 9 {A132R:C -> A131R:C: adjacent_3p } 0 10 {A131R:C -> A231R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A231R:G -> A131R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A131R:C -> A232R:G: outward } 0 13 {A232R:G -> A131R:C: outward } 0 14 {A132R:C -> A230R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A230R:G -> A132R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A230R:G -> A231R:G: adjacent_5p upward } 0 17 {A231R:G -> A230R:G: adjacent_3p downward } 0 18 {A231R:G -> A232R:G: adjacent_5p upward } 0 19 {A232R:G -> A231R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 11 . 2 . 19 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 . . . . . 9 . [GraphModel] [Vertices] 0 A231R:G 0 1 A232R:G 0 2 A233R:C 0 3 A128R:G 0 4 A129R:U 0 5 A129.AR:G 0 6 A130R:A 0 7 A131R:C 0 [Edges] 0 {A128R:G -> A129R:U: adjacent_5p upward } 0 1 {A129R:U -> A128R:G: adjacent_3p downward } 0 2 {A128R:G -> A233R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A233R:C -> A128R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A129R:U -> A129.AR:G: adjacent_5p } 0 5 {A129.AR:G -> A129R:U: adjacent_3p } 0 6 {A129R:U -> A232R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A232R:G -> A129R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A129.AR:G -> A130R:A: adjacent_5p } 0 9 {A130R:A -> A129.AR:G: adjacent_3p } 0 10 {A130R:A -> A131R:C: adjacent_5p } 0 11 {A131R:C -> A130R:A: adjacent_3p } 0 12 {A131R:C -> A231R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A231R:G -> A131R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A131R:C -> A232R:G: outward } 0 15 {A232R:G -> A131R:C: outward } 0 16 {A231R:G -> A232R:G: adjacent_5p upward } 0 17 {A232R:G -> A231R:G: adjacent_3p downward } 0 18 {A232R:G -> A233R:C: adjacent_5p upward } 0 19 {A233R:C -> A232R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . 7 . . 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 14 . . . . 11 . [GraphModel] [Vertices] 0 A273R:A 0 1 A274R:A 0 2 A275R:G 0 3 A249R:U 0 4 A250R:A 0 5 A251R:G 0 6 A252R:U 0 7 A253R:U 0 [Edges] 0 {A249R:U -> A250R:A: adjacent_5p } 0 1 {A250R:A -> A249R:U: adjacent_3p } 0 2 {A249R:U -> A275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A275R:G -> A249R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A250R:A -> A251R:G: adjacent_5p } 0 5 {A251R:G -> A250R:A: adjacent_3p } 0 6 {A250R:A -> A252R:U: outward } 0 7 {A252R:U -> A250R:A: outward } 0 8 {A251R:G -> A252R:U: adjacent_5p } 0 9 {A252R:U -> A251R:G: adjacent_3p } 0 10 {A252R:U -> A253R:U: adjacent_5p } 0 11 {A253R:U -> A252R:U: adjacent_3p } 0 12 {A252R:U -> A274R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A274R:A -> A252R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A253R:U -> A273R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A273R:A -> A253R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A273R:A -> A274R:A: adjacent_5p upward } 0 17 {A274R:A -> A273R:A: adjacent_3p downward } 0 18 {A274R:A -> A275R:G: adjacent_5p } 0 19 {A275R:G -> A274R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 6 . 5 . . . . 5 . 8 . 6 . 12 . . 7 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 A274R:A 0 1 A275R:G 0 2 A276R:G 0 3 A248R:C 0 4 A249R:U 0 5 A250R:A 0 6 A251R:G 0 7 A252R:U 0 [Edges] 0 {A248R:C -> A249R:U: adjacent_5p upward } 0 1 {A249R:U -> A248R:C: adjacent_3p downward } 0 2 {A248R:C -> A276R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A276R:G -> A248R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A249R:U -> A250R:A: adjacent_5p } 0 5 {A250R:A -> A249R:U: adjacent_3p } 0 6 {A249R:U -> A275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A275R:G -> A249R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A250R:A -> A251R:G: adjacent_5p } 0 9 {A251R:G -> A250R:A: adjacent_3p } 0 10 {A250R:A -> A252R:U: outward } 0 11 {A252R:U -> A250R:A: outward } 0 12 {A251R:G -> A252R:U: adjacent_5p } 0 13 {A252R:U -> A251R:G: adjacent_3p } 0 14 {A252R:U -> A274R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A274R:A -> A252R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A274R:A -> A275R:G: adjacent_5p } 0 17 {A275R:G -> A274R:A: adjacent_3p } 0 18 {A275R:G -> A276R:G: adjacent_5p upward } 0 19 {A276R:G -> A275R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . 7 . . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 10 6 . . . . . 9 . 12 7 14 . . . . 11 13 . [GraphModel] [Vertices] 0 A283R:C 0 1 A284R:G 0 2 A285R:G 0 3 A241R:C 0 4 A242R:C 0 5 A243R:A 0 6 A244R:U 0 7 A245R:C 0 [Edges] 0 {A241R:C -> A242R:C: adjacent_5p } 0 1 {A242R:C -> A241R:C: adjacent_3p } 0 2 {A241R:C -> A285R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A285R:G -> A241R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A242R:C -> A243R:A: adjacent_5p } 0 5 {A243R:A -> A242R:C: adjacent_3p } 0 6 {A242R:C -> A284R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A284R:G -> A242R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A243R:A -> A244R:U: adjacent_5p } 0 9 {A244R:U -> A243R:A: adjacent_3p } 0 10 {A243R:A -> A245R:C: downward } 0 11 {A245R:C -> A243R:A: upward } 0 12 {A244R:U -> A245R:C: adjacent_5p } 0 13 {A245R:C -> A244R:U: adjacent_3p } 0 14 {A245R:C -> A283R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 15 {A283R:C -> A245R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 16 {A245R:C -> A284R:G: outward } 0 17 {A284R:G -> A245R:C: outward } 0 18 {A283R:C -> A284R:G: adjacent_5p } 0 19 {A284R:G -> A283R:C: adjacent_3p } 0 20 {A284R:G -> A285R:G: adjacent_5p upward } 0 21 {A285R:G -> A284R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . 7 . . 17 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 10 6 . . . . . 9 . 12 7 14 16 . . . 11 13 . [GraphModel] [Vertices] 0 A313R:A 0 1 A314R:C 0 2 A315R:A 0 3 A112R:G 0 4 A113R:G 0 5 A114R:U 0 6 A115R:G 0 7 A116R:A 0 [Edges] 0 {A112R:G -> A113R:G: adjacent_5p upward } 0 1 {A113R:G -> A112R:G: adjacent_3p downward } 0 2 {A112R:G -> A315R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A315R:A -> A112R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A113R:G -> A114R:U: adjacent_5p upward } 0 5 {A114R:U -> A113R:G: adjacent_3p downward } 0 6 {A113R:G -> A314R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A314R:C -> A113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A113R:G -> A315R:A: outward } 0 9 {A315R:A -> A113R:G: outward } 0 10 {A114R:U -> A115R:G: adjacent_5p upward } 0 11 {A115R:G -> A114R:U: adjacent_3p downward } 0 12 {A114R:U -> A313R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A313R:A -> A114R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A115R:G -> A116R:A: adjacent_5p } 0 15 {A116R:A -> A115R:G: adjacent_3p } 0 16 {A115R:G -> A313R:A: outward } 0 17 {A313R:A -> A115R:G: outward } 0 18 {A116R:A -> A313R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 19 {A313R:A -> A116R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 20 {A313R:A -> A314R:C: adjacent_5p upward } 0 21 {A314R:C -> A313R:A: adjacent_3p downward } 0 22 {A314R:C -> A315R:A: adjacent_5p upward } 0 23 {A315R:A -> A314R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 20 . . . 13 17 19 1 21 . 22 . 7 . . . 2 . 23 . 3 9 . . . 3 . . 2 . 0 . . . 4 . 6 8 1 . 4 . . 5 12 . . . 5 . 10 . 6 16 . . . . 11 . 14 7 18 . . . . . 15 . [GraphModel] [Vertices] 0 A320R:C 0 1 A321R:A 0 2 A322R:C 0 3 A329R:A 0 4 A330R:C 0 5 A331R:G 0 6 A332R:G 0 7 A333R:G 0 [Edges] 0 {A320R:C -> A321R:A: adjacent_5p upward } 0 1 {A321R:A -> A320R:C: adjacent_3p downward } 0 2 {A320R:C -> A333R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A333R:G -> A320R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A321R:A -> A322R:C: adjacent_5p upward } 0 5 {A322R:C -> A321R:A: adjacent_3p downward } 0 6 {A321R:A -> A332R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {A332R:G -> A321R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A321R:A -> A333R:G: outward } 0 9 {A333R:G -> A321R:A: outward } 0 10 {A322R:C -> A329R:A: pairing antiparallel trans XXV Ww/Hh } 0 11 {A329R:A -> A322R:C: pairing antiparallel trans XXV Hh/Ww } 0 12 {A329R:A -> A330R:C: adjacent_5p } 0 13 {A330R:C -> A329R:A: adjacent_3p } 0 14 {A329R:A -> A332R:G: upward } 0 15 {A332R:G -> A329R:A: downward } 0 16 {A330R:C -> A331R:G: adjacent_5p } 0 17 {A331R:G -> A330R:C: adjacent_3p } 0 18 {A331R:G -> A332R:G: adjacent_5p } 0 19 {A332R:G -> A331R:G: adjacent_3p } 0 20 {A332R:G -> A333R:G: adjacent_5p upward } 0 21 {A333R:G -> A332R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . . . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 7 . 15 . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A387R:U 0 1 A388R:G 0 2 A389R:A 0 3 A372R:C 0 4 A373R:A 0 5 A374R:A 0 6 A375R:U 0 7 A376R:G 0 [Edges] 0 {A372R:C -> A373R:A: adjacent_5p } 0 1 {A373R:A -> A372R:C: adjacent_3p } 0 2 {A372R:C -> A387R:U: inward } 0 3 {A387R:U -> A372R:C: inward } 0 4 {A372R:C -> A389R:A: pairing antiparallel trans XXV Ww/Hh } 0 5 {A389R:A -> A372R:C: pairing antiparallel trans XXV Hh/Ww } 0 6 {A373R:A -> A374R:A: adjacent_5p upward } 0 7 {A374R:A -> A373R:A: adjacent_3p downward } 0 8 {A374R:A -> A375R:U: adjacent_5p upward } 0 9 {A375R:U -> A374R:A: adjacent_3p downward } 0 10 {A375R:U -> A376R:G: adjacent_5p upward } 0 11 {A376R:G -> A375R:U: adjacent_3p downward } 0 12 {A375R:U -> A389R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A389R:A -> A375R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A376R:G -> A387R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A387R:U -> A376R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A376R:G -> A389R:A: outward } 0 17 {A389R:A -> A376R:G: outward } 0 18 {A387R:U -> A388R:G: adjacent_5p } 0 19 {A388R:G -> A387R:U: adjacent_3p } 0 20 {A388R:G -> A389R:A: adjacent_5p } 0 21 {A389R:A -> A388R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . 3 . . . 15 1 19 . 20 . . . . . 2 . 21 . 5 . . 13 17 3 2 . 4 . 0 . . . 4 . . . 1 . 6 . . 5 . . . . 7 . 8 . 6 . . 12 . . 9 . 10 7 14 . 16 . . . 11 . [GraphModel] [Vertices] 0 A514R:C 0 1 A515R:G 0 2 A516R:U 0 3 A533R:A 0 4 A534R:U 0 5 A535R:A 0 6 A536R:C 0 7 A537R:G 0 [Edges] 0 {A514R:C -> A515R:G: adjacent_5p upward } 0 1 {A515R:G -> A514R:C: adjacent_3p downward } 0 2 {A514R:C -> A537R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A537R:G -> A514R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A515R:G -> A516R:U: adjacent_5p upward } 0 5 {A516R:U -> A515R:G: adjacent_3p downward } 0 6 {A515R:G -> A536R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A536R:C -> A515R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A515R:G -> A537R:G: outward } 0 9 {A537R:G -> A515R:G: outward } 0 10 {A516R:U -> A533R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {A533R:A -> A516R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {A533R:A -> A534R:U: adjacent_5p } 0 13 {A534R:U -> A533R:A: adjacent_3p } 0 14 {A533R:A -> A536R:C: upward } 0 15 {A536R:C -> A533R:A: downward } 0 16 {A534R:U -> A535R:A: adjacent_5p } 0 17 {A535R:A -> A534R:U: adjacent_3p } 0 18 {A535R:A -> A536R:C: adjacent_5p } 0 19 {A536R:C -> A535R:A: adjacent_3p } 0 20 {A536R:C -> A537R:G: adjacent_5p } 0 21 {A537R:G -> A536R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . . . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 7 . 15 . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A596R:C 0 1 A597R:G 0 2 A598R:U 0 3 A640R:A 0 4 A641R:U 0 5 A642R:A 0 6 A643R:C 0 7 A644R:G 0 [Edges] 0 {A596R:C -> A597R:G: adjacent_5p } 0 1 {A597R:G -> A596R:C: adjacent_3p } 0 2 {A596R:C -> A644R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A644R:G -> A596R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A597R:G -> A598R:U: adjacent_5p upward } 0 5 {A598R:U -> A597R:G: adjacent_3p downward } 0 6 {A597R:G -> A643R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A643R:C -> A597R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A597R:G -> A644R:G: outward } 0 9 {A644R:G -> A597R:G: outward } 0 10 {A598R:U -> A640R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A640R:A -> A598R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A640R:A -> A641R:U: adjacent_5p upward } 0 13 {A641R:U -> A640R:A: adjacent_3p downward } 0 14 {A641R:U -> A642R:A: adjacent_5p pairing parallel cis one_hbond Bs/Hw } 0 15 {A642R:A -> A641R:U: adjacent_3p pairing parallel cis one_hbond Hw/Bs } 0 16 {A642R:A -> A643R:C: adjacent_5p upward } 0 17 {A643R:C -> A642R:A: adjacent_3p downward } 0 18 {A643R:C -> A644R:G: adjacent_5p upward } 0 19 {A644R:G -> A643R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A597R:G 0 1 A598R:U 0 2 A599R:C 0 3 A639R:G 0 4 A640R:A 0 5 A641R:U 0 6 A642R:A 0 7 A643R:C 0 [Edges] 0 {A597R:G -> A598R:U: adjacent_5p upward } 0 1 {A598R:U -> A597R:G: adjacent_3p downward } 0 2 {A597R:G -> A643R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A643R:C -> A597R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A598R:U -> A599R:C: adjacent_5p upward } 0 5 {A599R:C -> A598R:U: adjacent_3p downward } 0 6 {A598R:U -> A640R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A640R:A -> A598R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A599R:C -> A639R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A639R:G -> A599R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A639R:G -> A640R:A: adjacent_5p upward } 0 11 {A640R:A -> A639R:G: adjacent_3p downward } 0 12 {A640R:A -> A641R:U: adjacent_5p upward } 0 13 {A641R:U -> A640R:A: adjacent_3p downward } 0 14 {A641R:U -> A642R:A: adjacent_5p pairing parallel cis one_hbond Bs/Hw } 0 15 {A642R:A -> A641R:U: adjacent_3p pairing parallel cis one_hbond Hw/Bs } 0 16 {A642R:A -> A643R:C: adjacent_5p upward } 0 17 {A643R:C -> A642R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A654R:G 0 1 A655R:A 0 2 A656R:C 0 3 A750R:G 0 4 A751R:U 0 5 A752R:G 0 6 A753R:A 0 7 A754R:C 0 [Edges] 0 {A654R:G -> A655R:A: adjacent_5p upward } 0 1 {A655R:A -> A654R:G: adjacent_3p downward } 0 2 {A654R:G -> A752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A752R:G -> A654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A654R:G -> A753R:A: outward } 0 5 {A753R:A -> A654R:G: outward } 0 6 {A654R:G -> A754R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A754R:C -> A654R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A655R:A -> A656R:C: adjacent_5p upward } 0 9 {A656R:C -> A655R:A: adjacent_3p downward } 0 10 {A655R:A -> A751R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A751R:U -> A655R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A656R:C -> A750R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A750R:G -> A656R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A750R:G -> A751R:U: adjacent_5p upward } 0 15 {A751R:U -> A750R:G: adjacent_3p downward } 0 16 {A751R:U -> A752R:G: adjacent_5p upward } 0 17 {A752R:G -> A751R:U: adjacent_3p downward } 0 18 {A752R:G -> A753R:A: adjacent_5p } 0 19 {A753R:A -> A752R:G: adjacent_3p } 0 20 {A753R:A -> A754R:C: adjacent_5p } 0 21 {A754R:C -> A753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 4 6 1 1 . 8 . 10 . . . 2 . 9 . 12 . . . . 3 . . 13 . 14 . . . 4 . 11 . 15 . 16 . . 5 3 . . . 17 . 18 . 6 5 . . . . 19 . 20 7 7 . . . . . 21 . [GraphModel] [Vertices] 0 A704R:A 0 1 A705R:U 0 2 A706R:A 0 3 A684R:A 0 4 A685R:G 0 5 A686R:U 0 6 A687R:A 0 7 A688R:G 0 [Edges] 0 {A684R:A -> A685R:G: adjacent_5p upward } 0 1 {A685R:G -> A684R:A: adjacent_3p downward } 0 2 {A684R:A -> A706R:A: pairing antiparallel cis 37 Ww/Ww } 0 3 {A706R:A -> A684R:A: pairing antiparallel cis 37 Ww/Ww } 0 4 {A685R:G -> A686R:U: adjacent_5p upward } 0 5 {A686R:U -> A685R:G: adjacent_3p downward } 0 6 {A685R:G -> A705R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 7 {A705R:U -> A685R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 8 {A686R:U -> A687R:A: adjacent_5p } 0 9 {A687R:A -> A686R:U: adjacent_3p } 0 10 {A686R:U -> A704R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {A704R:A -> A686R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {A687R:A -> A688R:G: adjacent_5p } 0 13 {A688R:G -> A687R:A: adjacent_3p } 0 14 {A687R:A -> A704R:A: outward } 0 15 {A704R:A -> A687R:A: outward } 0 16 {A688R:G -> A704R:A: pairing parallel trans one_hbond Ss/Ss } 0 17 {A704R:A -> A688R:G: pairing parallel trans one_hbond Ss/Ss } 0 18 {A704R:A -> A705R:U: adjacent_5p upward } 0 19 {A705R:U -> A704R:A: adjacent_3p downward } 0 20 {A705R:U -> A706R:A: adjacent_5p upward } 0 21 {A706R:A -> A705R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . 11 15 17 1 19 . 20 . 7 . . . 2 . 21 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 14 . . . . 9 . 12 7 16 . . . . . 13 . [GraphModel] [Vertices] 0 A731R:G 0 1 A732R:C 0 2 A733R:A 0 3 A722R:A 0 4 A723R:U 0 5 A724R:G 0 6 A725R:G 0 7 A726R:C 0 [Edges] 0 {A722R:A -> A723R:U: adjacent_5p } 0 1 {A723R:U -> A722R:A: adjacent_3p } 0 2 {A722R:A -> A724R:G: outward } 0 3 {A724R:G -> A722R:A: outward } 0 4 {A722R:A -> A733R:A: pairing parallel trans I Ww/Ww } 0 5 {A733R:A -> A722R:A: pairing parallel trans I Ww/Ww } 0 6 {A723R:U -> A724R:G: adjacent_5p } 0 7 {A724R:G -> A723R:U: adjacent_3p } 0 8 {A724R:G -> A725R:G: adjacent_5p upward } 0 9 {A725R:G -> A724R:G: adjacent_3p downward } 0 10 {A725R:G -> A726R:C: adjacent_5p upward } 0 11 {A726R:C -> A725R:G: adjacent_3p downward } 0 12 {A725R:G -> A732R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A732R:C -> A725R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A726R:C -> A731R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A731R:G -> A726R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A731R:G -> A732R:C: adjacent_5p upward } 0 17 {A732R:C -> A731R:G: adjacent_3p downward } 0 18 {A732R:C -> A733R:A: adjacent_5p } 0 19 {A733R:A -> A732R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 . . . 9 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 A933R:G 0 1 A934R:C 0 2 A935R:A 0 3 A1380R:U 0 4 A1381R:U 0 5 A1382R:C 0 6 A1383R:C 0 7 A1384R:C 0 [Edges] 0 {A933R:G -> A934R:C: adjacent_5p } 0 1 {A934R:C -> A933R:G: adjacent_3p } 0 2 {A933R:G -> A935R:A: upward } 0 3 {A935R:A -> A933R:G: downward } 0 4 {A933R:G -> A1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A1384R:C -> A933R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A934R:C -> A935R:A: adjacent_5p } 0 7 {A935R:A -> A934R:C: adjacent_3p } 0 8 {A935R:A -> A1380R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A1380R:U -> A935R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A935R:A -> A1383R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 11 {A1383R:C -> A935R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 12 {A1380R:U -> A1381R:U: adjacent_5p } 0 13 {A1381R:U -> A1380R:U: adjacent_3p } 0 14 {A1381R:U -> A1382R:C: adjacent_5p } 0 15 {A1382R:C -> A1381R:U: adjacent_3p } 0 16 {A1382R:C -> A1383R:C: adjacent_5p } 0 17 {A1383R:C -> A1382R:C: adjacent_3p } 0 18 {A1383R:C -> A1384R:C: adjacent_5p upward } 0 19 {A1384R:C -> A1383R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . . . 2 3 7 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . 11 . . 17 . 18 7 5 . . . . . 19 . [GraphModel] [Vertices] 0 A1046R:A 0 1 A1047R:G 0 2 A1048R:G 0 3 A1209R:C 0 4 A1210R:C 0 5 A1211R:U 0 6 A1212R:U 0 7 A1213R:A 0 [Edges] 0 {A1046R:A -> A1047R:G: adjacent_5p upward } 0 1 {A1047R:G -> A1046R:A: adjacent_3p downward } 0 2 {A1046R:A -> A1211R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 3 {A1211R:U -> A1046R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 4 {A1046R:A -> A1213R:A: pairing parallel trans one_hbond Ww/Ww } 0 5 {A1213R:A -> A1046R:A: pairing parallel trans one_hbond Ww/Ww } 0 6 {A1047R:G -> A1048R:G: adjacent_5p upward } 0 7 {A1048R:G -> A1047R:G: adjacent_3p downward } 0 8 {A1047R:G -> A1210R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A1210R:C -> A1047R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A1048R:G -> A1209R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1209R:C -> A1048R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1209R:C -> A1210R:C: adjacent_5p } 0 13 {A1210R:C -> A1209R:C: adjacent_3p } 0 14 {A1210R:C -> A1211R:U: adjacent_5p upward } 0 15 {A1211R:U -> A1210R:C: adjacent_3p downward } 0 16 {A1211R:U -> A1212R:U: adjacent_5p } 0 17 {A1212R:U -> A1211R:U: adjacent_3p } 0 18 {A1212R:U -> A1213R:A: adjacent_5p } 0 19 {A1213R:A -> A1212R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . . 5 3 . . . 15 . 16 . 6 . . . . . 17 . 18 7 5 . . . . . 19 . [GraphModel] [Vertices] 0 A1143R:G 0 1 A1144R:G 0 2 A1145R:C 0 3 A1127R:G 0 4 A1128R:C 0 5 A1129R:C 0 6 A1130R:A 0 7 A1131R:G 0 [Edges] 0 {A1127R:G -> A1128R:C: adjacent_5p } 0 1 {A1128R:C -> A1127R:G: adjacent_3p } 0 2 {A1127R:G -> A1145R:C: pairing antiparallel cis one_hbond Ww/Ss } 0 3 {A1145R:C -> A1127R:G: pairing antiparallel cis one_hbond Ss/Ww } 0 4 {A1128R:C -> A1129R:C: adjacent_5p } 0 5 {A1129R:C -> A1128R:C: adjacent_3p } 0 6 {A1128R:C -> A1143R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 7 {A1143R:G -> A1128R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 8 {A1129R:C -> A1130R:A: adjacent_5p } 0 9 {A1130R:A -> A1129R:C: adjacent_3p } 0 10 {A1130R:A -> A1131R:G: adjacent_5p } 0 11 {A1131R:G -> A1130R:A: adjacent_3p } 0 12 {A1131R:G -> A1143R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 13 {A1143R:G -> A1131R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 14 {A1143R:G -> A1144R:G: adjacent_5p upward } 0 15 {A1144R:G -> A1143R:G: adjacent_3p downward } 0 16 {A1144R:G -> A1145R:C: adjacent_5p } 0 17 {A1145R:C -> A1144R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . 7 . . 13 1 15 . 16 . . . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 6 . . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . [GraphModel] [Vertices] 0 A1198R:G 0 1 A1199R:U 0 2 A1200R:C 0 3 A1055R:A 0 4 A1056R:U 0 5 A1057R:G 0 6 A1058R:G 0 7 A1059R:C 0 [Edges] 0 {A1055R:A -> A1056R:U: adjacent_5p upward } 0 1 {A1056R:U -> A1055R:A: adjacent_3p downward } 0 2 {A1055R:A -> A1200R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {A1200R:C -> A1055R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A1056R:U -> A1057R:G: adjacent_5p } 0 5 {A1057R:G -> A1056R:U: adjacent_3p } 0 6 {A1057R:G -> A1058R:G: adjacent_5p upward } 0 7 {A1058R:G -> A1057R:G: adjacent_3p downward } 0 8 {A1058R:G -> A1059R:C: adjacent_5p upward } 0 9 {A1059R:C -> A1058R:G: adjacent_3p downward } 0 10 {A1058R:G -> A1199R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A1199R:U -> A1058R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A1059R:C -> A1198R:G: pairing antiparallel cis Ww/Ww } 0 13 {A1198R:G -> A1059R:C: pairing antiparallel cis Ww/Ww } 0 14 {A1198R:G -> A1199R:U: adjacent_5p upward } 0 15 {A1199R:U -> A1198R:G: adjacent_3p downward } 0 16 {A1199R:U -> A1200R:C: adjacent_5p } 0 17 {A1200R:C -> A1199R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 A1204R:A 0 1 A1205R:U 0 2 A1206R:G 0 3 A1052R:U 0 4 A1053R:G 0 5 A1054R:C 0 6 A1055R:A 0 7 A1056R:U 0 [Edges] 0 {A1052R:U -> A1053R:G: adjacent_5p } 0 1 {A1053R:G -> A1052R:U: adjacent_3p } 0 2 {A1052R:U -> A1206R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1206R:G -> A1052R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A1053R:G -> A1054R:C: adjacent_5p } 0 5 {A1054R:C -> A1053R:G: adjacent_3p } 0 6 {A1054R:C -> A1055R:A: adjacent_5p } 0 7 {A1055R:A -> A1054R:C: adjacent_3p } 0 8 {A1055R:A -> A1056R:U: adjacent_5p upward } 0 9 {A1056R:U -> A1055R:A: adjacent_3p downward } 0 10 {A1055R:A -> A1205R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 11 {A1205R:U -> A1055R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 12 {A1055R:A -> A1206R:G: outward } 0 13 {A1206R:G -> A1055R:A: outward } 0 14 {A1056R:U -> A1204R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A1204R:A -> A1056R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A1204R:A -> A1205R:U: adjacent_5p upward } 0 17 {A1205R:U -> A1204R:A: adjacent_3p downward } 0 18 {A1205R:U -> A1206R:G: adjacent_5p } 0 19 {A1206R:G -> A1205R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 11 . 2 . 19 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 . . . . . 9 . [GraphModel] [Vertices] 0 A1205R:U 0 1 A1206R:G 0 2 A1207R:G 0 3 A1051R:C 0 4 A1052R:U 0 5 A1053R:G 0 6 A1054R:C 0 7 A1055R:A 0 [Edges] 0 {A1051R:C -> A1052R:U: adjacent_5p } 0 1 {A1052R:U -> A1051R:C: adjacent_3p } 0 2 {A1051R:C -> A1207R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1207R:G -> A1051R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1052R:U -> A1053R:G: adjacent_5p } 0 5 {A1053R:G -> A1052R:U: adjacent_3p } 0 6 {A1052R:U -> A1206R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1206R:G -> A1052R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1053R:G -> A1054R:C: adjacent_5p } 0 9 {A1054R:C -> A1053R:G: adjacent_3p } 0 10 {A1054R:C -> A1055R:A: adjacent_5p } 0 11 {A1055R:A -> A1054R:C: adjacent_3p } 0 12 {A1055R:A -> A1205R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 13 {A1205R:U -> A1055R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 14 {A1055R:A -> A1206R:G: outward } 0 15 {A1206R:G -> A1055R:A: outward } 0 16 {A1205R:U -> A1206R:G: adjacent_5p } 0 17 {A1206R:G -> A1205R:U: adjacent_3p } 0 18 {A1206R:G -> A1207R:G: adjacent_5p upward } 0 19 {A1207R:G -> A1206R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . 7 . . 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A846R:C 0 1 A847R:U 0 2 A848R:C 0 3 A863R:G 0 4 A864R:A 0 5 A865R:A 0 6 A866R:U 0 7 A867R:G 0 [Edges] 0 {A846R:C -> A847R:U: adjacent_5p upward } 0 1 {A847R:U -> A846R:C: adjacent_3p downward } 0 2 {A846R:C -> A867R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A867R:G -> A846R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A847R:U -> A848R:C: adjacent_5p upward } 0 5 {A848R:C -> A847R:U: adjacent_3p downward } 0 6 {A847R:U -> A864R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A864R:A -> A847R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A848R:C -> A863R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A863R:G -> A848R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A863R:G -> A864R:A: adjacent_5p upward } 0 11 {A864R:A -> A863R:G: adjacent_3p downward } 0 12 {A864R:A -> A865R:A: adjacent_5p } 0 13 {A865R:A -> A864R:A: adjacent_3p } 0 14 {A865R:A -> A866R:U: adjacent_5p } 0 15 {A866R:U -> A865R:A: adjacent_3p } 0 16 {A865R:A -> A867R:G: downward } 0 17 {A867R:G -> A865R:A: upward } 0 18 {A866R:U -> A867R:G: adjacent_5p } 0 19 {A867R:G -> A866R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 16 6 . . . . . 15 . 18 7 3 . . . . 17 19 . [GraphModel] [Vertices] 0 A863R:G 0 1 A864R:A 0 2 A865R:A 0 3 A844R:U 0 4 A845R:G 0 5 A846R:C 0 6 A847R:U 0 7 A848R:C 0 [Edges] 0 {A844R:U -> A845R:G: adjacent_5p } 0 1 {A845R:G -> A844R:U: adjacent_3p } 0 2 {A844R:U -> A865R:A: pairing parallel trans XXI Ws/Ww } 0 3 {A865R:A -> A844R:U: pairing parallel trans XXI Ww/Ws } 0 4 {A845R:G -> A846R:C: adjacent_5p } 0 5 {A846R:C -> A845R:G: adjacent_3p } 0 6 {A846R:C -> A847R:U: adjacent_5p upward } 0 7 {A847R:U -> A846R:C: adjacent_3p downward } 0 8 {A847R:U -> A848R:C: adjacent_5p upward } 0 9 {A848R:C -> A847R:U: adjacent_3p downward } 0 10 {A847R:U -> A864R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A864R:A -> A847R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A848R:C -> A863R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A863R:G -> A848R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A863R:G -> A864R:A: adjacent_5p upward } 0 15 {A864R:A -> A863R:G: adjacent_3p downward } 0 16 {A864R:A -> A865R:A: adjacent_5p } 0 17 {A865R:A -> A864R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . [GraphModel] [Vertices] 0 A868R:C 0 1 A869R:C 0 2 A870R:C 0 3 B876R:G 0 4 B877R:G 0 5 B878R:A 0 6 B879R:U 0 7 B880R:G 0 [Edges] 0 {A868R:C -> A869R:C: adjacent_5p upward } 0 1 {A869R:C -> A868R:C: adjacent_3p downward } 0 2 {A868R:C -> B880R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B880R:G -> A868R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A869R:C -> A870R:C: adjacent_5p upward } 0 5 {A870R:C -> A869R:C: adjacent_3p downward } 0 6 {A869R:C -> B877R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B877R:G -> A869R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A870R:C -> B876R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B876R:G -> A870R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B876R:G -> B877R:G: adjacent_5p upward } 0 11 {B877R:G -> B876R:G: adjacent_3p downward } 0 12 {B877R:G -> B878R:A: adjacent_5p } 0 13 {B878R:A -> B877R:G: adjacent_3p } 0 14 {B878R:A -> B879R:U: adjacent_5p } 0 15 {B879R:U -> B878R:A: adjacent_3p } 0 16 {B878R:A -> B880R:G: downward } 0 17 {B880R:G -> B878R:A: upward } 0 18 {B879R:U -> B880R:G: adjacent_5p } 0 19 {B880R:G -> B879R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 16 6 . . . . . 15 . 18 7 3 . . . . 17 19 . [GraphModel] [Vertices] 0 B876R:G 0 1 B877R:G 0 2 B878R:A 0 3 A866R:U 0 4 A867R:G 0 5 A868R:C 0 6 A869R:C 0 7 A870R:C 0 [Edges] 0 {A866R:U -> A867R:G: adjacent_5p } 0 1 {A867R:G -> A866R:U: adjacent_3p } 0 2 {A866R:U -> B878R:A: pairing parallel trans XXI Ws/Ww } 0 3 {B878R:A -> A866R:U: pairing parallel trans XXI Ww/Ws } 0 4 {A867R:G -> A868R:C: adjacent_5p } 0 5 {A868R:C -> A867R:G: adjacent_3p } 0 6 {A868R:C -> A869R:C: adjacent_5p upward } 0 7 {A869R:C -> A868R:C: adjacent_3p downward } 0 8 {A869R:C -> A870R:C: adjacent_5p upward } 0 9 {A870R:C -> A869R:C: adjacent_3p downward } 0 10 {A869R:C -> B877R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B877R:G -> A869R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A870R:C -> B876R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B876R:G -> A870R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B876R:G -> B877R:G: adjacent_5p upward } 0 15 {B877R:G -> B876R:G: adjacent_3p downward } 0 16 {B877R:G -> B878R:A: adjacent_5p } 0 17 {B878R:A -> B877R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . . . 11 . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C105R:G 0 1 C106R:G 0 2 C107R:A 0 3 C131R:U 0 4 C132R:U 0 5 C133R:U 0 6 C134R:A 0 7 C135R:A 0 [Edges] 0 {C105R:G -> C106R:G: adjacent_5p upward } 0 1 {C106R:G -> C105R:G: adjacent_3p downward } 0 2 {C105R:G -> C135R:A: pairing parallel trans 57 Ss/Ss } 0 3 {C135R:A -> C105R:G: pairing parallel trans 57 Ss/Ss } 0 4 {C106R:G -> C107R:A: adjacent_5p } 0 5 {C107R:A -> C106R:G: adjacent_3p } 0 6 {C107R:A -> C131R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C131R:U -> C107R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C131R:U -> C132R:U: adjacent_5p upward } 0 9 {C132R:U -> C131R:U: adjacent_3p downward } 0 10 {C132R:U -> C133R:U: adjacent_5p upward } 0 11 {C133R:U -> C132R:U: adjacent_3p downward } 0 12 {C133R:U -> C134R:A: adjacent_5p } 0 13 {C134R:A -> C133R:U: adjacent_3p } 0 14 {C134R:A -> C135R:A: adjacent_5p upward } 0 15 {C135R:A -> C134R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 C150R:C 0 1 C151R:U 0 2 C152R:C 0 3 C137R:G 0 4 C138R:A 0 5 C139R:G 0 6 C140R:U 0 7 C141R:G 0 [Edges] 0 {C137R:G -> C138R:A: adjacent_5p } 0 1 {C138R:A -> C137R:G: adjacent_3p } 0 2 {C137R:G -> C139R:G: upward } 0 3 {C139R:G -> C137R:G: downward } 0 4 {C137R:G -> C152R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C152R:C -> C137R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C138R:A -> C139R:G: adjacent_5p } 0 7 {C139R:G -> C138R:A: adjacent_3p } 0 8 {C139R:G -> C140R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {C140R:U -> C139R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {C139R:G -> C151R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 11 {C151R:U -> C139R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 12 {C140R:U -> C141R:G: adjacent_5p upward } 0 13 {C141R:G -> C140R:U: adjacent_3p downward } 0 14 {C140R:U -> C151R:U: pairing antiparallel cis XVI Ww/Ws } 0 15 {C151R:U -> C140R:U: pairing antiparallel cis XVI Ws/Ww } 0 16 {C140R:U -> C152R:C: outward } 0 17 {C152R:C -> C140R:U: outward } 0 18 {C141R:G -> C150R:C: pairing antiparallel cis XIX Ww/Ww } 0 19 {C150R:C -> C141R:G: pairing antiparallel cis XIX Ww/Ww } 0 20 {C150R:C -> C151R:U: adjacent_5p upward } 0 21 {C151R:U -> C150R:C: adjacent_3p downward } 0 22 {C151R:U -> C152R:C: adjacent_5p } 0 23 {C152R:C -> C151R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 20 . . . . . 19 1 21 . 22 . . 11 15 . 2 . 23 . 5 . . 17 . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . 10 . 3 7 . 8 . 6 . 14 16 . . 9 . 12 7 18 . . . . . 13 . [GraphModel] [Vertices] 0 D305R:G 0 1 D306R:G 0 2 D307R:A 0 3 D331R:U 0 4 D332R:U 0 5 D333R:U 0 6 D334R:A 0 7 D335R:A 0 [Edges] 0 {D305R:G -> D306R:G: adjacent_5p upward } 0 1 {D306R:G -> D305R:G: adjacent_3p downward } 0 2 {D305R:G -> D335R:A: pairing parallel trans 57 Ss/Ss } 0 3 {D335R:A -> D305R:G: pairing parallel trans 57 Ss/Ss } 0 4 {D306R:G -> D307R:A: adjacent_5p } 0 5 {D307R:A -> D306R:G: adjacent_3p } 0 6 {D307R:A -> D331R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D331R:U -> D307R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D331R:U -> D332R:U: adjacent_5p } 0 9 {D332R:U -> D331R:U: adjacent_3p } 0 10 {D332R:U -> D333R:U: adjacent_5p upward } 0 11 {D333R:U -> D332R:U: adjacent_3p downward } 0 12 {D333R:U -> D334R:A: adjacent_5p } 0 13 {D334R:A -> D333R:U: adjacent_3p } 0 14 {D334R:A -> D335R:A: adjacent_5p upward } 0 15 {D335R:A -> D334R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 D350R:C 0 1 D351R:U 0 2 D352R:C 0 3 D337R:G 0 4 D338R:A 0 5 D339R:G 0 6 D340R:U 0 7 D341R:G 0 [Edges] 0 {D337R:G -> D338R:A: adjacent_5p } 0 1 {D338R:A -> D337R:G: adjacent_3p } 0 2 {D337R:G -> D339R:G: upward } 0 3 {D339R:G -> D337R:G: downward } 0 4 {D337R:G -> D352R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {D352R:C -> D337R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D338R:A -> D339R:G: adjacent_5p } 0 7 {D339R:G -> D338R:A: adjacent_3p } 0 8 {D339R:G -> D340R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {D340R:U -> D339R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {D340R:U -> D341R:G: adjacent_5p upward } 0 11 {D341R:G -> D340R:U: adjacent_3p downward } 0 12 {D340R:U -> D351R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {D351R:U -> D340R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {D340R:U -> D352R:C: outward } 0 15 {D352R:C -> D340R:U: outward } 0 16 {D341R:G -> D350R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {D350R:C -> D341R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {D350R:C -> D351R:U: adjacent_5p upward } 0 19 {D351R:U -> D350R:C: adjacent_3p downward } 0 20 {D351R:U -> D352R:C: adjacent_5p } 0 21 {D352R:C -> D351R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 17 1 19 . 20 . . . 13 . 2 . 21 . 5 . . 15 . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . . 5 . . . 3 7 . 8 . 6 . 12 14 . . 9 . 10 7 16 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C7R:G 0 1 C8R:G 0 2 C9R:U 0 3 C13R:A 0 4 C14R:A 0 5 C15R:U 0 6 C16R:C 0 7 C17R:C 0 [Edges] 0 {C7R:G -> C8R:G: adjacent_5p upward } 0 1 {C8R:G -> C7R:G: adjacent_3p downward } 0 2 {C7R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C17R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C8R:G -> C9R:U: adjacent_5p upward } 0 5 {C9R:U -> C8R:G: adjacent_3p downward } 0 6 {C8R:G -> C16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C16R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C9R:U -> C13R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {C13R:A -> C9R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {C13R:A -> C14R:A: adjacent_5p } 0 11 {C14R:A -> C13R:A: adjacent_3p } 0 12 {C13R:A -> C16R:C: upward } 0 13 {C16R:C -> C13R:A: downward } 0 14 {C14R:A -> C15R:U: adjacent_5p upward } 0 15 {C15R:U -> C14R:A: adjacent_3p downward } 0 16 {C15R:U -> C16R:C: adjacent_5p } 0 17 {C16R:C -> C15R:U: adjacent_3p } 0 18 {C16R:C -> C17R:C: adjacent_5p upward } 0 19 {C17R:C -> C16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D7R:G 0 1 D8R:G 0 2 D9R:U 0 3 D13R:A 0 4 D14R:A 0 5 D15R:U 0 6 D16R:C 0 7 D17R:C 0 [Edges] 0 {D7R:G -> D8R:G: adjacent_5p upward } 0 1 {D8R:G -> D7R:G: adjacent_3p downward } 0 2 {D7R:G -> D17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D17R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D8R:G -> D9R:U: adjacent_5p upward } 0 5 {D9R:U -> D8R:G: adjacent_3p downward } 0 6 {D8R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D16R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D9R:U -> D13R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {D13R:A -> D9R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {D13R:A -> D14R:A: adjacent_5p } 0 11 {D14R:A -> D13R:A: adjacent_3p } 0 12 {D13R:A -> D16R:C: upward } 0 13 {D16R:C -> D13R:A: downward } 0 14 {D14R:A -> D15R:U: adjacent_5p upward } 0 15 {D15R:U -> D14R:A: adjacent_3p downward } 0 16 {D15R:U -> D16R:C: adjacent_5p } 0 17 {D16R:C -> D15R:U: adjacent_3p } 0 18 {D16R:C -> D17R:C: adjacent_5p upward } 0 19 {D17R:C -> D16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B952R:G 0 1 B953R:G 0 2 B954R:U 0 3 B958R:A 0 4 B959R:A 0 5 B960R:U 0 6 B961R:C 0 7 B962R:C 0 [Edges] 0 {B952R:G -> B953R:G: adjacent_5p upward } 0 1 {B953R:G -> B952R:G: adjacent_3p downward } 0 2 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B953R:G -> B954R:U: adjacent_5p upward } 0 5 {B954R:U -> B953R:G: adjacent_3p downward } 0 6 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B954R:U -> B958R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 9 {B958R:A -> B954R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 10 {B958R:A -> B959R:A: adjacent_5p } 0 11 {B959R:A -> B958R:A: adjacent_3p } 0 12 {B958R:A -> B961R:C: upward } 0 13 {B961R:C -> B958R:A: downward } 0 14 {B959R:A -> B960R:U: adjacent_5p upward } 0 15 {B960R:U -> B959R:A: adjacent_3p downward } 0 16 {B960R:U -> B961R:C: adjacent_5p } 0 17 {B961R:C -> B960R:U: adjacent_3p } 0 18 {B961R:C -> B962R:C: adjacent_5p } 0 19 {B962R:C -> B961R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B407R:G 0 1 B408R:G 0 2 B409R:U 0 3 B413R:A 0 4 B414R:U 0 5 B415R:C 0 6 B416R:C 0 7 B417R:C 0 [Edges] 0 {B407R:G -> B408R:G: adjacent_5p upward } 0 1 {B408R:G -> B407R:G: adjacent_3p downward } 0 2 {B407R:G -> B417R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B417R:C -> B407R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B408R:G -> B409R:U: adjacent_5p upward } 0 5 {B409R:U -> B408R:G: adjacent_3p downward } 0 6 {B408R:G -> B416R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B416R:C -> B408R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B409R:U -> B413R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {B413R:A -> B409R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {B413R:A -> B414R:U: adjacent_5p } 0 11 {B414R:U -> B413R:A: adjacent_3p } 0 12 {B413R:A -> B416R:C: upward } 0 13 {B416R:C -> B413R:A: downward } 0 14 {B414R:U -> B415R:C: adjacent_5p upward } 0 15 {B415R:C -> B414R:U: adjacent_3p downward } 0 16 {B415R:C -> B416R:C: adjacent_5p } 0 17 {B416R:C -> B415R:C: adjacent_3p } 0 18 {B416R:C -> B417R:C: adjacent_5p } 0 19 {B417R:C -> B416R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 '2'24R:U 0 1 '2'25R:C 0 2 '2'26R:C 0 3 '2'9R:G 0 4 '2'10R:U 0 5 '2'11R:G 0 6 '2'12R:U 0 7 '2'13R:A 0 [Edges] 0 {'2'9R:G -> '2'10R:U: adjacent_5p } 0 1 {'2'10R:U -> '2'9R:G: adjacent_3p } 0 2 {'2'9R:G -> '2'11R:G: upward } 0 3 {'2'11R:G -> '2'9R:G: downward } 0 4 {'2'9R:G -> '2'26R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'2'26R:C -> '2'9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'2'10R:U -> '2'11R:G: adjacent_5p downward } 0 7 {'2'11R:G -> '2'10R:U: adjacent_3p upward } 0 8 {'2'10R:U -> '2'13R:A: pairing parallel cis XXIII Ww/Hh } 0 9 {'2'13R:A -> '2'10R:U: pairing parallel cis XXIII Hh/Ww } 0 10 {'2'11R:G -> '2'12R:U: adjacent_5p } 0 11 {'2'12R:U -> '2'11R:G: adjacent_3p } 0 12 {'2'11R:G -> '2'13R:A: upward } 0 13 {'2'13R:A -> '2'11R:G: downward } 0 14 {'2'11R:G -> '2'25R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'2'25R:C -> '2'11R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'2'12R:U -> '2'13R:A: adjacent_5p } 0 17 {'2'13R:A -> '2'12R:U: adjacent_3p } 0 18 {'2'13R:A -> '2'24R:U: pairing antiparallel cis XX Ww/Ww } 0 19 {'2'24R:U -> '2'13R:A: pairing antiparallel cis XX Ww/Ww } 0 20 {'2'24R:U -> '2'25R:C: adjacent_5p upward } 0 21 {'2'25R:C -> '2'24R:U: adjacent_3p downward } 0 22 {'2'25R:C -> '2'26R:C: adjacent_5p } 0 23 {'2'26R:C -> '2'25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 20 . . . . . 19 1 21 . 22 . . 15 . . 2 . 23 . 5 . . . . 3 . . 4 . 0 2 . . 4 . . . 1 . 6 . 8 5 . 14 . 3 7 . 10 12 6 . . . . . 11 . 16 7 18 . . . 9 13 17 . MOLECULE: [GraphModel] [Vertices] 0 B7R:G 0 1 B8R:G 0 2 B9R:U 0 3 B13R:A 0 4 B14R:A 0 5 B15R:U 0 6 B16R:C 0 7 B17R:C 0 [Edges] 0 {B7R:G -> B8R:G: adjacent_5p upward } 0 1 {B8R:G -> B7R:G: adjacent_3p downward } 0 2 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B8R:G -> B9R:U: adjacent_5p upward } 0 5 {B9R:U -> B8R:G: adjacent_3p downward } 0 6 {B8R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B9R:U -> B13R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {B13R:A -> B9R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {B13R:A -> B14R:A: adjacent_5p } 0 11 {B14R:A -> B13R:A: adjacent_3p } 0 12 {B13R:A -> B16R:C: upward } 0 13 {B16R:C -> B13R:A: downward } 0 14 {B14R:A -> B15R:U: adjacent_5p upward } 0 15 {B15R:U -> B14R:A: adjacent_3p downward } 0 16 {B15R:U -> B16R:C: adjacent_5p } 0 17 {B16R:C -> B15R:U: adjacent_3p } 0 18 {B16R:C -> B17R:C: adjacent_5p } 0 19 {B17R:C -> B16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:U 0 2 A6R:A 0 3 A36R:U 0 4 A37R:A 0 5 A38R:A 0 6 A39R:G 0 7 A40R:U 0 [Edges] 0 {A4R:A -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A40R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A40R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:U: adjacent_3p } 0 6 {A5R:U -> A37R:A: inward } 0 7 {A37R:A -> A5R:U: inward } 0 8 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {A6R:A -> A36R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {A36R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {A6R:A -> A37R:A: outward } 0 13 {A37R:A -> A6R:A: outward } 0 14 {A36R:U -> A37R:A: adjacent_5p upward } 0 15 {A37R:A -> A36R:U: adjacent_3p downward } 0 16 {A37R:A -> A38R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 17 {A38R:A -> A37R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 18 {A38R:A -> A39R:G: adjacent_5p upward } 0 19 {A39R:G -> A38R:A: adjacent_3p downward } 0 20 {A39R:G -> A40R:U: adjacent_5p upward } 0 21 {A40R:U -> A39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 7 13 15 . 16 . . 5 . . . . 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B47R:A 0 1 B48R:U 0 2 B49R:A 0 3 B79R:U 0 4 B80R:A 0 5 B81R:A 0 6 B82R:G 0 7 B83R:U 0 [Edges] 0 {B47R:A -> B48R:U: adjacent_5p upward } 0 1 {B48R:U -> B47R:A: adjacent_3p downward } 0 2 {B47R:A -> B83R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B83R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B48R:U -> B49R:A: adjacent_5p } 0 5 {B49R:A -> B48R:U: adjacent_3p } 0 6 {B48R:U -> B80R:A: inward } 0 7 {B80R:A -> B48R:U: inward } 0 8 {B48R:U -> B82R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B82R:G -> B48R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B49R:A -> B79R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {B79R:U -> B49R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {B49R:A -> B80R:A: outward } 0 13 {B80R:A -> B49R:A: outward } 0 14 {B79R:U -> B80R:A: adjacent_5p upward } 0 15 {B80R:A -> B79R:U: adjacent_3p downward } 0 16 {B80R:A -> B81R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 17 {B81R:A -> B80R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 18 {B81R:A -> B82R:G: adjacent_5p upward } 0 19 {B82R:G -> B81R:A: adjacent_3p downward } 0 20 {B82R:G -> B83R:U: adjacent_5p upward } 0 21 {B83R:U -> B82R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 7 13 15 . 16 . . 5 . . . . 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:G 0 2 A16R:G 0 3 A29R:G 0 4 A30R:U 0 5 A31R:G 0 6 A32R:A 0 7 A33R:A 0 [Edges] 0 {A14R:U -> A15R:G: adjacent_5p } 0 1 {A15R:G -> A14R:U: adjacent_3p } 0 2 {A14R:U -> A33R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A33R:A -> A14R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A15R:G -> A16R:G: adjacent_5p } 0 5 {A16R:G -> A15R:G: adjacent_3p } 0 6 {A15R:G -> A32R:A: pairing antiparallel cis Ww/Ss } 0 7 {A32R:A -> A15R:G: pairing antiparallel cis Ss/Ww } 0 8 {A15R:G -> A33R:A: outward } 0 9 {A33R:A -> A15R:G: outward } 0 10 {A16R:G -> A29R:G: pairing parallel cis one_hbond Ww/Hw } 0 11 {A29R:G -> A16R:G: pairing parallel cis one_hbond Hw/Ww } 0 12 {A29R:G -> A30R:U: adjacent_5p } 0 13 {A30R:U -> A29R:G: adjacent_3p } 0 14 {A29R:G -> A31R:G: outward } 0 15 {A31R:G -> A29R:G: outward } 0 16 {A30R:U -> A31R:G: adjacent_5p } 0 17 {A31R:G -> A30R:U: adjacent_3p } 0 18 {A31R:G -> A32R:A: adjacent_5p upward } 0 19 {A32R:A -> A31R:G: adjacent_3p downward } 0 20 {A32R:A -> A33R:A: adjacent_5p } 0 21 {A33R:A -> A32R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 14 . . 4 . . . 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:G 0 2 A17R:G 0 3 A28R:U 0 4 A29R:G 0 5 A30R:U 0 6 A31R:G 0 7 A32R:A 0 [Edges] 0 {A15R:G -> A16R:G: adjacent_5p } 0 1 {A16R:G -> A15R:G: adjacent_3p } 0 2 {A15R:G -> A32R:A: pairing antiparallel cis Ww/Ss } 0 3 {A32R:A -> A15R:G: pairing antiparallel cis Ss/Ww } 0 4 {A16R:G -> A17R:G: adjacent_5p upward } 0 5 {A17R:G -> A16R:G: adjacent_3p downward } 0 6 {A16R:G -> A29R:G: pairing parallel cis one_hbond Ww/Hw } 0 7 {A29R:G -> A16R:G: pairing parallel cis one_hbond Hw/Ww } 0 8 {A17R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A28R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A28R:U -> A29R:G: adjacent_5p } 0 11 {A29R:G -> A28R:U: adjacent_3p } 0 12 {A29R:G -> A30R:U: adjacent_5p } 0 13 {A30R:U -> A29R:G: adjacent_3p } 0 14 {A29R:G -> A31R:G: outward } 0 15 {A31R:G -> A29R:G: outward } 0 16 {A30R:U -> A31R:G: adjacent_5p } 0 17 {A31R:G -> A30R:U: adjacent_3p } 0 18 {A31R:G -> A32R:A: adjacent_5p upward } 0 19 {A32R:A -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 14 . 5 . . . . 13 . 16 . 6 . . . . 15 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B52R:G 0 1 B53R:G 0 2 B54R:U 0 3 B58R:A 0 4 B59R:G 0 5 B60R:U 0 6 B61R:C 0 7 B62R:C 0 [Edges] 0 {B52R:G -> B53R:G: adjacent_5p upward } 0 1 {B53R:G -> B52R:G: adjacent_3p downward } 0 2 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B53R:G -> B54R:U: adjacent_5p upward } 0 5 {B54R:U -> B53R:G: adjacent_3p downward } 0 6 {B53R:G -> B61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B61R:C -> B53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B54R:U -> B58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {B58R:A -> B54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {B58R:A -> B59R:G: adjacent_5p } 0 11 {B59R:G -> B58R:A: adjacent_3p } 0 12 {B58R:A -> B61R:C: upward } 0 13 {B61R:C -> B58R:A: downward } 0 14 {B59R:G -> B60R:U: adjacent_5p upward } 0 15 {B60R:U -> B59R:G: adjacent_3p downward } 0 16 {B60R:U -> B61R:C: adjacent_5p } 0 17 {B61R:C -> B60R:U: adjacent_3p } 0 18 {B61R:C -> B62R:C: adjacent_5p } 0 19 {B62R:C -> B61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E52R:G 0 1 E53R:G 0 2 E54R:U 0 3 E58R:A 0 4 E59R:G 0 5 E60R:U 0 6 E61R:C 0 7 E62R:C 0 [Edges] 0 {E52R:G -> E53R:G: adjacent_5p upward } 0 1 {E53R:G -> E52R:G: adjacent_3p downward } 0 2 {E52R:G -> E62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E62R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E53R:G -> E54R:U: adjacent_5p upward } 0 5 {E54R:U -> E53R:G: adjacent_3p downward } 0 6 {E53R:G -> E61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E61R:C -> E53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E54R:U -> E58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {E58R:A -> E54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {E58R:A -> E59R:G: adjacent_5p } 0 11 {E59R:G -> E58R:A: adjacent_3p } 0 12 {E58R:A -> E61R:C: upward } 0 13 {E61R:C -> E58R:A: downward } 0 14 {E59R:G -> E60R:U: adjacent_5p } 0 15 {E60R:U -> E59R:G: adjacent_3p } 0 16 {E60R:U -> E61R:C: adjacent_5p } 0 17 {E61R:C -> E60R:U: adjacent_3p } 0 18 {E61R:C -> E62R:C: adjacent_5p } 0 19 {E62R:C -> E61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C52R:G 0 1 C53R:G 0 2 C54R:U 0 3 C58R:A 0 4 C59R:G 0 5 C60R:U 0 6 C61R:C 0 7 C62R:C 0 [Edges] 0 {C52R:G -> C53R:G: adjacent_5p upward } 0 1 {C53R:G -> C52R:G: adjacent_3p downward } 0 2 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C53R:G -> C54R:U: adjacent_5p upward } 0 5 {C54R:U -> C53R:G: adjacent_3p downward } 0 6 {C53R:G -> C61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C61R:C -> C53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C53R:G -> C62R:C: outward } 0 9 {C62R:C -> C53R:G: outward } 0 10 {C54R:U -> C58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {C58R:A -> C54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {C58R:A -> C59R:G: adjacent_5p } 0 13 {C59R:G -> C58R:A: adjacent_3p } 0 14 {C58R:A -> C61R:C: upward } 0 15 {C61R:C -> C58R:A: downward } 0 16 {C59R:G -> C60R:U: adjacent_5p outward } 0 17 {C60R:U -> C59R:G: adjacent_3p outward } 0 18 {C60R:U -> C61R:C: adjacent_5p } 0 19 {C61R:C -> C60R:U: adjacent_3p } 0 20 {C61R:C -> C62R:C: adjacent_5p } 0 21 {C62R:C -> C61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . 14 . 4 . . . 13 . 16 . . 5 . . . . 17 . 18 . 6 . 7 . 15 . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D52R:G 0 1 D53R:G 0 2 D54R:U 0 3 D58R:A 0 4 D59R:G 0 5 D60R:U 0 6 D61R:C 0 7 D62R:C 0 [Edges] 0 {D52R:G -> D53R:G: adjacent_5p upward } 0 1 {D53R:G -> D52R:G: adjacent_3p downward } 0 2 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D53R:G -> D54R:U: adjacent_5p upward } 0 5 {D54R:U -> D53R:G: adjacent_3p downward } 0 6 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D54R:U -> D58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {D58R:A -> D54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {D58R:A -> D59R:G: adjacent_5p } 0 11 {D59R:G -> D58R:A: adjacent_3p } 0 12 {D58R:A -> D61R:C: upward } 0 13 {D61R:C -> D58R:A: downward } 0 14 {D59R:G -> D60R:U: adjacent_5p outward } 0 15 {D60R:U -> D59R:G: adjacent_3p outward } 0 16 {D60R:U -> D61R:C: adjacent_5p } 0 17 {D61R:C -> D60R:U: adjacent_3p } 0 18 {D61R:C -> D62R:C: adjacent_5p } 0 19 {D62R:C -> D61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B4R:U 0 1 B5R:C 0 2 B6R:G 0 3 A9R:G 0 4 A10R:G 0 5 A11R:C 0 6 A12R:G 0 7 A13R:A 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p } 0 5 {A11R:C -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A12R:G: pairing parallel cis one_hbond 113 Ws/Hw } 0 7 {A12R:G -> A10R:G: pairing parallel cis one_hbond 113 Hw/Ws } 0 8 {A10R:G -> B4R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 9 {B4R:U -> A10R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 10 {A11R:C -> A12R:G: adjacent_5p } 0 11 {A12R:G -> A11R:C: adjacent_3p } 0 12 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 13 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 14 {A12R:G -> A13R:A: adjacent_5p upward } 0 15 {A13R:A -> A12R:G: adjacent_3p downward } 0 16 {A12R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A12R:G -> B6R:G: outward } 0 19 {B6R:G -> A12R:G: outward } 0 20 {A13R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 21 {B4R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 22 {B4R:U -> B5R:C: adjacent_5p upward } 0 23 {B5R:C -> B4R:U: adjacent_3p downward } 0 24 {B5R:C -> B6R:G: adjacent_5p upward } 0 25 {B6R:G -> B5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 22 . . 9 . . 21 1 23 . 24 . . . 17 . 2 . 25 . 3 . 13 19 . 3 . . 2 . 0 . . . 4 8 . . 1 . 4 6 . 5 . . 12 . 5 . 10 . 6 . 16 18 . 7 11 . 14 7 20 . . . . . 15 . [GraphModel] [Vertices] 0 B5R:C 0 1 B6R:G 0 2 B7R:G 0 3 A8R:A 0 4 A9R:G 0 5 A10R:G 0 6 A11R:C 0 7 A12R:G 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B7R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p } 0 5 {A10R:G -> A9R:G: adjacent_3p } 0 6 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {A10R:G -> A11R:C: adjacent_5p } 0 9 {A11R:C -> A10R:G: adjacent_3p } 0 10 {A10R:G -> A12R:G: pairing parallel cis one_hbond 113 Ws/Hw } 0 11 {A12R:G -> A10R:G: pairing parallel cis one_hbond 113 Hw/Ws } 0 12 {A11R:C -> A12R:G: adjacent_5p } 0 13 {A12R:G -> A11R:C: adjacent_3p } 0 14 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 15 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 16 {A12R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A12R:G -> B6R:G: outward } 0 19 {B6R:G -> A12R:G: outward } 0 20 {B5R:C -> B6R:G: adjacent_5p upward } 0 21 {B6R:G -> B5R:C: adjacent_3p downward } 0 22 {B6R:G -> B7R:G: adjacent_5p upward } 0 23 {B7R:G -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 20 . . . . . 17 1 21 . 22 . 7 . 15 19 2 . 23 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 10 6 . 14 . . . 9 . 12 7 16 18 . . . 11 13 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:G 0 2 B8R:C 0 3 A7R:G 0 4 A8R:A 0 5 A9R:G 0 6 A10R:G 0 7 A11R:C 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B8R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B7R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p } 0 9 {A10R:G -> A9R:G: adjacent_3p } 0 10 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 11 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 12 {A10R:G -> A11R:C: adjacent_5p } 0 13 {A11R:C -> A10R:G: adjacent_3p } 0 14 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 15 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 16 {B6R:G -> B7R:G: adjacent_5p upward } 0 17 {B7R:G -> B6R:G: adjacent_3p downward } 0 18 {B7R:G -> B8R:C: adjacent_5p upward } 0 19 {B8R:C -> B7R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . 11 . 15 1 17 . 18 . 7 . . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 10 . . . 5 . 8 . 6 . . . . . 9 . 12 7 14 . . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:G 0 2 A7R:G 0 3 B31R:A 0 4 B32R:G 0 5 B33R:G 0 6 B34R:C 0 7 B35R:G 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B35R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B34R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> B35R:G: outward } 0 9 {B35R:G -> A6R:G: outward } 0 10 {A7R:G -> B31R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B31R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {B31R:A -> B32R:G: adjacent_5p upward } 0 13 {B32R:G -> B31R:A: adjacent_3p downward } 0 14 {B32R:G -> B33R:G: adjacent_5p } 0 15 {B33R:G -> B32R:G: adjacent_3p } 0 16 {B33R:G -> B34R:C: adjacent_5p } 0 17 {B34R:C -> B33R:G: adjacent_3p } 0 18 {B34R:C -> B35R:G: adjacent_5p upward } 0 19 {B35R:G -> B34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:C 0 3 B30R:G 0 4 B31R:A 0 5 B32R:G 0 6 B33R:G 0 7 B34R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B34R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B31R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B31R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A8R:C -> B30R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B30R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B30R:G -> B31R:A: adjacent_5p upward } 0 11 {B31R:A -> B30R:G: adjacent_3p downward } 0 12 {B31R:A -> B32R:G: adjacent_5p upward } 0 13 {B32R:G -> B31R:A: adjacent_3p downward } 0 14 {B32R:G -> B33R:G: adjacent_5p } 0 15 {B33R:G -> B32R:G: adjacent_3p } 0 16 {B33R:G -> B34R:C: adjacent_5p } 0 17 {B34R:C -> B33R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . 7 . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B5R:C 0 1 B6R:G 0 2 B7R:G 0 3 A31R:A 0 4 A32R:G 0 5 A33R:G 0 6 A34R:C 0 7 A35R:G 0 [Edges] 0 {A31R:A -> A32R:G: adjacent_5p upward } 0 1 {A32R:G -> A31R:A: adjacent_3p downward } 0 2 {A31R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B7R:G -> A31R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A32R:G -> A33R:G: adjacent_5p } 0 5 {A33R:G -> A32R:G: adjacent_3p } 0 6 {A33R:G -> A34R:C: adjacent_5p } 0 7 {A34R:C -> A33R:G: adjacent_3p } 0 8 {A34R:C -> A35R:G: adjacent_5p upward } 0 9 {A35R:G -> A34R:C: adjacent_3p downward } 0 10 {A34R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B6R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A35R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B5R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A35R:G -> B6R:G: outward } 0 15 {B6R:G -> A35R:G: outward } 0 16 {B5R:C -> B6R:G: adjacent_5p upward } 0 17 {B6R:G -> B5R:C: adjacent_3p downward } 0 18 {B6R:G -> B7R:G: adjacent_5p upward } 0 19 {B7R:G -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . . . 11 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 . . . 7 . 8 7 12 14 . . . . 9 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:G 0 2 B8R:C 0 3 A30R:G 0 4 A31R:A 0 5 A32R:G 0 6 A33R:G 0 7 A34R:C 0 [Edges] 0 {A30R:G -> A31R:A: adjacent_5p upward } 0 1 {A31R:A -> A30R:G: adjacent_3p downward } 0 2 {A30R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B8R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A31R:A -> A32R:G: adjacent_5p upward } 0 5 {A32R:G -> A31R:A: adjacent_3p downward } 0 6 {A31R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B7R:G -> A31R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A32R:G -> A33R:G: adjacent_5p } 0 9 {A33R:G -> A32R:G: adjacent_3p } 0 10 {A33R:G -> A34R:C: adjacent_5p } 0 11 {A34R:C -> A33R:G: adjacent_3p } 0 12 {A34R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B6R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:G -> B7R:G: adjacent_5p upward } 0 15 {B7R:G -> B6R:G: adjacent_3p downward } 0 16 {B7R:G -> B8R:C: adjacent_5p upward } 0 17 {B8R:C -> B7R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 14 . . . . . 13 1 15 . 16 . 7 . . . 2 . 17 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:U 0 2 A10R:G 0 3 A23R:C 0 4 A24R:A 0 5 A25R:A 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A8R:G -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p } 0 5 {A10R:G -> A9R:U: adjacent_3p } 0 6 {A10R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A23R:C -> A24R:A: adjacent_5p upward } 0 9 {A24R:A -> A23R:C: adjacent_3p downward } 0 10 {A24R:A -> A25R:A: adjacent_5p } 0 11 {A25R:A -> A24R:A: adjacent_3p } 0 12 {A25R:A -> A26R:G: adjacent_5p } 0 13 {A26R:G -> A25R:A: adjacent_3p } 0 14 {A26R:G -> A27R:C: adjacent_5p } 0 15 {A27R:C -> A26R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 R52R:G 0 1 R53R:G 0 2 R54R:U 0 3 R58R:A 0 4 R59R:G 0 5 R60R:C 0 6 R61R:C 0 7 R62R:C 0 [Edges] 0 {R52R:G -> R53R:G: adjacent_5p upward } 0 1 {R53R:G -> R52R:G: adjacent_3p downward } 0 2 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R53R:G -> R54R:U: adjacent_5p upward } 0 5 {R54R:U -> R53R:G: adjacent_3p downward } 0 6 {R53R:G -> R61R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R61R:C -> R53R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R54R:U -> R58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {R58R:A -> R54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {R58R:A -> R59R:G: adjacent_5p } 0 11 {R59R:G -> R58R:A: adjacent_3p } 0 12 {R58R:A -> R61R:C: upward } 0 13 {R61R:C -> R58R:A: downward } 0 14 {R59R:G -> R60R:C: adjacent_5p upward } 0 15 {R60R:C -> R59R:G: adjacent_3p downward } 0 16 {R60R:C -> R61R:C: adjacent_5p } 0 17 {R61R:C -> R60R:C: adjacent_3p } 0 18 {R61R:C -> R62R:C: adjacent_5p } 0 19 {R62R:C -> R61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . 12 . 4 . . . 11 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . 13 . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:G 0 3 B64R:A 0 4 B65R:G 0 5 B66R:G 0 6 B67R:C 0 7 B68R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> B68R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B68R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B66R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 7 {B66R:G -> A4R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 8 {A4R:G -> B67R:C: pairing antiparallel cis Ww/Ww } 0 9 {B67R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 10 {A5R:G -> B64R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B64R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {B64R:A -> B65R:G: adjacent_5p } 0 13 {B65R:G -> B64R:A: adjacent_3p } 0 14 {B65R:G -> B66R:G: adjacent_5p } 0 15 {B66R:G -> B65R:G: adjacent_3p } 0 16 {B66R:G -> B67R:C: adjacent_5p } 0 17 {B67R:C -> B66R:G: adjacent_3p } 0 18 {B67R:C -> B68R:G: adjacent_5p } 0 19 {B68R:G -> B67R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . 7 . . 15 . 16 . 6 . 9 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:C 0 3 B63R:G 0 4 B64R:A 0 5 B65R:G 0 6 B66R:G 0 7 B67R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B66R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 3 {B66R:G -> A4R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 4 {A4R:G -> B67R:C: pairing antiparallel cis Ww/Ww } 0 5 {B67R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 6 {A5R:G -> A6R:C: adjacent_5p upward } 0 7 {A6R:C -> A5R:G: adjacent_3p downward } 0 8 {A5R:G -> B64R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {B64R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A6R:C -> B63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B63R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B63R:G -> B64R:A: adjacent_5p upward } 0 13 {B64R:A -> B63R:G: adjacent_3p downward } 0 14 {B64R:A -> B65R:G: adjacent_5p } 0 15 {B65R:G -> B64R:A: adjacent_3p } 0 16 {B65R:G -> B66R:G: adjacent_5p } 0 17 {B66R:G -> B65R:G: adjacent_3p } 0 18 {B66R:G -> B67R:C: adjacent_5p } 0 19 {B67R:C -> B66R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . 8 . . . 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . 9 . 13 . 14 . . 5 . . . . 15 . 16 . 6 3 . . . . 17 . 18 7 5 . . . . . 19 . [GraphModel] [Vertices] 0 B38R:C 0 1 B39R:G 0 2 B40R:G 0 3 A29R:A 0 4 A30R:G 0 5 A31R:G 0 6 A32R:C 0 7 A33R:G 0 [Edges] 0 {A29R:A -> A30R:G: adjacent_5p } 0 1 {A30R:G -> A29R:A: adjacent_3p } 0 2 {A29R:A -> B40R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B40R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A30R:G -> A31R:G: adjacent_5p } 0 5 {A31R:G -> A30R:G: adjacent_3p } 0 6 {A31R:G -> A32R:C: adjacent_5p } 0 7 {A32R:C -> A31R:G: adjacent_3p } 0 8 {A31R:G -> B39R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 9 {B39R:G -> A31R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 10 {A32R:C -> A33R:G: adjacent_5p } 0 11 {A33R:G -> A32R:C: adjacent_3p } 0 12 {A32R:C -> B39R:G: pairing antiparallel cis Ww/Ww } 0 13 {B39R:G -> A32R:C: pairing antiparallel cis Ww/Ww } 0 14 {A33R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B38R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B38R:C -> B39R:G: adjacent_5p } 0 17 {B39R:G -> B38R:C: adjacent_3p } 0 18 {B39R:G -> B40R:G: adjacent_5p upward } 0 19 {B40R:G -> B39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . 9 13 . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . 8 . . 5 . 6 . 6 . 12 . . . 7 . 10 7 14 . . . . . 11 . [GraphModel] [Vertices] 0 B39R:G 0 1 B40R:G 0 2 B41R:C 0 3 A28R:G 0 4 A29R:A 0 5 A30R:G 0 6 A31R:G 0 7 A32R:C 0 [Edges] 0 {A28R:G -> A29R:A: adjacent_5p upward } 0 1 {A29R:A -> A28R:G: adjacent_3p downward } 0 2 {A28R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B41R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A29R:A -> A30R:G: adjacent_5p } 0 5 {A30R:G -> A29R:A: adjacent_3p } 0 6 {A29R:A -> B40R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B40R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A30R:G -> A31R:G: adjacent_5p } 0 9 {A31R:G -> A30R:G: adjacent_3p } 0 10 {A31R:G -> A32R:C: adjacent_5p } 0 11 {A32R:C -> A31R:G: adjacent_3p } 0 12 {A31R:G -> B39R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 13 {B39R:G -> A31R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 14 {A32R:C -> B39R:G: pairing antiparallel cis Ww/Ww } 0 15 {B39R:G -> A32R:C: pairing antiparallel cis Ww/Ww } 0 16 {B39R:G -> B40R:G: adjacent_5p upward } 0 17 {B40R:G -> B39R:G: adjacent_3p downward } 0 18 {B40R:G -> B41R:C: adjacent_5p upward } 0 19 {B41R:C -> B40R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . 13 15 1 17 . 18 . 7 . . . 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 12 . . . . 9 . 10 7 14 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 44R:A 0 1 45R:G 0 2 46R:A 0 3 22R:G 0 4 23R:A 0 5 24R:A 0 6 25R:U 0 7 26R:G 0 [Edges] 0 {22R:G -> 23R:A: adjacent_5p upward } 0 1 {23R:A -> 22R:G: adjacent_3p downward } 0 2 {22R:G -> 46R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {46R:A -> 22R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {23R:A -> 24R:A: adjacent_5p upward } 0 5 {24R:A -> 23R:A: adjacent_3p downward } 0 6 {24R:A -> 25R:U: adjacent_5p upward } 0 7 {25R:U -> 24R:A: adjacent_3p downward } 0 8 {25R:U -> 26R:G: adjacent_5p upward } 0 9 {26R:G -> 25R:U: adjacent_3p downward } 0 10 {26R:G -> 44R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {44R:A -> 26R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {44R:A -> 45R:G: adjacent_5p upward } 0 13 {45R:G -> 44R:A: adjacent_3p downward } 0 14 {45R:G -> 46R:A: adjacent_5p } 0 15 {46R:A -> 45R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B43R:G 0 1 B44R:G 0 2 B45R:A 0 3 A23R:C 0 4 A24R:G 0 5 A25R:A 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A23R:C -> A24R:G: adjacent_5p } 0 1 {A24R:G -> A23R:C: adjacent_3p } 0 2 {A23R:C -> B45R:A: pairing antiparallel trans one_hbond 78 Bs/Wh } 0 3 {B45R:A -> A23R:C: pairing antiparallel trans one_hbond 78 Wh/Bs } 0 4 {A24R:G -> A25R:A: adjacent_5p upward } 0 5 {A25R:A -> A24R:G: adjacent_3p downward } 0 6 {A25R:A -> A26R:G: adjacent_5p inward } 0 7 {A26R:G -> A25R:A: adjacent_3p inward } 0 8 {A26R:G -> A27R:C: adjacent_5p } 0 9 {A27R:C -> A26R:G: adjacent_3p } 0 10 {A27R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B43R:G -> B44R:G: adjacent_5p upward } 0 13 {B44R:G -> B43R:G: adjacent_3p downward } 0 14 {B44R:G -> B45R:A: adjacent_5p upward } 0 15 {B45R:A -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . [GraphModel] [Vertices] 0 D143R:G 0 1 D144R:G 0 2 D145R:A 0 3 C123R:C 0 4 C124R:G 0 5 C125R:A 0 6 C126R:G 0 7 C127R:C 0 [Edges] 0 {C123R:C -> C124R:G: adjacent_5p } 0 1 {C124R:G -> C123R:C: adjacent_3p } 0 2 {C123R:C -> D145R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {D145R:A -> C123R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {C124R:G -> C125R:A: adjacent_5p } 0 5 {C125R:A -> C124R:G: adjacent_3p } 0 6 {C125R:A -> C126R:G: adjacent_5p inward } 0 7 {C126R:G -> C125R:A: adjacent_3p inward } 0 8 {C126R:G -> C127R:C: adjacent_5p } 0 9 {C127R:C -> C126R:G: adjacent_3p } 0 10 {C127R:C -> D143R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D143R:G -> C127R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D143R:G -> D144R:G: adjacent_5p upward } 0 13 {D144R:G -> D143R:G: adjacent_3p downward } 0 14 {D144R:G -> D145R:A: adjacent_5p upward } 0 15 {D145R:A -> D144R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 12 . . . . . 11 1 13 . 14 . . . . . 2 . 15 . 3 . . . . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . . . . . 7 . 8 7 10 . . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B19R:U 0 1 B20R:C 0 2 B21R:G 0 3 B7R:U 0 4 B8R:U 0 5 B9R:G 0 6 B10R:G 0 7 B11R:A 0 [Edges] 0 {B7R:U -> B8R:U: adjacent_5p } 0 1 {B8R:U -> B7R:U: adjacent_3p } 0 2 {B7R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B21R:G -> B7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B8R:U -> B9R:G: adjacent_5p } 0 5 {B9R:G -> B8R:U: adjacent_3p } 0 6 {B9R:G -> B10R:G: adjacent_5p } 0 7 {B10R:G -> B9R:G: adjacent_3p } 0 8 {B10R:G -> B11R:A: adjacent_5p upward } 0 9 {B11R:A -> B10R:G: adjacent_3p downward } 0 10 {B10R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B10R:G -> B21R:G: outward } 0 13 {B21R:G -> B10R:G: outward } 0 14 {B11R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B19R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B19R:U -> B20R:C: adjacent_5p upward } 0 17 {B20R:C -> B19R:U: adjacent_3p downward } 0 18 {B20R:C -> B21R:G: adjacent_5p upward } 0 19 {B21R:G -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 11 . 2 . 19 . 3 . . 13 . 3 . . 2 . 0 . . . 4 . . . 1 . 4 . . 5 . . . . 5 . 6 . 6 . 10 12 . . 7 . 8 7 14 . . . . . 9 . [GraphModel] [Vertices] 0 B20R:C 0 1 B21R:G 0 2 B22R:G 0 3 B6R:C 0 4 B7R:U 0 5 B8R:U 0 6 B9R:G 0 7 B10R:G 0 [Edges] 0 {B6R:C -> B7R:U: adjacent_5p upward } 0 1 {B7R:U -> B6R:C: adjacent_3p downward } 0 2 {B6R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:U -> B8R:U: adjacent_5p } 0 5 {B8R:U -> B7R:U: adjacent_3p } 0 6 {B7R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B21R:G -> B7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B8R:U -> B9R:G: adjacent_5p } 0 9 {B9R:G -> B8R:U: adjacent_3p } 0 10 {B9R:G -> B10R:G: adjacent_5p } 0 11 {B10R:G -> B9R:G: adjacent_3p } 0 12 {B10R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B10R:G -> B21R:G: outward } 0 15 {B21R:G -> B10R:G: outward } 0 16 {B20R:C -> B21R:G: adjacent_5p upward } 0 17 {B21R:G -> B20R:C: adjacent_3p downward } 0 18 {B21R:G -> B22R:G: adjacent_5p upward } 0 19 {B22R:G -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . 7 . . 15 2 . 19 . 3 . . . . 3 . . 2 . 0 . . . 4 . 6 . 1 . 4 . . 5 . . . . 5 . 8 . 6 . . . . . 9 . 10 7 12 14 . . . . 11 .