MOLECULE: [GraphModel] [Vertices] 0 15R:C 0 1 16R:U 0 2 17R:A 0 3 5R:U 0 4 6R:A 0 5 7R:A 0 6 8R:G 0 [Edges] 0 {5R:U -> 6R:A: adjacent_5p } 0 1 {6R:A -> 5R:U: adjacent_3p } 0 2 {5R:U -> 17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {17R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {6R:A -> 7R:A: adjacent_5p upward } 0 5 {7R:A -> 6R:A: adjacent_3p downward } 0 6 {6R:A -> 17R:A: outward } 0 7 {17R:A -> 6R:A: outward } 0 8 {7R:A -> 8R:G: adjacent_5p upward } 0 9 {8R:G -> 7R:A: adjacent_3p downward } 0 10 {8R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {15R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {15R:C -> 16R:U: adjacent_5p } 0 13 {16R:U -> 15R:C: adjacent_3p } 0 14 {16R:U -> 17R:A: adjacent_5p } 0 15 {17R:A -> 16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . . . 2 . 15 . 3 7 . . 3 . . 2 . 0 . . 4 . . 6 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 4R:A 0 1 5R:G 0 2 6R:C 0 3 11R:C 0 4 12R:U 0 5 13R:C 0 6 14R:U 0 [Edges] 0 {4R:A -> 5R:G: adjacent_5p upward } 0 1 {5R:G -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {14R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:G -> 6R:C: adjacent_5p } 0 5 {6R:C -> 5R:G: adjacent_3p } 0 6 {5R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {13R:C -> 5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:C -> 11R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 9 {11R:C -> 6R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 10 {11R:C -> 12R:U: adjacent_5p upward } 0 11 {12R:U -> 11R:C: adjacent_3p downward } 0 12 {12R:U -> 13R:C: adjacent_5p } 0 13 {13R:C -> 12R:U: adjacent_3p } 0 14 {13R:C -> 14R:U: adjacent_5p upward } 0 15 {14R:U -> 13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 R16R:C 0 1 R18R:G 0 2 R19R:G 0 3 R56R:C 0 4 R57R:G 0 5 R58R:A 0 6 R59R:C 0 [Edges] 0 {R16R:C -> R18R:G: adjacent_5p } 0 1 {R18R:G -> R16R:C: adjacent_3p } 0 2 {R16R:C -> R59R:C: pairing parallel trans XV Ww/Ww } 0 3 {R59R:C -> R16R:C: pairing parallel trans XV Ww/Ww } 0 4 {R18R:G -> R19R:G: adjacent_5p } 0 5 {R19R:G -> R18R:G: adjacent_3p } 0 6 {R18R:G -> R57R:G: inward } 0 7 {R57R:G -> R18R:G: inward } 0 8 {R18R:G -> R58R:A: outward } 0 9 {R58R:A -> R18R:G: outward } 0 10 {R19R:G -> R56R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R56R:C -> R19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R19R:G -> R57R:G: outward } 0 13 {R57R:G -> R19R:G: outward } 0 14 {R56R:C -> R57R:G: adjacent_5p upward } 0 15 {R57R:G -> R56R:C: adjacent_3p downward } 0 16 {R57R:G -> R58R:A: adjacent_5p } 0 17 {R58R:A -> R57R:G: adjacent_3p } 0 18 {R58R:A -> R59R:C: adjacent_5p } 0 19 {R59R:C -> R58R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 12 . . 3 . . 11 . 14 . . 4 . 7 13 15 . 16 . 5 . 9 . . 17 . 18 6 3 . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:A 0 2 A9R:A 0 3 A29R:A 0 4 A30R:U 0 5 A31R:U 0 6 A32R:A 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p } 0 1 {A8R:A -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A32R:A: pairing antiparallel trans one_hbond 63 Ss/Hw } 0 3 {A32R:A -> A7R:G: pairing antiparallel trans one_hbond 63 Hw/Ss } 0 4 {A8R:A -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:A: adjacent_3p downward } 0 6 {A9R:A -> A29R:A: pairing parallel trans one_hbond Hw/Hh } 0 7 {A29R:A -> A9R:A: pairing parallel trans one_hbond Hh/Hw } 0 8 {A29R:A -> A30R:U: adjacent_5p } 0 9 {A30R:U -> A29R:A: adjacent_3p } 0 10 {A30R:U -> A31R:U: adjacent_5p } 0 11 {A31R:U -> A30R:U: adjacent_3p } 0 12 {A31R:U -> A32R:A: adjacent_5p } 0 13 {A32R:A -> A31R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:A 0 2 A11R:C 0 3 A26R:U 0 4 A27R:A 0 5 A28R:U 0 6 A29R:A 0 [Edges] 0 {A9R:A -> A10R:A: adjacent_5p } 0 1 {A10R:A -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A29R:A: pairing parallel trans one_hbond Hw/Hh } 0 3 {A29R:A -> A9R:A: pairing parallel trans one_hbond Hh/Hw } 0 4 {A10R:A -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> A27R:A: pairing antiparallel trans one_hbond 40 Bh/Ss } 0 7 {A27R:A -> A10R:A: pairing antiparallel trans one_hbond 40 Ss/Bh } 0 8 {A11R:C -> A26R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 9 {A26R:U -> A11R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 10 {A26R:U -> A27R:A: adjacent_5p upward } 0 11 {A27R:A -> A26R:U: adjacent_3p downward } 0 12 {A27R:A -> A28R:U: adjacent_5p upward } 0 13 {A28R:U -> A27R:A: adjacent_3p downward } 0 14 {A28R:U -> A29R:A: adjacent_5p } 0 15 {A29R:A -> A28R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 7R:C 0 1 8R:U 0 2 9R:G 0 3 16R:U 0 4 17R:A 0 5 18R:A 0 6 19R:G 0 [Edges] 0 {7R:C -> 8R:U: adjacent_5p } 0 1 {8R:U -> 7R:C: adjacent_3p } 0 2 {7R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {19R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {8R:U -> 9R:G: adjacent_5p upward } 0 5 {9R:G -> 8R:U: adjacent_3p downward } 0 6 {8R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {18R:A -> 8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {9R:G -> 16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {16R:U -> 9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {16R:U -> 17R:A: adjacent_5p upward } 0 11 {17R:A -> 16R:U: adjacent_3p downward } 0 12 {17R:A -> 18R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {18R:A -> 17R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {18R:A -> 19R:G: adjacent_5p upward } 0 15 {19R:G -> 18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 8R:U 0 1 9R:G 0 2 10R:C 0 3 15R:G 0 4 16R:U 0 5 17R:A 0 6 18R:A 0 [Edges] 0 {8R:U -> 9R:G: adjacent_5p upward } 0 1 {9R:G -> 8R:U: adjacent_3p downward } 0 2 {8R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {18R:A -> 8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {9R:G -> 10R:C: adjacent_5p upward } 0 5 {10R:C -> 9R:G: adjacent_3p downward } 0 6 {9R:G -> 16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {16R:U -> 9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {10R:C -> 15R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 9 {15R:G -> 10R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 10 {15R:G -> 16R:U: adjacent_5p upward } 0 11 {16R:U -> 15R:G: adjacent_3p downward } 0 12 {16R:U -> 17R:A: adjacent_5p upward } 0 13 {17R:A -> 16R:U: adjacent_3p downward } 0 14 {17R:A -> 18R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {18R:A -> 17R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 7R:G 0 1 8R:C 0 2 9R:G 0 3 11R:A 0 4 12R:G 0 5 13R:G 0 6 14R:C 0 [Edges] 0 {7R:G -> 8R:C: adjacent_5p upward } 0 1 {8R:C -> 7R:G: adjacent_3p downward } 0 2 {7R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {14R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {8R:C -> 9R:G: adjacent_5p } 0 5 {9R:G -> 8R:C: adjacent_3p } 0 6 {8R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {13R:G -> 8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {9R:G -> 11R:A: pairing parallel cis one_hbond Wh/Hw } 0 9 {11R:A -> 9R:G: pairing parallel cis one_hbond Hw/Wh } 0 10 {11R:A -> 12R:G: adjacent_5p } 0 11 {12R:G -> 11R:A: adjacent_3p } 0 12 {12R:G -> 13R:G: adjacent_5p } 0 13 {13R:G -> 12R:G: adjacent_3p } 0 14 {13R:G -> 14R:C: adjacent_5p upward } 0 15 {14R:C -> 13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A17R:U 0 1 A18R:C 0 2 A19R:U 0 3 A5R:A 0 4 A6R:C 0 5 A7R:G 0 6 A8R:G 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:A: adjacent_3p } 0 2 {A5R:A -> A7R:G: upward } 0 3 {A7R:G -> A5R:A: downward } 0 4 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A6R:C -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:C: adjacent_3p } 0 8 {A7R:G -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A17R:U -> A18R:C: adjacent_5p } 0 15 {A18R:C -> A17R:U: adjacent_3p } 0 16 {A18R:C -> A19R:U: adjacent_5p } 0 17 {A19R:U -> A18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:U 0 2 A20R:C 0 3 A4R:G 0 4 A5R:A 0 5 A6R:C 0 6 A7R:G 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:A: adjacent_3p } 0 6 {A5R:A -> A7R:G: upward } 0 7 {A7R:G -> A5R:A: downward } 0 8 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A6R:C -> A7R:G: adjacent_5p } 0 11 {A7R:G -> A6R:C: adjacent_3p } 0 12 {A7R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:C -> A19R:U: adjacent_5p } 0 15 {A19R:U -> A18R:C: adjacent_3p } 0 16 {A19R:U -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:A 0 2 A8R:C 0 3 A19R:G 0 4 A20R:A 0 5 A21R:A 0 6 A22R:G 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A8R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> A20R:A: adjacent_5p } 0 9 {A20R:A -> A19R:G: adjacent_3p } 0 10 {A20R:A -> A21R:A: adjacent_5p } 0 11 {A21R:A -> A20R:A: adjacent_3p } 0 12 {A21R:A -> A22R:G: adjacent_5p } 0 13 {A22R:G -> A21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:U 0 2 A15R:C 0 3 A31R:C 0 4 A32R:A 0 5 A33R:G 0 6 A34R:C 0 [Edges] 0 {A13R:G -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:U -> A15R:C: adjacent_5p upward } 0 5 {A15R:C -> A14R:U: adjacent_3p downward } 0 6 {A14R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A33R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A15R:C -> A31R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 9 {A31R:C -> A15R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 10 {A15R:C -> A32R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 11 {A32R:A -> A15R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 12 {A31R:C -> A32R:A: adjacent_5p } 0 13 {A32R:A -> A31R:C: adjacent_3p } 0 14 {A32R:A -> A33R:G: adjacent_5p upward } 0 15 {A33R:G -> A32R:A: adjacent_3p downward } 0 16 {A33R:G -> A34R:C: adjacent_5p upward } 0 17 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . . 11 13 . 14 . 5 . 7 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A29R:A 0 1 A30R:G 0 2 A31R:C 0 3 A15R:C 0 4 A16R:A 0 5 A17R:G 0 6 A18R:G 0 [Edges] 0 {A15R:C -> A16R:A: adjacent_5p } 0 1 {A16R:A -> A15R:C: adjacent_3p } 0 2 {A15R:C -> A31R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 3 {A31R:C -> A15R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 4 {A16R:A -> A17R:G: adjacent_5p upward } 0 5 {A17R:G -> A16R:A: adjacent_3p downward } 0 6 {A17R:G -> A18R:G: adjacent_5p upward } 0 7 {A18R:G -> A17R:G: adjacent_3p downward } 0 8 {A18R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A29R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A29R:A -> A30R:G: adjacent_5p upward } 0 11 {A30R:G -> A29R:A: adjacent_3p downward } 0 12 {A30R:G -> A31R:C: adjacent_5p } 0 13 {A31R:C -> A30R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 10 . . . . 9 1 11 . 12 . . . . 2 . 13 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A46R:G 0 1 A47R:G 0 2 A48R:G 0 3 B71R:G 0 4 B72R:U 0 5 B73R:A 0 6 B74R:C 0 [Edges] 0 {A46R:G -> A47R:G: adjacent_5p upward } 0 1 {A47R:G -> A46R:G: adjacent_3p downward } 0 2 {A46R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B74R:C -> A46R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A47R:G -> A48R:G: adjacent_5p upward } 0 5 {A48R:G -> A47R:G: adjacent_3p downward } 0 6 {A47R:G -> B73R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A48R:G -> B71R:G: pairing parallel cis VI Ww/Hh } 0 9 {B71R:G -> A48R:G: pairing parallel cis VI Hh/Ww } 0 10 {B71R:G -> B72R:U: adjacent_5p } 0 11 {B72R:U -> B71R:G: adjacent_3p } 0 12 {B71R:G -> B73R:A: outward } 0 13 {B73R:A -> B71R:G: outward } 0 14 {B72R:U -> B73R:A: adjacent_5p } 0 15 {B73R:A -> B72R:U: adjacent_3p } 0 16 {B73R:A -> B74R:C: adjacent_5p upward } 0 17 {B74R:C -> B73R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A47R:G 0 1 A48R:G 0 2 A49R:C 0 3 B70R:G 0 4 B71R:G 0 5 B72R:U 0 6 B73R:A 0 [Edges] 0 {A47R:G -> A48R:G: adjacent_5p upward } 0 1 {A48R:G -> A47R:G: adjacent_3p downward } 0 2 {A47R:G -> B73R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A48R:G -> A49R:C: adjacent_5p upward } 0 5 {A49R:C -> A48R:G: adjacent_3p downward } 0 6 {A48R:G -> B71R:G: pairing parallel cis VI Ww/Hh } 0 7 {B71R:G -> A48R:G: pairing parallel cis VI Hh/Ww } 0 8 {A49R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B70R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B70R:G -> B71R:G: adjacent_5p inward } 0 11 {B71R:G -> B70R:G: adjacent_3p inward } 0 12 {B71R:G -> B72R:U: adjacent_5p } 0 13 {B72R:U -> B71R:G: adjacent_3p } 0 14 {B71R:G -> B73R:A: outward } 0 15 {B73R:A -> B71R:G: outward } 0 16 {B72R:U -> B73R:A: adjacent_5p } 0 17 {B73R:A -> B72R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A49R:C 0 1 A50R:G 0 2 A51R:C 0 3 B67R:G 0 4 B68R:A 0 5 B69R:C 0 6 B70R:G 0 [Edges] 0 {A49R:C -> A50R:G: adjacent_5p upward } 0 1 {A50R:G -> A49R:C: adjacent_3p downward } 0 2 {A49R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B70R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A50R:G -> A51R:C: adjacent_5p upward } 0 5 {A51R:C -> A50R:G: adjacent_3p downward } 0 6 {A50R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A50R:G -> B70R:G: outward } 0 9 {B70R:G -> A50R:G: outward } 0 10 {A51R:C -> B67R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B67R:G -> B68R:A: adjacent_5p } 0 13 {B68R:A -> B67R:G: adjacent_3p } 0 14 {B67R:G -> B69R:C: upward } 0 15 {B69R:C -> B67R:G: downward } 0 16 {B68R:A -> B69R:C: adjacent_5p } 0 17 {B69R:C -> B68R:A: adjacent_3p } 0 18 {B69R:C -> B70R:G: adjacent_5p upward } 0 19 {B70R:G -> B69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A50R:G 0 1 A51R:C 0 2 A52R:A 0 3 B66R:U 0 4 B67R:G 0 5 B68R:A 0 6 B69R:C 0 [Edges] 0 {A50R:G -> A51R:C: adjacent_5p upward } 0 1 {A51R:C -> A50R:G: adjacent_3p downward } 0 2 {A50R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A51R:C -> A52R:A: adjacent_5p upward } 0 5 {A52R:A -> A51R:C: adjacent_3p downward } 0 6 {A51R:C -> B67R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A52R:A -> B66R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B66R:U -> A52R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A52R:A -> B67R:G: outward } 0 11 {B67R:G -> A52R:A: outward } 0 12 {B66R:U -> B67R:G: adjacent_5p upward } 0 13 {B67R:G -> B66R:U: adjacent_3p downward } 0 14 {B67R:G -> B68R:A: adjacent_5p } 0 15 {B68R:A -> B67R:G: adjacent_3p } 0 16 {B67R:G -> B69R:C: upward } 0 17 {B69R:C -> B67R:G: downward } 0 18 {B68R:A -> B69R:C: adjacent_5p } 0 19 {B69R:C -> B68R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . MOLECULE: [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:G 0 2 A16R:G 0 3 A6R:C 0 4 A7R:A 0 5 A8R:C 0 6 A9R:C 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A8R:C -> A9R:C: adjacent_5p upward } 0 7 {A9R:C -> A8R:C: adjacent_3p downward } 0 8 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> A15R:G: adjacent_5p upward } 0 13 {A15R:G -> A14R:G: adjacent_3p downward } 0 14 {A15R:G -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:G 0 2 A17R:A 0 3 A5R:U 0 4 A6R:C 0 5 A7R:A 0 6 A8R:C 0 [Edges] 0 {A5R:U -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A17R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:C -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:A -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:A: adjacent_3p downward } 0 10 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A16R:G: adjacent_5p upward } 0 13 {A16R:G -> A15R:G: adjacent_3p downward } 0 14 {A16R:G -> A17R:A: adjacent_5p upward } 0 15 {A17R:A -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:A 0 2 A15R:U 0 3 A29R:C 0 4 A30R:G 0 5 A31R:A 0 6 A32R:G 0 [Edges] 0 {A13R:C -> A14R:A: adjacent_5p inward } 0 1 {A14R:A -> A13R:C: adjacent_3p inward } 0 2 {A13R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:A -> A15R:U: adjacent_5p } 0 5 {A15R:U -> A14R:A: adjacent_3p } 0 6 {A14R:A -> A31R:A: pairing parallel trans I Ww/Ww } 0 7 {A31R:A -> A14R:A: pairing parallel trans I Ww/Ww } 0 8 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {A29R:C -> A30R:G: adjacent_5p inward } 0 11 {A30R:G -> A29R:C: adjacent_3p inward } 0 12 {A30R:G -> A31R:A: adjacent_5p } 0 13 {A31R:A -> A30R:G: adjacent_3p } 0 14 {A31R:A -> A32R:G: adjacent_5p upward } 0 15 {A32R:G -> A31R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A17R:A 0 1 A18R:C 0 2 A19R:C 0 3 A26R:G 0 4 A27R:U 0 5 A28R:G 0 6 A29R:C 0 [Edges] 0 {A17R:A -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:A: adjacent_3p downward } 0 2 {A17R:A -> A29R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {A29R:C -> A17R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {A18R:C -> A19R:C: adjacent_5p upward } 0 5 {A19R:C -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A26R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A26R:G -> A27R:U: adjacent_5p } 0 11 {A27R:U -> A26R:G: adjacent_3p } 0 12 {A27R:U -> A28R:G: adjacent_5p } 0 13 {A28R:G -> A27R:U: adjacent_3p } 0 14 {A28R:G -> A29R:C: adjacent_5p upward } 0 15 {A29R:C -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A29R:C 0 1 A30R:G 0 2 A31R:A 0 3 A14R:A 0 4 A15R:U 0 5 A16R:A 0 6 A17R:A 0 [Edges] 0 {A14R:A -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:A: adjacent_3p } 0 2 {A14R:A -> A31R:A: pairing parallel trans I Ww/Ww } 0 3 {A31R:A -> A14R:A: pairing parallel trans I Ww/Ww } 0 4 {A15R:U -> A16R:A: adjacent_5p } 0 5 {A16R:A -> A15R:U: adjacent_3p } 0 6 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A16R:A -> A17R:A: adjacent_5p upward } 0 9 {A17R:A -> A16R:A: adjacent_3p downward } 0 10 {A17R:A -> A29R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {A29R:C -> A17R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {A29R:C -> A30R:G: adjacent_5p inward } 0 13 {A30R:G -> A29R:C: adjacent_3p inward } 0 14 {A30R:G -> A31R:A: adjacent_5p } 0 15 {A31R:A -> A30R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 C213R:C 0 1 C214R:A 0 2 C215R:U 0 3 C229R:C 0 4 C230R:G 0 5 C231R:A 0 6 C232R:G 0 [Edges] 0 {C213R:C -> C214R:A: adjacent_5p inward } 0 1 {C214R:A -> C213R:C: adjacent_3p inward } 0 2 {C213R:C -> C232R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C232R:G -> C213R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C214R:A -> C215R:U: adjacent_5p } 0 5 {C215R:U -> C214R:A: adjacent_3p } 0 6 {C214R:A -> C231R:A: pairing parallel trans I Ww/Ww } 0 7 {C231R:A -> C214R:A: pairing parallel trans I Ww/Ww } 0 8 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {C229R:C -> C230R:G: adjacent_5p inward } 0 11 {C230R:G -> C229R:C: adjacent_3p inward } 0 12 {C230R:G -> C231R:A: adjacent_5p } 0 13 {C231R:A -> C230R:G: adjacent_3p } 0 14 {C231R:A -> C232R:G: adjacent_5p upward } 0 15 {C232R:G -> C231R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 C217R:A 0 1 C218R:C 0 2 C219R:C 0 3 C226R:G 0 4 C227R:U 0 5 C228R:G 0 6 C229R:C 0 [Edges] 0 {C217R:A -> C218R:C: adjacent_5p upward } 0 1 {C218R:C -> C217R:A: adjacent_3p downward } 0 2 {C217R:A -> C229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {C229R:C -> C217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {C218R:C -> C219R:C: adjacent_5p upward } 0 5 {C219R:C -> C218R:C: adjacent_3p downward } 0 6 {C218R:C -> C228R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C228R:G -> C218R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C219R:C -> C226R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {C226R:G -> C219R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {C226R:G -> C227R:U: adjacent_5p } 0 11 {C227R:U -> C226R:G: adjacent_3p } 0 12 {C227R:U -> C228R:G: adjacent_5p } 0 13 {C228R:G -> C227R:U: adjacent_3p } 0 14 {C228R:G -> C229R:C: adjacent_5p upward } 0 15 {C229R:C -> C228R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 C229R:C 0 1 C230R:G 0 2 C231R:A 0 3 C214R:A 0 4 C215R:U 0 5 C216R:A 0 6 C217R:A 0 [Edges] 0 {C214R:A -> C215R:U: adjacent_5p } 0 1 {C215R:U -> C214R:A: adjacent_3p } 0 2 {C214R:A -> C231R:A: pairing parallel trans I Ww/Ww } 0 3 {C231R:A -> C214R:A: pairing parallel trans I Ww/Ww } 0 4 {C215R:U -> C216R:A: adjacent_5p } 0 5 {C216R:A -> C215R:U: adjacent_3p } 0 6 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C216R:A -> C217R:A: adjacent_5p upward } 0 9 {C217R:A -> C216R:A: adjacent_3p downward } 0 10 {C217R:A -> C229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {C229R:C -> C217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {C229R:C -> C230R:G: adjacent_5p inward } 0 13 {C230R:G -> C229R:C: adjacent_3p inward } 0 14 {C230R:G -> C231R:A: adjacent_5p } 0 15 {C231R:A -> C230R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 E408R:G 0 1 E409R:U 0 2 E410R:G 0 3 E418R:C 0 4 E419R:C 0 5 E420R:A 0 6 E421R:C 0 [Edges] 0 {E408R:G -> E409R:U: adjacent_5p upward } 0 1 {E409R:U -> E408R:G: adjacent_3p downward } 0 2 {E408R:G -> E421R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E421R:C -> E408R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E409R:U -> E410R:G: adjacent_5p } 0 5 {E410R:G -> E409R:U: adjacent_3p } 0 6 {E409R:U -> E420R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {E420R:A -> E409R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E410R:G -> E418R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {E418R:C -> E410R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {E418R:C -> E419R:C: adjacent_5p upward } 0 11 {E419R:C -> E418R:C: adjacent_3p downward } 0 12 {E419R:C -> E420R:A: adjacent_5p upward } 0 13 {E420R:A -> E419R:C: adjacent_3p downward } 0 14 {E420R:A -> E421R:C: adjacent_5p upward } 0 15 {E421R:C -> E420R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E413R:C 0 1 E414R:A 0 2 E415R:U 0 3 E429R:C 0 4 E430R:G 0 5 E431R:A 0 6 E432R:G 0 [Edges] 0 {E413R:C -> E414R:A: adjacent_5p inward } 0 1 {E414R:A -> E413R:C: adjacent_3p inward } 0 2 {E413R:C -> E432R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E432R:G -> E413R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E414R:A -> E415R:U: adjacent_5p } 0 5 {E415R:U -> E414R:A: adjacent_3p } 0 6 {E414R:A -> E431R:A: pairing parallel trans I Ww/Ww } 0 7 {E431R:A -> E414R:A: pairing parallel trans I Ww/Ww } 0 8 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {E429R:C -> E430R:G: adjacent_5p inward } 0 11 {E430R:G -> E429R:C: adjacent_3p inward } 0 12 {E430R:G -> E431R:A: adjacent_5p } 0 13 {E431R:A -> E430R:G: adjacent_3p } 0 14 {E431R:A -> E432R:G: adjacent_5p upward } 0 15 {E432R:G -> E431R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E417R:A 0 1 E418R:C 0 2 E419R:C 0 3 E426R:G 0 4 E427R:U 0 5 E428R:G 0 6 E429R:C 0 [Edges] 0 {E417R:A -> E418R:C: adjacent_5p upward } 0 1 {E418R:C -> E417R:A: adjacent_3p downward } 0 2 {E417R:A -> E429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {E429R:C -> E417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {E418R:C -> E419R:C: adjacent_5p upward } 0 5 {E419R:C -> E418R:C: adjacent_3p downward } 0 6 {E418R:C -> E428R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E428R:G -> E418R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E419R:C -> E426R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {E426R:G -> E419R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {E426R:G -> E427R:U: adjacent_5p } 0 11 {E427R:U -> E426R:G: adjacent_3p } 0 12 {E427R:U -> E428R:G: adjacent_5p } 0 13 {E428R:G -> E427R:U: adjacent_3p } 0 14 {E428R:G -> E429R:C: adjacent_5p upward } 0 15 {E429R:C -> E428R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E429R:C 0 1 E430R:G 0 2 E431R:A 0 3 E414R:A 0 4 E415R:U 0 5 E416R:A 0 6 E417R:A 0 [Edges] 0 {E414R:A -> E415R:U: adjacent_5p } 0 1 {E415R:U -> E414R:A: adjacent_3p } 0 2 {E414R:A -> E431R:A: pairing parallel trans I Ww/Ww } 0 3 {E431R:A -> E414R:A: pairing parallel trans I Ww/Ww } 0 4 {E415R:U -> E416R:A: adjacent_5p } 0 5 {E416R:A -> E415R:U: adjacent_3p } 0 6 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {E416R:A -> E417R:A: adjacent_5p upward } 0 9 {E417R:A -> E416R:A: adjacent_3p downward } 0 10 {E417R:A -> E429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {E429R:C -> E417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {E429R:C -> E430R:G: adjacent_5p inward } 0 13 {E430R:G -> E429R:C: adjacent_3p inward } 0 14 {E430R:G -> E431R:A: adjacent_5p } 0 15 {E431R:A -> E430R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 G608R:G 0 1 G609R:U 0 2 G610R:G 0 3 G618R:C 0 4 G619R:C 0 5 G620R:A 0 6 G621R:C 0 [Edges] 0 {G608R:G -> G609R:U: adjacent_5p upward } 0 1 {G609R:U -> G608R:G: adjacent_3p downward } 0 2 {G608R:G -> G621R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {G621R:C -> G608R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G609R:U -> G610R:G: adjacent_5p } 0 5 {G610R:G -> G609R:U: adjacent_3p } 0 6 {G609R:U -> G620R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {G620R:A -> G609R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G610R:G -> G618R:C: pairing antiparallel cis one_hbond 123 Wh/Bh } 0 9 {G618R:C -> G610R:G: pairing antiparallel cis one_hbond 123 Bh/Wh } 0 10 {G618R:C -> G619R:C: adjacent_5p upward } 0 11 {G619R:C -> G618R:C: adjacent_3p downward } 0 12 {G619R:C -> G620R:A: adjacent_5p upward } 0 13 {G620R:A -> G619R:C: adjacent_3p downward } 0 14 {G620R:A -> G621R:C: adjacent_5p upward } 0 15 {G621R:C -> G620R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 G613R:C 0 1 G614R:A 0 2 G615R:U 0 3 G629R:C 0 4 G630R:G 0 5 G631R:A 0 6 G632R:G 0 [Edges] 0 {G613R:C -> G614R:A: adjacent_5p inward } 0 1 {G614R:A -> G613R:C: adjacent_3p inward } 0 2 {G613R:C -> G632R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {G632R:G -> G613R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G614R:A -> G615R:U: adjacent_5p } 0 5 {G615R:U -> G614R:A: adjacent_3p } 0 6 {G614R:A -> G631R:A: pairing parallel trans one_hbond Ww/Ww } 0 7 {G631R:A -> G614R:A: pairing parallel trans one_hbond Ww/Ww } 0 8 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {G629R:C -> G630R:G: adjacent_5p inward } 0 11 {G630R:G -> G629R:C: adjacent_3p inward } 0 12 {G630R:G -> G631R:A: adjacent_5p } 0 13 {G631R:A -> G630R:G: adjacent_3p } 0 14 {G631R:A -> G632R:G: adjacent_5p upward } 0 15 {G632R:G -> G631R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 G617R:A 0 1 G618R:C 0 2 G619R:C 0 3 G626R:G 0 4 G627R:U 0 5 G628R:G 0 6 G629R:C 0 [Edges] 0 {G617R:A -> G618R:C: adjacent_5p upward } 0 1 {G618R:C -> G617R:A: adjacent_3p downward } 0 2 {G617R:A -> G629R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {G629R:C -> G617R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {G618R:C -> G619R:C: adjacent_5p upward } 0 5 {G619R:C -> G618R:C: adjacent_3p downward } 0 6 {G618R:C -> G628R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {G628R:G -> G618R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G619R:C -> G626R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {G626R:G -> G619R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {G626R:G -> G627R:U: adjacent_5p } 0 11 {G627R:U -> G626R:G: adjacent_3p } 0 12 {G627R:U -> G628R:G: adjacent_5p } 0 13 {G628R:G -> G627R:U: adjacent_3p } 0 14 {G627R:U -> G629R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 15 {G629R:C -> G627R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 16 {G628R:G -> G629R:C: adjacent_5p upward } 0 17 {G629R:C -> G628R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 14 5 . 7 . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 G629R:C 0 1 G630R:G 0 2 G631R:A 0 3 G614R:A 0 4 G615R:U 0 5 G616R:A 0 6 G617R:A 0 [Edges] 0 {G614R:A -> G615R:U: adjacent_5p } 0 1 {G615R:U -> G614R:A: adjacent_3p } 0 2 {G614R:A -> G631R:A: pairing parallel trans one_hbond Ww/Ww } 0 3 {G631R:A -> G614R:A: pairing parallel trans one_hbond Ww/Ww } 0 4 {G615R:U -> G616R:A: adjacent_5p } 0 5 {G616R:A -> G615R:U: adjacent_3p } 0 6 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {G616R:A -> G617R:A: adjacent_5p upward } 0 9 {G617R:A -> G616R:A: adjacent_3p downward } 0 10 {G617R:A -> G629R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {G629R:C -> G617R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {G629R:C -> G630R:G: adjacent_5p inward } 0 13 {G630R:G -> G629R:C: adjacent_3p inward } 0 14 {G630R:G -> G631R:A: adjacent_5p } 0 15 {G631R:A -> G630R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:C 0 2 A4R:A 0 3 B15R:U 0 4 B16R:C 0 5 B17R:G 0 6 B18R:G 0 [Edges] 0 {A2R:C -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B15R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A4R:A -> B17R:G: outward } 0 11 {B17R:G -> A4R:A: outward } 0 12 {B15R:U -> B16R:C: adjacent_5p } 0 13 {B16R:C -> B15R:U: adjacent_3p } 0 14 {B16R:C -> B17R:G: adjacent_5p } 0 15 {B17R:G -> B16R:C: adjacent_3p } 0 16 {B17R:G -> B18R:G: adjacent_5p upward } 0 17 {B18R:G -> B17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . 10 . 3 . . 9 . 12 . . 4 . . . 13 . 14 . 5 . 7 11 . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:C 0 3 B14R:G 0 4 B15R:U 0 5 B16R:C 0 6 B17R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B15R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> B17R:G: outward } 0 9 {B17R:G -> A4R:A: outward } 0 10 {A5R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B14R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B14R:G -> B15R:U: adjacent_5p upward } 0 13 {B15R:U -> B14R:G: adjacent_3p downward } 0 14 {B15R:U -> B16R:C: adjacent_5p } 0 15 {B16R:C -> B15R:U: adjacent_3p } 0 16 {B16R:C -> B17R:G: adjacent_5p } 0 17 {B17R:G -> B16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . . . . 15 . 16 6 3 9 . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A104R:G 0 1 A105R:G 0 2 A106R:G 0 3 B124R:G 0 4 B125R:U 0 5 B126R:A 0 6 B127R:C 0 [Edges] 0 {A104R:G -> A105R:G: adjacent_5p upward } 0 1 {A105R:G -> A104R:G: adjacent_3p downward } 0 2 {A104R:G -> B127R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B127R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A105R:G -> A106R:G: adjacent_5p upward } 0 5 {A106R:G -> A105R:G: adjacent_3p downward } 0 6 {A105R:G -> B126R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B126R:A -> A105R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A106R:G -> B124R:G: pairing parallel cis VI Ww/Hh } 0 9 {B124R:G -> A106R:G: pairing parallel cis VI Hh/Ww } 0 10 {B124R:G -> B125R:U: adjacent_5p } 0 11 {B125R:U -> B124R:G: adjacent_3p } 0 12 {B124R:G -> B126R:A: outward } 0 13 {B126R:A -> B124R:G: outward } 0 14 {B125R:U -> B126R:A: adjacent_5p } 0 15 {B126R:A -> B125R:U: adjacent_3p } 0 16 {B126R:A -> B127R:C: adjacent_5p upward } 0 17 {B127R:C -> B126R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A105R:G 0 1 A106R:G 0 2 A107R:C 0 3 B123R:G 0 4 B124R:G 0 5 B125R:U 0 6 B126R:A 0 [Edges] 0 {A105R:G -> A106R:G: adjacent_5p upward } 0 1 {A106R:G -> A105R:G: adjacent_3p downward } 0 2 {A105R:G -> B126R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B126R:A -> A105R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A106R:G -> A107R:C: adjacent_5p upward } 0 5 {A107R:C -> A106R:G: adjacent_3p downward } 0 6 {A106R:G -> B124R:G: pairing parallel cis VI Ww/Hh } 0 7 {B124R:G -> A106R:G: pairing parallel cis VI Hh/Ww } 0 8 {A107R:C -> B123R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B123R:G -> A107R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B123R:G -> B124R:G: adjacent_5p inward } 0 11 {B124R:G -> B123R:G: adjacent_3p inward } 0 12 {B124R:G -> B125R:U: adjacent_5p } 0 13 {B125R:U -> B124R:G: adjacent_3p } 0 14 {B124R:G -> B126R:A: outward } 0 15 {B126R:A -> B124R:G: outward } 0 16 {B125R:U -> B126R:A: adjacent_5p } 0 17 {B126R:A -> B125R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A107R:C 0 1 A108R:G 0 2 A109R:C 0 3 B120R:G 0 4 B121R:A 0 5 B122R:C 0 6 B123R:G 0 [Edges] 0 {A107R:C -> A108R:G: adjacent_5p upward } 0 1 {A108R:G -> A107R:C: adjacent_3p downward } 0 2 {A107R:C -> B123R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B123R:G -> A107R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A108R:G -> A109R:C: adjacent_5p upward } 0 5 {A109R:C -> A108R:G: adjacent_3p downward } 0 6 {A108R:G -> B122R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B122R:C -> A108R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A108R:G -> B123R:G: outward } 0 9 {B123R:G -> A108R:G: outward } 0 10 {A109R:C -> B120R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B120R:G -> A109R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B120R:G -> B121R:A: adjacent_5p } 0 13 {B121R:A -> B120R:G: adjacent_3p } 0 14 {B120R:G -> B122R:C: upward } 0 15 {B122R:C -> B120R:G: downward } 0 16 {B121R:A -> B122R:C: adjacent_5p } 0 17 {B122R:C -> B121R:A: adjacent_3p } 0 18 {B122R:C -> B123R:G: adjacent_5p } 0 19 {B123R:G -> B122R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A108R:G 0 1 A109R:C 0 2 A110R:A 0 3 B119R:U 0 4 B120R:G 0 5 B121R:A 0 6 B122R:C 0 [Edges] 0 {A108R:G -> A109R:C: adjacent_5p upward } 0 1 {A109R:C -> A108R:G: adjacent_3p downward } 0 2 {A108R:G -> B122R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B122R:C -> A108R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A109R:C -> A110R:A: adjacent_5p } 0 5 {A110R:A -> A109R:C: adjacent_3p } 0 6 {A109R:C -> B120R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B120R:G -> A109R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A110R:A -> B119R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B119R:U -> A110R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A110R:A -> B120R:G: outward } 0 11 {B120R:G -> A110R:A: outward } 0 12 {B119R:U -> B120R:G: adjacent_5p } 0 13 {B120R:G -> B119R:U: adjacent_3p } 0 14 {B120R:G -> B121R:A: adjacent_5p } 0 15 {B121R:A -> B120R:G: adjacent_3p } 0 16 {B120R:G -> B122R:C: upward } 0 17 {B122R:C -> B120R:G: downward } 0 18 {B121R:A -> B122R:C: adjacent_5p } 0 19 {B122R:C -> B121R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . [GraphModel] [Vertices] 0 C204R:G 0 1 C205R:G 0 2 C206R:G 0 3 D224R:G 0 4 D225R:U 0 5 D226R:A 0 6 D227R:C 0 [Edges] 0 {C204R:G -> C205R:G: adjacent_5p upward } 0 1 {C205R:G -> C204R:G: adjacent_3p downward } 0 2 {C204R:G -> D227R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D227R:C -> C204R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C205R:G -> C206R:G: adjacent_5p upward } 0 5 {C206R:G -> C205R:G: adjacent_3p downward } 0 6 {C205R:G -> D226R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 7 {D226R:A -> C205R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 8 {C206R:G -> D224R:G: pairing parallel cis VI Ww/Hh } 0 9 {D224R:G -> C206R:G: pairing parallel cis VI Hh/Ww } 0 10 {D224R:G -> D225R:U: adjacent_5p } 0 11 {D225R:U -> D224R:G: adjacent_3p } 0 12 {D224R:G -> D226R:A: outward } 0 13 {D226R:A -> D224R:G: outward } 0 14 {D225R:U -> D226R:A: adjacent_5p } 0 15 {D226R:A -> D225R:U: adjacent_3p } 0 16 {D226R:A -> D227R:C: adjacent_5p } 0 17 {D227R:C -> D226R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 C205R:G 0 1 C206R:G 0 2 C207R:C 0 3 D223R:G 0 4 D224R:G 0 5 D225R:U 0 6 D226R:A 0 [Edges] 0 {C205R:G -> C206R:G: adjacent_5p upward } 0 1 {C206R:G -> C205R:G: adjacent_3p downward } 0 2 {C205R:G -> D226R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 3 {D226R:A -> C205R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 4 {C206R:G -> C207R:C: adjacent_5p upward } 0 5 {C207R:C -> C206R:G: adjacent_3p downward } 0 6 {C206R:G -> D224R:G: pairing parallel cis VI Ww/Hh } 0 7 {D224R:G -> C206R:G: pairing parallel cis VI Hh/Ww } 0 8 {C207R:C -> D223R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D223R:G -> C207R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D223R:G -> D224R:G: adjacent_5p inward } 0 11 {D224R:G -> D223R:G: adjacent_3p inward } 0 12 {D224R:G -> D225R:U: adjacent_5p } 0 13 {D225R:U -> D224R:G: adjacent_3p } 0 14 {D224R:G -> D226R:A: outward } 0 15 {D226R:A -> D224R:G: outward } 0 16 {D225R:U -> D226R:A: adjacent_5p } 0 17 {D226R:A -> D225R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 C207R:C 0 1 C208R:G 0 2 C209R:C 0 3 D220R:G 0 4 D221R:A 0 5 D222R:C 0 6 D223R:G 0 [Edges] 0 {C207R:C -> C208R:G: adjacent_5p } 0 1 {C208R:G -> C207R:C: adjacent_3p } 0 2 {C207R:C -> D223R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D223R:G -> C207R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C208R:G -> C209R:C: adjacent_5p upward } 0 5 {C209R:C -> C208R:G: adjacent_3p downward } 0 6 {C208R:G -> D222R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D222R:C -> C208R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C208R:G -> D223R:G: outward } 0 9 {D223R:G -> C208R:G: outward } 0 10 {C209R:C -> D220R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D220R:G -> C209R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D220R:G -> D221R:A: adjacent_5p } 0 13 {D221R:A -> D220R:G: adjacent_3p } 0 14 {D220R:G -> D222R:C: upward } 0 15 {D222R:C -> D220R:G: downward } 0 16 {D221R:A -> D222R:C: adjacent_5p } 0 17 {D222R:C -> D221R:A: adjacent_3p } 0 18 {D222R:C -> D223R:G: adjacent_5p } 0 19 {D223R:G -> D222R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 C208R:G 0 1 C209R:C 0 2 C210R:A 0 3 D219R:U 0 4 D220R:G 0 5 D221R:A 0 6 D222R:C 0 [Edges] 0 {C208R:G -> C209R:C: adjacent_5p upward } 0 1 {C209R:C -> C208R:G: adjacent_3p downward } 0 2 {C208R:G -> D222R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D222R:C -> C208R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C209R:C -> C210R:A: adjacent_5p } 0 5 {C210R:A -> C209R:C: adjacent_3p } 0 6 {C209R:C -> D220R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D220R:G -> C209R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C210R:A -> D219R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {D219R:U -> C210R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C210R:A -> D220R:G: outward } 0 11 {D220R:G -> C210R:A: outward } 0 12 {D219R:U -> D220R:G: adjacent_5p upward } 0 13 {D220R:G -> D219R:U: adjacent_3p downward } 0 14 {D220R:G -> D221R:A: adjacent_5p } 0 15 {D221R:A -> D220R:G: adjacent_3p } 0 16 {D220R:G -> D222R:C: upward } 0 17 {D222R:C -> D220R:G: downward } 0 18 {D221R:A -> D222R:C: adjacent_5p } 0 19 {D222R:C -> D221R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . [GraphModel] [Vertices] 0 E304R:G 0 1 E305R:G 0 2 E306R:G 0 3 F324R:G 0 4 F325R:U 0 5 F326R:A 0 6 F327R:C 0 [Edges] 0 {E304R:G -> E305R:G: adjacent_5p upward } 0 1 {E305R:G -> E304R:G: adjacent_3p downward } 0 2 {E304R:G -> F327R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F327R:C -> E304R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E305R:G -> E306R:G: adjacent_5p upward } 0 5 {E306R:G -> E305R:G: adjacent_3p downward } 0 6 {E305R:G -> F326R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {F326R:A -> E305R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {E306R:G -> F324R:G: pairing parallel cis VI Ww/Hh } 0 9 {F324R:G -> E306R:G: pairing parallel cis VI Hh/Ww } 0 10 {F324R:G -> F325R:U: adjacent_5p } 0 11 {F325R:U -> F324R:G: adjacent_3p } 0 12 {F324R:G -> F326R:A: outward } 0 13 {F326R:A -> F324R:G: outward } 0 14 {F325R:U -> F326R:A: adjacent_5p } 0 15 {F326R:A -> F325R:U: adjacent_3p } 0 16 {F326R:A -> F327R:C: adjacent_5p upward } 0 17 {F327R:C -> F326R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 E305R:G 0 1 E306R:G 0 2 E307R:C 0 3 F323R:G 0 4 F324R:G 0 5 F325R:U 0 6 F326R:A 0 [Edges] 0 {E305R:G -> E306R:G: adjacent_5p upward } 0 1 {E306R:G -> E305R:G: adjacent_3p downward } 0 2 {E305R:G -> F326R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {F326R:A -> E305R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {E306R:G -> E307R:C: adjacent_5p upward } 0 5 {E307R:C -> E306R:G: adjacent_3p downward } 0 6 {E306R:G -> F324R:G: pairing parallel cis VI Ww/Hh } 0 7 {F324R:G -> E306R:G: pairing parallel cis VI Hh/Ww } 0 8 {E307R:C -> F323R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {F323R:G -> E307R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {F323R:G -> F324R:G: adjacent_5p inward } 0 11 {F324R:G -> F323R:G: adjacent_3p inward } 0 12 {F324R:G -> F325R:U: adjacent_5p } 0 13 {F325R:U -> F324R:G: adjacent_3p } 0 14 {F324R:G -> F326R:A: outward } 0 15 {F326R:A -> F324R:G: outward } 0 16 {F325R:U -> F326R:A: adjacent_5p } 0 17 {F326R:A -> F325R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 E307R:C 0 1 E308R:G 0 2 E309R:C 0 3 F320R:G 0 4 F321R:A 0 5 F322R:C 0 6 F323R:G 0 [Edges] 0 {E307R:C -> E308R:G: adjacent_5p upward } 0 1 {E308R:G -> E307R:C: adjacent_3p downward } 0 2 {E307R:C -> F323R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F323R:G -> E307R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E308R:G -> E309R:C: adjacent_5p upward } 0 5 {E309R:C -> E308R:G: adjacent_3p downward } 0 6 {E308R:G -> F322R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F322R:C -> E308R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E308R:G -> F323R:G: outward } 0 9 {F323R:G -> E308R:G: outward } 0 10 {E309R:C -> F320R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F320R:G -> E309R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {F320R:G -> F321R:A: adjacent_5p } 0 13 {F321R:A -> F320R:G: adjacent_3p } 0 14 {F320R:G -> F322R:C: upward } 0 15 {F322R:C -> F320R:G: downward } 0 16 {F321R:A -> F322R:C: adjacent_5p } 0 17 {F322R:C -> F321R:A: adjacent_3p } 0 18 {F322R:C -> F323R:G: adjacent_5p } 0 19 {F323R:G -> F322R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 E308R:G 0 1 E309R:C 0 2 E310R:A 0 3 F319R:U 0 4 F320R:G 0 5 F321R:A 0 6 F322R:C 0 [Edges] 0 {E308R:G -> E309R:C: adjacent_5p upward } 0 1 {E309R:C -> E308R:G: adjacent_3p downward } 0 2 {E308R:G -> F322R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F322R:C -> E308R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E309R:C -> E310R:A: adjacent_5p } 0 5 {E310R:A -> E309R:C: adjacent_3p } 0 6 {E309R:C -> F320R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F320R:G -> E309R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E310R:A -> F319R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {F319R:U -> E310R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {E310R:A -> F320R:G: outward } 0 11 {F320R:G -> E310R:A: outward } 0 12 {F319R:U -> F320R:G: adjacent_5p } 0 13 {F320R:G -> F319R:U: adjacent_3p } 0 14 {F320R:G -> F321R:A: adjacent_5p } 0 15 {F321R:A -> F320R:G: adjacent_3p } 0 16 {F320R:G -> F322R:C: upward } 0 17 {F322R:C -> F320R:G: downward } 0 18 {F321R:A -> F322R:C: adjacent_5p } 0 19 {F322R:C -> F321R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . [GraphModel] [Vertices] 0 G404R:G 0 1 G405R:G 0 2 G406R:G 0 3 H424R:G 0 4 H425R:U 0 5 H426R:A 0 6 H427R:C 0 [Edges] 0 {G404R:G -> G405R:G: adjacent_5p upward } 0 1 {G405R:G -> G404R:G: adjacent_3p downward } 0 2 {G404R:G -> H427R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H427R:C -> G404R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G405R:G -> G406R:G: adjacent_5p upward } 0 5 {G406R:G -> G405R:G: adjacent_3p downward } 0 6 {G405R:G -> H426R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 7 {H426R:A -> G405R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 8 {G406R:G -> H424R:G: pairing parallel cis VI Ww/Hh } 0 9 {H424R:G -> G406R:G: pairing parallel cis VI Hh/Ww } 0 10 {H424R:G -> H425R:U: adjacent_5p } 0 11 {H425R:U -> H424R:G: adjacent_3p } 0 12 {H424R:G -> H426R:A: outward } 0 13 {H426R:A -> H424R:G: outward } 0 14 {H425R:U -> H426R:A: adjacent_5p } 0 15 {H426R:A -> H425R:U: adjacent_3p } 0 16 {H426R:A -> H427R:C: adjacent_5p } 0 17 {H427R:C -> H426R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 G405R:G 0 1 G406R:G 0 2 G407R:C 0 3 H423R:G 0 4 H424R:G 0 5 H425R:U 0 6 H426R:A 0 [Edges] 0 {G405R:G -> G406R:G: adjacent_5p upward } 0 1 {G406R:G -> G405R:G: adjacent_3p downward } 0 2 {G405R:G -> H426R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 3 {H426R:A -> G405R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 4 {G406R:G -> G407R:C: adjacent_5p upward } 0 5 {G407R:C -> G406R:G: adjacent_3p downward } 0 6 {G406R:G -> H424R:G: pairing parallel cis VI Ww/Hh } 0 7 {H424R:G -> G406R:G: pairing parallel cis VI Hh/Ww } 0 8 {G407R:C -> H423R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {H423R:G -> G407R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {H423R:G -> H424R:G: adjacent_5p inward } 0 11 {H424R:G -> H423R:G: adjacent_3p inward } 0 12 {H424R:G -> H425R:U: adjacent_5p } 0 13 {H425R:U -> H424R:G: adjacent_3p } 0 14 {H424R:G -> H426R:A: outward } 0 15 {H426R:A -> H424R:G: outward } 0 16 {H425R:U -> H426R:A: adjacent_5p } 0 17 {H426R:A -> H425R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 G407R:C 0 1 G408R:G 0 2 G409R:C 0 3 H420R:G 0 4 H421R:A 0 5 H422R:C 0 6 H423R:G 0 [Edges] 0 {G407R:C -> G408R:G: adjacent_5p upward } 0 1 {G408R:G -> G407R:C: adjacent_3p downward } 0 2 {G407R:C -> H423R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {H423R:G -> G407R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G408R:G -> G409R:C: adjacent_5p upward } 0 5 {G409R:C -> G408R:G: adjacent_3p downward } 0 6 {G408R:G -> H422R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H422R:C -> G408R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G408R:G -> H423R:G: outward } 0 9 {H423R:G -> G408R:G: outward } 0 10 {G409R:C -> H420R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {H420R:G -> G409R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {H420R:G -> H421R:A: adjacent_5p } 0 13 {H421R:A -> H420R:G: adjacent_3p } 0 14 {H420R:G -> H422R:C: upward } 0 15 {H422R:C -> H420R:G: downward } 0 16 {H421R:A -> H422R:C: adjacent_5p } 0 17 {H422R:C -> H421R:A: adjacent_3p } 0 18 {H422R:C -> H423R:G: adjacent_5p } 0 19 {H423R:G -> H422R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 G408R:G 0 1 G409R:C 0 2 G410R:A 0 3 H419R:U 0 4 H420R:G 0 5 H421R:A 0 6 H422R:C 0 [Edges] 0 {G408R:G -> G409R:C: adjacent_5p upward } 0 1 {G409R:C -> G408R:G: adjacent_3p downward } 0 2 {G408R:G -> H422R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H422R:C -> G408R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G409R:C -> G410R:A: adjacent_5p } 0 5 {G410R:A -> G409R:C: adjacent_3p } 0 6 {G409R:C -> H420R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {H420R:G -> G409R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G410R:A -> H419R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {H419R:U -> G410R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {G410R:A -> H420R:G: outward } 0 11 {H420R:G -> G410R:A: outward } 0 12 {H419R:U -> H420R:G: adjacent_5p upward } 0 13 {H420R:G -> H419R:U: adjacent_3p downward } 0 14 {H420R:G -> H421R:A: adjacent_5p } 0 15 {H421R:A -> H420R:G: adjacent_3p } 0 16 {H420R:G -> H422R:C: upward } 0 17 {H422R:C -> H420R:G: downward } 0 18 {H421R:A -> H422R:C: adjacent_5p } 0 19 {H422R:C -> H421R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . MOLECULE: [GraphModel] [Vertices] 0 4R:G 0 1 5R:G 0 2 6R:G 0 3 24R:G 0 4 25R:U 0 5 26R:A 0 6 27R:C 0 [Edges] 0 {4R:G -> 5R:G: adjacent_5p upward } 0 1 {5R:G -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {27R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:G -> 6R:G: adjacent_5p } 0 5 {6R:G -> 5R:G: adjacent_3p } 0 6 {5R:G -> 26R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {26R:A -> 5R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {6R:G -> 24R:G: pairing parallel trans III Ww/Ww } 0 9 {24R:G -> 6R:G: pairing parallel trans III Ww/Ww } 0 10 {24R:G -> 25R:U: adjacent_5p } 0 11 {25R:U -> 24R:G: adjacent_3p } 0 12 {24R:G -> 26R:A: outward } 0 13 {26R:A -> 24R:G: outward } 0 14 {25R:U -> 26R:A: adjacent_5p } 0 15 {26R:A -> 25R:U: adjacent_3p } 0 16 {26R:A -> 27R:C: adjacent_5p upward } 0 17 {27R:C -> 26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 5R:G 0 1 6R:G 0 2 7R:C 0 3 23R:G 0 4 24R:G 0 5 25R:U 0 6 26R:A 0 [Edges] 0 {5R:G -> 6R:G: adjacent_5p } 0 1 {6R:G -> 5R:G: adjacent_3p } 0 2 {5R:G -> 26R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {26R:A -> 5R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {6R:G -> 7R:C: adjacent_5p } 0 5 {7R:C -> 6R:G: adjacent_3p } 0 6 {6R:G -> 24R:G: pairing parallel trans III Ww/Ww } 0 7 {24R:G -> 6R:G: pairing parallel trans III Ww/Ww } 0 8 {7R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {23R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {23R:G -> 24R:G: adjacent_5p } 0 11 {24R:G -> 23R:G: adjacent_3p } 0 12 {24R:G -> 25R:U: adjacent_5p } 0 13 {25R:U -> 24R:G: adjacent_3p } 0 14 {24R:G -> 26R:A: outward } 0 15 {26R:A -> 24R:G: outward } 0 16 {25R:U -> 26R:A: adjacent_5p } 0 17 {26R:A -> 25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 7R:C 0 1 8R:G 0 2 9R:C 0 3 20R:G 0 4 21R:A 0 5 22R:C 0 6 23R:G 0 [Edges] 0 {7R:C -> 8R:G: adjacent_5p } 0 1 {8R:G -> 7R:C: adjacent_3p } 0 2 {7R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {23R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {8R:G -> 9R:C: adjacent_5p upward } 0 5 {9R:C -> 8R:G: adjacent_3p downward } 0 6 {8R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {22R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {9R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {20R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {20R:G -> 21R:A: adjacent_5p } 0 11 {21R:A -> 20R:G: adjacent_3p } 0 12 {21R:A -> 22R:C: adjacent_5p } 0 13 {22R:C -> 21R:A: adjacent_3p } 0 14 {22R:C -> 23R:G: adjacent_5p upward } 0 15 {23R:G -> 22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 8R:G 0 1 9R:C 0 2 10R:A 0 3 19R:U 0 4 20R:G 0 5 21R:A 0 6 22R:C 0 [Edges] 0 {8R:G -> 9R:C: adjacent_5p upward } 0 1 {9R:C -> 8R:G: adjacent_3p downward } 0 2 {8R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:C -> 10R:A: adjacent_5p } 0 5 {10R:A -> 9R:C: adjacent_3p } 0 6 {9R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {20R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {10R:A -> 19R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {19R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {19R:U -> 20R:G: adjacent_5p upward } 0 11 {20R:G -> 19R:U: adjacent_3p downward } 0 12 {20R:G -> 21R:A: adjacent_5p } 0 13 {21R:A -> 20R:G: adjacent_3p } 0 14 {21R:A -> 22R:C: adjacent_5p } 0 15 {22R:C -> 21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 B9R:A 0 4 B10R:C 0 5 B11R:U 0 6 B12R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B11R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A10R:G -> B9R:A: pairing antiparallel cis one_hbond 67 Wh/Hw } 0 9 {B9R:A -> A10R:G: pairing antiparallel cis one_hbond 67 Hw/Wh } 0 10 {A10R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B9R:A -> B10R:C: adjacent_5p upward } 0 13 {B10R:C -> B9R:A: adjacent_3p downward } 0 14 {B10R:C -> B11R:U: adjacent_5p upward } 0 15 {B11R:U -> B10R:C: adjacent_3p downward } 0 16 {B11R:U -> B12R:G: adjacent_5p } 0 17 {B12R:G -> B11R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . . 11 13 . 14 . 5 . 7 . . 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A213R:C 0 1 A214R:A 0 2 A215R:U 0 3 A229R:C 0 4 A230R:G 0 5 A231R:A 0 6 A232R:G 0 [Edges] 0 {A213R:C -> A214R:A: adjacent_5p inward } 0 1 {A214R:A -> A213R:C: adjacent_3p inward } 0 2 {A213R:C -> A232R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A232R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A214R:A -> A215R:U: adjacent_5p } 0 5 {A215R:U -> A214R:A: adjacent_3p } 0 6 {A214R:A -> A231R:A: pairing parallel trans I Ww/Ww } 0 7 {A231R:A -> A214R:A: pairing parallel trans I Ww/Ww } 0 8 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {A229R:C -> A230R:G: adjacent_5p inward } 0 11 {A230R:G -> A229R:C: adjacent_3p inward } 0 12 {A230R:G -> A231R:A: adjacent_5p } 0 13 {A231R:A -> A230R:G: adjacent_3p } 0 14 {A231R:A -> A232R:G: adjacent_5p upward } 0 15 {A232R:G -> A231R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A217R:A 0 1 A218R:C 0 2 A219R:C 0 3 A226R:G 0 4 A227R:U 0 5 A228R:G 0 6 A229R:C 0 [Edges] 0 {A217R:A -> A218R:C: adjacent_5p upward } 0 1 {A218R:C -> A217R:A: adjacent_3p downward } 0 2 {A217R:A -> A229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {A229R:C -> A217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {A218R:C -> A219R:C: adjacent_5p upward } 0 5 {A219R:C -> A218R:C: adjacent_3p downward } 0 6 {A218R:C -> A228R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A228R:G -> A218R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A219R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A226R:G -> A219R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A226R:G -> A227R:U: adjacent_5p } 0 11 {A227R:U -> A226R:G: adjacent_3p } 0 12 {A227R:U -> A228R:G: adjacent_5p } 0 13 {A228R:G -> A227R:U: adjacent_3p } 0 14 {A227R:U -> A229R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 15 {A229R:C -> A227R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 16 {A228R:G -> A229R:C: adjacent_5p upward } 0 17 {A229R:C -> A228R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 14 5 . 7 . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A229R:C 0 1 A230R:G 0 2 A231R:A 0 3 A214R:A 0 4 A215R:U 0 5 A216R:A 0 6 A217R:A 0 [Edges] 0 {A214R:A -> A215R:U: adjacent_5p } 0 1 {A215R:U -> A214R:A: adjacent_3p } 0 2 {A214R:A -> A231R:A: pairing parallel trans I Ww/Ww } 0 3 {A231R:A -> A214R:A: pairing parallel trans I Ww/Ww } 0 4 {A215R:U -> A216R:A: adjacent_5p } 0 5 {A216R:A -> A215R:U: adjacent_3p } 0 6 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A216R:A -> A217R:A: adjacent_5p upward } 0 9 {A217R:A -> A216R:A: adjacent_3p downward } 0 10 {A217R:A -> A229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {A229R:C -> A217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {A229R:C -> A230R:G: adjacent_5p inward } 0 13 {A230R:G -> A229R:C: adjacent_3p inward } 0 14 {A230R:G -> A231R:A: adjacent_5p } 0 15 {A231R:A -> A230R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 B313R:C 0 1 B314R:A 0 2 B315R:U 0 3 B329R:C 0 4 B330R:G 0 5 B331R:A 0 6 B332R:G 0 [Edges] 0 {B313R:C -> B314R:A: adjacent_5p inward } 0 1 {B314R:A -> B313R:C: adjacent_3p inward } 0 2 {B313R:C -> B332R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B332R:G -> B313R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B314R:A -> B315R:U: adjacent_5p } 0 5 {B315R:U -> B314R:A: adjacent_3p } 0 6 {B314R:A -> B331R:A: pairing parallel trans I Ww/Ww } 0 7 {B331R:A -> B314R:A: pairing parallel trans I Ww/Ww } 0 8 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {B329R:C -> B330R:G: adjacent_5p inward } 0 11 {B330R:G -> B329R:C: adjacent_3p inward } 0 12 {B330R:G -> B331R:A: adjacent_5p } 0 13 {B331R:A -> B330R:G: adjacent_3p } 0 14 {B331R:A -> B332R:G: adjacent_5p upward } 0 15 {B332R:G -> B331R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 B317R:A 0 1 B318R:C 0 2 B319R:C 0 3 B326R:G 0 4 B327R:U 0 5 B328R:G 0 6 B329R:C 0 [Edges] 0 {B317R:A -> B318R:C: adjacent_5p upward } 0 1 {B318R:C -> B317R:A: adjacent_3p downward } 0 2 {B317R:A -> B329R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {B329R:C -> B317R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {B318R:C -> B319R:C: adjacent_5p upward } 0 5 {B319R:C -> B318R:C: adjacent_3p downward } 0 6 {B318R:C -> B328R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B328R:G -> B318R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B319R:C -> B326R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B326R:G -> B319R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B326R:G -> B327R:U: adjacent_5p } 0 11 {B327R:U -> B326R:G: adjacent_3p } 0 12 {B327R:U -> B328R:G: adjacent_5p } 0 13 {B328R:G -> B327R:U: adjacent_3p } 0 14 {B327R:U -> B329R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 15 {B329R:C -> B327R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 16 {B328R:G -> B329R:C: adjacent_5p upward } 0 17 {B329R:C -> B328R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 14 5 . 7 . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 B329R:C 0 1 B330R:G 0 2 B331R:A 0 3 B314R:A 0 4 B315R:U 0 5 B316R:A 0 6 B317R:A 0 [Edges] 0 {B314R:A -> B315R:U: adjacent_5p } 0 1 {B315R:U -> B314R:A: adjacent_3p } 0 2 {B314R:A -> B331R:A: pairing parallel trans I Ww/Ww } 0 3 {B331R:A -> B314R:A: pairing parallel trans I Ww/Ww } 0 4 {B315R:U -> B316R:A: adjacent_5p } 0 5 {B316R:A -> B315R:U: adjacent_3p } 0 6 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {B316R:A -> B317R:A: adjacent_5p upward } 0 9 {B317R:A -> B316R:A: adjacent_3p downward } 0 10 {B317R:A -> B329R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {B329R:C -> B317R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {B329R:C -> B330R:G: adjacent_5p inward } 0 13 {B330R:G -> B329R:C: adjacent_3p inward } 0 14 {B330R:G -> B331R:A: adjacent_5p } 0 15 {B331R:A -> B330R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 C413R:C 0 1 C414R:A 0 2 C415R:U 0 3 C429R:C 0 4 C430R:G 0 5 C431R:A 0 6 C432R:G 0 [Edges] 0 {C413R:C -> C414R:A: adjacent_5p inward } 0 1 {C414R:A -> C413R:C: adjacent_3p inward } 0 2 {C413R:C -> C432R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C432R:G -> C413R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C414R:A -> C415R:U: adjacent_5p } 0 5 {C415R:U -> C414R:A: adjacent_3p } 0 6 {C414R:A -> C431R:A: pairing parallel trans I Ww/Ww } 0 7 {C431R:A -> C414R:A: pairing parallel trans I Ww/Ww } 0 8 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {C429R:C -> C430R:G: adjacent_5p inward } 0 11 {C430R:G -> C429R:C: adjacent_3p inward } 0 12 {C430R:G -> C431R:A: adjacent_5p } 0 13 {C431R:A -> C430R:G: adjacent_3p } 0 14 {C431R:A -> C432R:G: adjacent_5p upward } 0 15 {C432R:G -> C431R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 C417R:A 0 1 C418R:C 0 2 C419R:C 0 3 C426R:G 0 4 C427R:U 0 5 C428R:G 0 6 C429R:C 0 [Edges] 0 {C417R:A -> C418R:C: adjacent_5p upward } 0 1 {C418R:C -> C417R:A: adjacent_3p downward } 0 2 {C417R:A -> C429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {C429R:C -> C417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {C418R:C -> C419R:C: adjacent_5p upward } 0 5 {C419R:C -> C418R:C: adjacent_3p downward } 0 6 {C418R:C -> C428R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C428R:G -> C418R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C419R:C -> C426R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {C426R:G -> C419R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {C426R:G -> C427R:U: adjacent_5p } 0 11 {C427R:U -> C426R:G: adjacent_3p } 0 12 {C427R:U -> C428R:G: adjacent_5p } 0 13 {C428R:G -> C427R:U: adjacent_3p } 0 14 {C427R:U -> C429R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 15 {C429R:C -> C427R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 16 {C428R:G -> C429R:C: adjacent_5p upward } 0 17 {C429R:C -> C428R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 14 5 . 7 . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 C429R:C 0 1 C430R:G 0 2 C431R:A 0 3 C414R:A 0 4 C415R:U 0 5 C416R:A 0 6 C417R:A 0 [Edges] 0 {C414R:A -> C415R:U: adjacent_5p } 0 1 {C415R:U -> C414R:A: adjacent_3p } 0 2 {C414R:A -> C431R:A: pairing parallel trans I Ww/Ww } 0 3 {C431R:A -> C414R:A: pairing parallel trans I Ww/Ww } 0 4 {C415R:U -> C416R:A: adjacent_5p } 0 5 {C416R:A -> C415R:U: adjacent_3p } 0 6 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C416R:A -> C417R:A: adjacent_5p upward } 0 9 {C417R:A -> C416R:A: adjacent_3p downward } 0 10 {C417R:A -> C429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {C429R:C -> C417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {C429R:C -> C430R:G: adjacent_5p inward } 0 13 {C430R:G -> C429R:C: adjacent_3p inward } 0 14 {C430R:G -> C431R:A: adjacent_5p } 0 15 {C431R:A -> C430R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 D513R:C 0 1 D514R:A 0 2 D515R:U 0 3 D529R:C 0 4 D530R:G 0 5 D531R:A 0 6 D532R:G 0 [Edges] 0 {D513R:C -> D514R:A: adjacent_5p inward } 0 1 {D514R:A -> D513R:C: adjacent_3p inward } 0 2 {D513R:C -> D532R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D532R:G -> D513R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D514R:A -> D515R:U: adjacent_5p } 0 5 {D515R:U -> D514R:A: adjacent_3p } 0 6 {D514R:A -> D531R:A: pairing parallel trans I Ww/Ww } 0 7 {D531R:A -> D514R:A: pairing parallel trans I Ww/Ww } 0 8 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {D529R:C -> D530R:G: adjacent_5p inward } 0 11 {D530R:G -> D529R:C: adjacent_3p inward } 0 12 {D530R:G -> D531R:A: adjacent_5p } 0 13 {D531R:A -> D530R:G: adjacent_3p } 0 14 {D531R:A -> D532R:G: adjacent_5p upward } 0 15 {D532R:G -> D531R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 D517R:A 0 1 D518R:C 0 2 D519R:C 0 3 D526R:G 0 4 D527R:U 0 5 D528R:G 0 6 D529R:C 0 [Edges] 0 {D517R:A -> D518R:C: adjacent_5p upward } 0 1 {D518R:C -> D517R:A: adjacent_3p downward } 0 2 {D517R:A -> D529R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {D529R:C -> D517R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {D518R:C -> D519R:C: adjacent_5p upward } 0 5 {D519R:C -> D518R:C: adjacent_3p downward } 0 6 {D518R:C -> D528R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D528R:G -> D518R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D519R:C -> D526R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D526R:G -> D519R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D526R:G -> D527R:U: adjacent_5p } 0 11 {D527R:U -> D526R:G: adjacent_3p } 0 12 {D527R:U -> D528R:G: adjacent_5p } 0 13 {D528R:G -> D527R:U: adjacent_3p } 0 14 {D528R:G -> D529R:C: adjacent_5p upward } 0 15 {D529R:C -> D528R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 D529R:C 0 1 D530R:G 0 2 D531R:A 0 3 D514R:A 0 4 D515R:U 0 5 D516R:A 0 6 D517R:A 0 [Edges] 0 {D514R:A -> D515R:U: adjacent_5p } 0 1 {D515R:U -> D514R:A: adjacent_3p } 0 2 {D514R:A -> D531R:A: pairing parallel trans I Ww/Ww } 0 3 {D531R:A -> D514R:A: pairing parallel trans I Ww/Ww } 0 4 {D515R:U -> D516R:A: adjacent_5p } 0 5 {D516R:A -> D515R:U: adjacent_3p } 0 6 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {D516R:A -> D517R:A: adjacent_5p upward } 0 9 {D517R:A -> D516R:A: adjacent_3p downward } 0 10 {D517R:A -> D529R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {D529R:C -> D517R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {D529R:C -> D530R:G: adjacent_5p inward } 0 13 {D530R:G -> D529R:C: adjacent_3p inward } 0 14 {D530R:G -> D531R:A: adjacent_5p } 0 15 {D531R:A -> D530R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 E113R:C 0 1 E114R:A 0 2 E115R:U 0 3 E129R:C 0 4 E130R:G 0 5 E131R:A 0 6 E132R:G 0 [Edges] 0 {E113R:C -> E114R:A: adjacent_5p inward } 0 1 {E114R:A -> E113R:C: adjacent_3p inward } 0 2 {E113R:C -> E132R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E132R:G -> E113R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E114R:A -> E115R:U: adjacent_5p } 0 5 {E115R:U -> E114R:A: adjacent_3p } 0 6 {E114R:A -> E131R:A: pairing parallel trans I Ww/Ww } 0 7 {E131R:A -> E114R:A: pairing parallel trans I Ww/Ww } 0 8 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {E129R:C -> E130R:G: adjacent_5p inward } 0 11 {E130R:G -> E129R:C: adjacent_3p inward } 0 12 {E130R:G -> E131R:A: adjacent_5p } 0 13 {E131R:A -> E130R:G: adjacent_3p } 0 14 {E131R:A -> E132R:G: adjacent_5p upward } 0 15 {E132R:G -> E131R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E117R:A 0 1 E118R:C 0 2 E119R:C 0 3 E126R:G 0 4 E127R:U 0 5 E128R:G 0 6 E129R:C 0 [Edges] 0 {E117R:A -> E118R:C: adjacent_5p upward } 0 1 {E118R:C -> E117R:A: adjacent_3p downward } 0 2 {E117R:A -> E129R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {E129R:C -> E117R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {E118R:C -> E119R:C: adjacent_5p upward } 0 5 {E119R:C -> E118R:C: adjacent_3p downward } 0 6 {E118R:C -> E128R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E128R:G -> E118R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E119R:C -> E126R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {E126R:G -> E119R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {E126R:G -> E127R:U: adjacent_5p } 0 11 {E127R:U -> E126R:G: adjacent_3p } 0 12 {E127R:U -> E128R:G: adjacent_5p } 0 13 {E128R:G -> E127R:U: adjacent_3p } 0 14 {E128R:G -> E129R:C: adjacent_5p upward } 0 15 {E129R:C -> E128R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E129R:C 0 1 E130R:G 0 2 E131R:A 0 3 E114R:A 0 4 E115R:U 0 5 E116R:A 0 6 E117R:A 0 [Edges] 0 {E114R:A -> E115R:U: adjacent_5p } 0 1 {E115R:U -> E114R:A: adjacent_3p } 0 2 {E114R:A -> E131R:A: pairing parallel trans I Ww/Ww } 0 3 {E131R:A -> E114R:A: pairing parallel trans I Ww/Ww } 0 4 {E115R:U -> E116R:A: adjacent_5p } 0 5 {E116R:A -> E115R:U: adjacent_3p } 0 6 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {E116R:A -> E117R:A: adjacent_5p upward } 0 9 {E117R:A -> E116R:A: adjacent_3p downward } 0 10 {E117R:A -> E129R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 11 {E129R:C -> E117R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 12 {E129R:C -> E130R:G: adjacent_5p inward } 0 13 {E130R:G -> E129R:C: adjacent_3p inward } 0 14 {E130R:G -> E131R:A: adjacent_5p } 0 15 {E131R:A -> E130R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . 7 . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:A 0 2 B8R:G 0 3 B10R:C 0 4 B11R:G 0 5 B12R:U 0 6 B13R:C 0 [Edges] 0 {B6R:G -> B7R:A: adjacent_5p upward } 0 1 {B7R:A -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:A -> B8R:G: adjacent_5p upward } 0 5 {B8R:G -> B7R:A: adjacent_3p downward } 0 6 {B7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B8R:G -> B10R:C: pairing antiparallel trans one_hbond Ss/Hh } 0 9 {B10R:C -> B8R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 10 {B8R:G -> B11R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 11 {B11R:G -> B8R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 12 {B10R:C -> B11R:G: adjacent_5p upward } 0 13 {B11R:G -> B10R:C: adjacent_3p downward } 0 14 {B11R:G -> B12R:U: adjacent_5p } 0 15 {B12R:U -> B11R:G: adjacent_3p } 0 16 {B12R:U -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . . 11 13 . 14 . 5 . 7 . . 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 B203R:C 0 1 B204R:G 0 2 B205R:A 0 3 B214R:U 0 4 B215R:A 0 5 B216R:C 0 6 B217R:G 0 [Edges] 0 {B203R:C -> B204R:G: adjacent_5p } 0 1 {B204R:G -> B203R:C: adjacent_3p } 0 2 {B203R:C -> B217R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B217R:G -> B203R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B204R:G -> B205R:A: adjacent_5p upward } 0 5 {B205R:A -> B204R:G: adjacent_3p downward } 0 6 {B204R:G -> B216R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B216R:C -> B204R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B205R:A -> B214R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 9 {B214R:U -> B205R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 10 {B205R:A -> B215R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 11 {B215R:A -> B205R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 12 {B214R:U -> B215R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {B215R:A -> B214R:U: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {B215R:A -> B216R:C: adjacent_5p upward } 0 15 {B216R:C -> B215R:A: adjacent_3p downward } 0 16 {B216R:C -> B217R:G: adjacent_5p } 0 17 {B217R:G -> B216R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . . 11 13 . 14 . 5 . 7 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 B204R:G 0 1 B205R:A 0 2 B206R:C 0 3 B213R:G 0 4 B214R:U 0 5 B215R:A 0 6 B216R:C 0 [Edges] 0 {B204R:G -> B205R:A: adjacent_5p upward } 0 1 {B205R:A -> B204R:G: adjacent_3p downward } 0 2 {B204R:G -> B216R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B216R:C -> B204R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B205R:A -> B206R:C: adjacent_5p upward } 0 5 {B206R:C -> B205R:A: adjacent_3p downward } 0 6 {B205R:A -> B214R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 7 {B214R:U -> B205R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 8 {B205R:A -> B215R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 9 {B215R:A -> B205R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 10 {B206R:C -> B213R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B213R:G -> B206R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B213R:G -> B214R:U: adjacent_5p } 0 13 {B214R:U -> B213R:G: adjacent_3p } 0 14 {B214R:U -> B215R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {B215R:A -> B214R:U: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 16 {B215R:A -> B216R:C: adjacent_5p upward } 0 17 {B216R:C -> B215R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . 9 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 B205R:A 0 1 B206R:C 0 2 B207R:U 0 3 B212R:A 0 4 B213R:G 0 5 B214R:U 0 6 B215R:A 0 [Edges] 0 {B205R:A -> B206R:C: adjacent_5p upward } 0 1 {B206R:C -> B205R:A: adjacent_3p downward } 0 2 {B205R:A -> B214R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 3 {B214R:U -> B205R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 4 {B205R:A -> B215R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 5 {B215R:A -> B205R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 6 {B206R:C -> B207R:U: adjacent_5p upward } 0 7 {B207R:U -> B206R:C: adjacent_3p downward } 0 8 {B206R:C -> B213R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B213R:G -> B206R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B207R:U -> B212R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B212R:A -> B207R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B212R:A -> B213R:G: adjacent_5p upward } 0 13 {B213R:G -> B212R:A: adjacent_3p downward } 0 14 {B213R:G -> B214R:U: adjacent_5p } 0 15 {B214R:U -> B213R:G: adjacent_3p } 0 16 {B214R:U -> B215R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 17 {B215R:A -> B214R:U: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . 8 . . 2 . 7 . 10 . . . 3 . . 11 . 12 . . 4 . 9 . 13 . 14 . 5 3 . . . 15 . 16 6 5 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A23R:C 0 3 A5R:G 0 4 A6R:U 0 5 A7R:C 0 6 A8R:C 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:U: adjacent_3p } 0 6 {A7R:C -> A8R:C: adjacent_5p } 0 7 {A8R:C -> A7R:C: adjacent_3p } 0 8 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:G -> A22R:G: adjacent_5p } 0 13 {A22R:G -> A21R:G: adjacent_3p } 0 14 {A22R:G -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:C 0 2 A24R:U 0 3 A4R:A 0 4 A5R:G 0 5 A6R:U 0 6 A7R:C 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p } 0 9 {A7R:C -> A6R:U: adjacent_3p } 0 10 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:G -> A23R:C: adjacent_5p upward } 0 13 {A23R:C -> A22R:G: adjacent_3p downward } 0 14 {A23R:C -> A24R:U: adjacent_5p upward } 0 15 {A24R:U -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:G 0 2 A22R:G 0 3 A6R:U 0 4 A7R:U 0 5 A8R:C 0 6 A9R:G 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A22R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A7R:U -> A8R:C: adjacent_5p } 0 5 {A8R:C -> A7R:U: adjacent_3p } 0 6 {A8R:C -> A9R:G: adjacent_5p } 0 7 {A9R:G -> A8R:C: adjacent_3p } 0 8 {A8R:C -> A21R:G: pairing antiparallel cis Ww/Ww } 0 9 {A21R:G -> A8R:C: pairing antiparallel cis Ww/Ww } 0 10 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A21R:G: outward } 0 13 {A21R:G -> A9R:G: outward } 0 14 {A20R:C -> A21R:G: adjacent_5p pairing parallel cis one_hbond Wh/Hw } 0 15 {A21R:G -> A20R:C: adjacent_3p pairing parallel cis one_hbond Hw/Wh } 0 16 {A21R:G -> A22R:G: adjacent_5p } 0 17 {A22R:G -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . . 9 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 12 . . . 7 . [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A23R:C 0 3 A5R:G 0 4 A6R:U 0 5 A7R:U 0 6 A8R:C 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A22R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A7R:U -> A8R:C: adjacent_5p } 0 9 {A8R:C -> A7R:U: adjacent_3p } 0 10 {A8R:C -> A21R:G: pairing antiparallel cis Ww/Ww } 0 11 {A21R:G -> A8R:C: pairing antiparallel cis Ww/Ww } 0 12 {A21R:G -> A22R:G: adjacent_5p } 0 13 {A22R:G -> A21R:G: adjacent_3p } 0 14 {A22R:G -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:A 0 2 A24R:A 0 3 A6R:A 0 4 A7R:G 0 5 A8R:U 0 6 A9R:A 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:A: adjacent_3p } 0 2 {A6R:A -> A8R:U: outward } 0 3 {A8R:U -> A6R:A: outward } 0 4 {A6R:A -> A24R:A: pairing parallel trans II Hh/Hh } 0 5 {A24R:A -> A6R:A: pairing parallel trans II Hh/Hh } 0 6 {A7R:G -> A8R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A8R:U -> A7R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A7R:G -> A22R:G: inward } 0 9 {A22R:G -> A7R:G: inward } 0 10 {A8R:U -> A9R:A: adjacent_5p } 0 11 {A9R:A -> A8R:U: adjacent_3p } 0 12 {A8R:U -> A23R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A23R:A -> A8R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A9R:A -> A22R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {A22R:G -> A9R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A9R:A -> A23R:A: outward } 0 17 {A23R:A -> A9R:A: outward } 0 18 {A22R:G -> A23R:A: adjacent_5p } 0 19 {A23R:A -> A22R:G: adjacent_3p } 0 20 {A23R:A -> A24R:A: adjacent_5p upward } 0 21 {A24R:A -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:A 0 2 A25R:A 0 3 A5R:G 0 4 A6R:A 0 5 A7R:G 0 6 A8R:U 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p inward } 0 1 {A6R:A -> A5R:G: adjacent_3p inward } 0 2 {A5R:G -> A25R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 3 {A25R:A -> A5R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 4 {A6R:A -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:A: adjacent_3p } 0 6 {A6R:A -> A8R:U: outward } 0 7 {A8R:U -> A6R:A: outward } 0 8 {A6R:A -> A24R:A: pairing parallel trans II Hh/Hh } 0 9 {A24R:A -> A6R:A: pairing parallel trans II Hh/Hh } 0 10 {A7R:G -> A8R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A8R:U -> A7R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {A8R:U -> A23R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A23R:A -> A8R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A23R:A -> A24R:A: adjacent_5p upward } 0 15 {A24R:A -> A23R:A: adjacent_3p downward } 0 16 {A24R:A -> A25R:A: adjacent_5p upward } 0 17 {A25R:A -> A24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A2063R:U 0 1 A2064R:U 0 2 A2065R:C 0 3 A2080R:G 0 4 A2081R:A 0 5 A2082R:G 0 6 A2083R:A 0 [Edges] 0 {A2063R:U -> A2064R:U: adjacent_5p } 0 1 {A2064R:U -> A2063R:U: adjacent_3p } 0 2 {A2063R:U -> A2083R:A: pairing antiparallel cis 43 Ww/Ss } 0 3 {A2083R:A -> A2063R:U: pairing antiparallel cis 43 Ss/Ww } 0 4 {A2064R:U -> A2065R:C: adjacent_5p } 0 5 {A2065R:C -> A2064R:U: adjacent_3p } 0 6 {A2064R:U -> A2081R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2081R:A -> A2064R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2065R:C -> A2080R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2080R:G -> A2065R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2080R:G -> A2081R:A: adjacent_5p upward } 0 11 {A2081R:A -> A2080R:G: adjacent_3p downward } 0 12 {A2081R:A -> A2082R:G: adjacent_5p upward } 0 13 {A2082R:G -> A2081R:A: adjacent_3p downward } 0 14 {A2082R:G -> A2083R:A: adjacent_5p upward } 0 15 {A2083R:A -> A2082R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A2095R:A 0 1 A2096R:A 0 2 A2097R:G 0 3 A2647R:C 0 4 A2648R:U 0 5 A2649R:A 0 6 A2650R:U 0 [Edges] 0 {A2095R:A -> A2096R:A: adjacent_5p } 0 1 {A2096R:A -> A2095R:A: adjacent_3p } 0 2 {A2095R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2650R:U -> A2095R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2096R:A -> A2097R:G: adjacent_5p } 0 5 {A2097R:G -> A2096R:A: adjacent_3p } 0 6 {A2097R:G -> A2647R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A2647R:C -> A2097R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A2647R:C -> A2648R:U: adjacent_5p } 0 9 {A2648R:U -> A2647R:C: adjacent_3p } 0 10 {A2648R:U -> A2649R:A: adjacent_5p } 0 11 {A2649R:A -> A2648R:U: adjacent_3p } 0 12 {A2649R:A -> A2650R:U: adjacent_5p } 0 13 {A2650R:U -> A2649R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . [GraphModel] [Vertices] 0 A2121R:G 0 1 A2122R:C 0 2 A2123R:A 0 3 A2270R:G 0 4 A2271R:G 0 5 A2272R:G 0 6 A2273R:C 0 [Edges] 0 {A2121R:G -> A2122R:C: adjacent_5p upward } 0 1 {A2122R:C -> A2121R:G: adjacent_3p downward } 0 2 {A2121R:G -> A2273R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2273R:C -> A2121R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2122R:C -> A2123R:A: adjacent_5p } 0 5 {A2123R:A -> A2122R:C: adjacent_3p } 0 6 {A2122R:C -> A2272R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2272R:G -> A2122R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2123R:A -> A2270R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A2270R:G -> A2123R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A2123R:A -> A2272R:G: outward } 0 11 {A2272R:G -> A2123R:A: outward } 0 12 {A2270R:G -> A2271R:G: adjacent_5p } 0 13 {A2271R:G -> A2270R:G: adjacent_3p } 0 14 {A2271R:G -> A2272R:G: adjacent_5p } 0 15 {A2272R:G -> A2271R:G: adjacent_3p } 0 16 {A2272R:G -> A2273R:C: adjacent_5p upward } 0 17 {A2273R:C -> A2272R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . 10 . 3 . . 9 . 12 . . 4 . . . 13 . 14 . 5 . 7 11 . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A2122R:C 0 1 A2123R:A 0 2 A2124R:G 0 3 A2269R:C 0 4 A2270R:G 0 5 A2271R:G 0 6 A2272R:G 0 [Edges] 0 {A2122R:C -> A2123R:A: adjacent_5p } 0 1 {A2123R:A -> A2122R:C: adjacent_3p } 0 2 {A2122R:C -> A2272R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2272R:G -> A2122R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2123R:A -> A2124R:G: adjacent_5p upward } 0 5 {A2124R:G -> A2123R:A: adjacent_3p downward } 0 6 {A2123R:A -> A2270R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A2270R:G -> A2123R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A2123R:A -> A2272R:G: outward } 0 9 {A2272R:G -> A2123R:A: outward } 0 10 {A2124R:G -> A2269R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2269R:C -> A2124R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2269R:C -> A2270R:G: adjacent_5p upward } 0 13 {A2270R:G -> A2269R:C: adjacent_3p downward } 0 14 {A2270R:G -> A2271R:G: adjacent_5p } 0 15 {A2271R:G -> A2270R:G: adjacent_3p } 0 16 {A2271R:G -> A2272R:G: adjacent_5p } 0 17 {A2272R:G -> A2271R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . . . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 A2256R:G 0 1 A2257R:G 0 2 A2258R:A 0 3 A2242R:U 0 4 A2243R:C 0 5 A2244R:A 0 6 A2245R:C 0 [Edges] 0 {A2242R:U -> A2243R:C: adjacent_5p } 0 1 {A2243R:C -> A2242R:U: adjacent_3p } 0 2 {A2242R:U -> A2257R:G: inward } 0 3 {A2257R:G -> A2242R:U: inward } 0 4 {A2242R:U -> A2258R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A2258R:A -> A2242R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A2243R:C -> A2244R:A: adjacent_5p } 0 7 {A2244R:A -> A2243R:C: adjacent_3p } 0 8 {A2244R:A -> A2245R:C: adjacent_5p upward } 0 9 {A2245R:C -> A2244R:A: adjacent_3p downward } 0 10 {A2244R:A -> A2257R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A2257R:G -> A2244R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A2244R:A -> A2258R:A: outward } 0 13 {A2258R:A -> A2244R:A: outward } 0 14 {A2245R:C -> A2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2256R:G -> A2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2256R:G -> A2257R:G: adjacent_5p upward } 0 17 {A2257R:G -> A2256R:G: adjacent_3p downward } 0 18 {A2257R:G -> A2258R:A: adjacent_5p } 0 19 {A2258R:A -> A2257R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 3 . 11 . 2 . 19 . 5 . 13 . 3 . 2 4 . 0 . . 4 . . . 1 . 6 . 5 . 10 12 . 7 . 8 6 14 . . . . 9 . [GraphModel] [Vertices] 0 A2297R:U 0 1 A2298R:C 0 2 A2299R:G 0 3 A2308R:U 0 4 A2309R:C 0 5 A2310R:G 0 6 A2311R:A 0 [Edges] 0 {A2297R:U -> A2298R:C: adjacent_5p upward } 0 1 {A2298R:C -> A2297R:U: adjacent_3p downward } 0 2 {A2297R:U -> A2311R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2311R:A -> A2297R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2298R:C -> A2299R:G: adjacent_5p upward } 0 5 {A2299R:G -> A2298R:C: adjacent_3p downward } 0 6 {A2298R:C -> A2310R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2310R:G -> A2298R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2299R:G -> A2308R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 9 {A2308R:U -> A2299R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 10 {A2308R:U -> A2309R:C: adjacent_5p } 0 11 {A2309R:C -> A2308R:U: adjacent_3p } 0 12 {A2309R:C -> A2310R:G: adjacent_5p } 0 13 {A2310R:G -> A2309R:C: adjacent_3p } 0 14 {A2310R:G -> A2311R:A: adjacent_5p upward } 0 15 {A2311R:A -> A2310R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A2298R:C 0 1 A2299R:G 0 2 A2300R:A 0 3 A2307R:A 0 4 A2308R:U 0 5 A2309R:C 0 6 A2310R:G 0 [Edges] 0 {A2298R:C -> A2299R:G: adjacent_5p upward } 0 1 {A2299R:G -> A2298R:C: adjacent_3p downward } 0 2 {A2298R:C -> A2310R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2310R:G -> A2298R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2299R:G -> A2300R:A: adjacent_5p inward } 0 5 {A2300R:A -> A2299R:G: adjacent_3p inward } 0 6 {A2299R:G -> A2308R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 7 {A2308R:U -> A2299R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 8 {A2300R:A -> A2307R:A: pairing parallel trans II Hh/Hh } 0 9 {A2307R:A -> A2300R:A: pairing parallel trans II Hh/Hh } 0 10 {A2307R:A -> A2308R:U: adjacent_5p upward } 0 11 {A2308R:U -> A2307R:A: adjacent_3p downward } 0 12 {A2308R:U -> A2309R:C: adjacent_5p } 0 13 {A2309R:C -> A2308R:U: adjacent_3p } 0 14 {A2309R:C -> A2310R:G: adjacent_5p } 0 15 {A2310R:G -> A2309R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A2321R:A 0 1 A2322R:U 0 2 A2323R:G 0 3 A2377R:U 0 4 A2378R:U 0 5 A2379R:G 0 6 A2380R:A 0 [Edges] 0 {A2321R:A -> A2322R:U: adjacent_5p } 0 1 {A2322R:U -> A2321R:A: adjacent_3p } 0 2 {A2321R:A -> A2323R:G: outward } 0 3 {A2323R:G -> A2321R:A: outward } 0 4 {A2321R:A -> A2378R:U: pairing parallel trans XXI Ww/Ws } 0 5 {A2378R:U -> A2321R:A: pairing parallel trans XXI Ws/Ww } 0 6 {A2321R:A -> A2380R:A: pairing parallel trans II Hh/Hh } 0 7 {A2380R:A -> A2321R:A: pairing parallel trans II Hh/Hh } 0 8 {A2322R:U -> A2323R:G: adjacent_5p } 0 9 {A2323R:G -> A2322R:U: adjacent_3p } 0 10 {A2323R:G -> A2377R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A2377R:U -> A2323R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A2377R:U -> A2378R:U: adjacent_5p } 0 13 {A2378R:U -> A2377R:U: adjacent_3p } 0 14 {A2378R:U -> A2379R:G: adjacent_5p } 0 15 {A2379R:G -> A2378R:U: adjacent_3p } 0 16 {A2379R:G -> A2380R:A: adjacent_5p } 0 17 {A2380R:A -> A2379R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 2 . 4 . 6 1 1 . 8 . . . . 2 3 9 . 10 . . . 3 . . 11 . 12 . . 4 5 . . 13 . 14 . 5 . . . . 15 . 16 6 7 . . . . 17 . [GraphModel] [Vertices] 0 A2328R:U 0 1 A2329R:C 0 2 A2330R:U 0 3 A2369R:A 0 4 A2370R:A 0 5 A2371R:G 0 6 A2372R:A 0 [Edges] 0 {A2328R:U -> A2329R:C: adjacent_5p upward } 0 1 {A2329R:C -> A2328R:U: adjacent_3p downward } 0 2 {A2328R:U -> A2372R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2372R:A -> A2328R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2329R:C -> A2330R:U: adjacent_5p } 0 5 {A2330R:U -> A2329R:C: adjacent_3p } 0 6 {A2329R:C -> A2371R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2371R:G -> A2329R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2330R:U -> A2369R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {A2369R:A -> A2330R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {A2369R:A -> A2370R:A: adjacent_5p } 0 11 {A2370R:A -> A2369R:A: adjacent_3p } 0 12 {A2369R:A -> A2371R:G: upward } 0 13 {A2371R:G -> A2369R:A: downward } 0 14 {A2370R:A -> A2371R:G: adjacent_5p } 0 15 {A2371R:G -> A2370R:A: adjacent_3p } 0 16 {A2371R:G -> A2372R:A: adjacent_5p upward } 0 17 {A2372R:A -> A2371R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A2376R:C 0 1 A2377R:U 0 2 A2378R:U 0 3 A2321R:A 0 4 A2322R:U 0 5 A2323R:G 0 6 A2324R:G 0 [Edges] 0 {A2321R:A -> A2322R:U: adjacent_5p } 0 1 {A2322R:U -> A2321R:A: adjacent_3p } 0 2 {A2321R:A -> A2323R:G: outward } 0 3 {A2323R:G -> A2321R:A: outward } 0 4 {A2321R:A -> A2378R:U: pairing parallel trans XXI Ww/Ws } 0 5 {A2378R:U -> A2321R:A: pairing parallel trans XXI Ws/Ww } 0 6 {A2322R:U -> A2323R:G: adjacent_5p } 0 7 {A2323R:G -> A2322R:U: adjacent_3p } 0 8 {A2323R:G -> A2324R:G: adjacent_5p upward } 0 9 {A2324R:G -> A2323R:G: adjacent_3p downward } 0 10 {A2323R:G -> A2377R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A2377R:U -> A2323R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A2324R:G -> A2376R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2376R:C -> A2324R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2376R:C -> A2377R:U: adjacent_5p upward } 0 15 {A2377R:U -> A2376R:C: adjacent_3p downward } 0 16 {A2377R:U -> A2378R:U: adjacent_5p } 0 17 {A2378R:U -> A2377R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A2406R:U 0 1 A2407R:G 0 2 A2408R:A 0 3 A2379R:G 0 4 A2380R:A 0 5 A2381R:C 0 6 A2382R:A 0 [Edges] 0 {A2379R:G -> A2380R:A: adjacent_5p } 0 1 {A2380R:A -> A2379R:G: adjacent_3p } 0 2 {A2379R:G -> A2381R:C: outward } 0 3 {A2381R:C -> A2379R:G: outward } 0 4 {A2379R:G -> A2408R:A: pairing parallel cis one_hbond Hw/Wh } 0 5 {A2408R:A -> A2379R:G: pairing parallel cis one_hbond Wh/Hw } 0 6 {A2380R:A -> A2381R:C: adjacent_5p } 0 7 {A2381R:C -> A2380R:A: adjacent_3p } 0 8 {A2381R:C -> A2382R:A: adjacent_5p } 0 9 {A2382R:A -> A2381R:C: adjacent_3p } 0 10 {A2381R:C -> A2407R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2407R:G -> A2381R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2382R:A -> A2406R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A2406R:U -> A2382R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A2382R:A -> A2407R:G: outward } 0 15 {A2407R:G -> A2382R:A: outward } 0 16 {A2406R:U -> A2407R:G: adjacent_5p } 0 17 {A2407R:G -> A2406R:U: adjacent_3p } 0 18 {A2407R:G -> A2408R:A: adjacent_5p upward } 0 19 {A2408R:A -> A2407R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 13 1 17 . 18 . . 11 15 2 . 19 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 14 . . . 9 . [GraphModel] [Vertices] 0 A2453R:G 0 1 A2454R:C 0 2 A2455R:A 0 3 A2436R:U 0 4 A2437R:A 0 5 A2438R:G 0 6 A2439R:C 0 [Edges] 0 {A2436R:U -> A2437R:A: adjacent_5p upward } 0 1 {A2437R:A -> A2436R:U: adjacent_3p downward } 0 2 {A2436R:U -> A2455R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2455R:A -> A2436R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2437R:A -> A2438R:G: adjacent_5p upward } 0 5 {A2438R:G -> A2437R:A: adjacent_3p downward } 0 6 {A2438R:G -> A2439R:C: adjacent_5p upward } 0 7 {A2439R:C -> A2438R:G: adjacent_3p downward } 0 8 {A2438R:G -> A2454R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2454R:C -> A2438R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2439R:C -> A2453R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2453R:G -> A2439R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2453R:G -> A2454R:C: adjacent_5p upward } 0 13 {A2454R:C -> A2453R:G: adjacent_3p downward } 0 14 {A2454R:C -> A2455R:A: adjacent_5p } 0 15 {A2455R:A -> A2454R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A2454R:C 0 1 A2455R:A 0 2 A2456R:A 0 3 A2435R:U 0 4 A2436R:U 0 5 A2437R:A 0 6 A2438R:G 0 [Edges] 0 {A2435R:U -> A2436R:U: adjacent_5p } 0 1 {A2436R:U -> A2435R:U: adjacent_3p } 0 2 {A2435R:U -> A2456R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2456R:A -> A2435R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2436R:U -> A2437R:A: adjacent_5p upward } 0 5 {A2437R:A -> A2436R:U: adjacent_3p downward } 0 6 {A2436R:U -> A2455R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2455R:A -> A2436R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2437R:A -> A2438R:G: adjacent_5p upward } 0 9 {A2438R:G -> A2437R:A: adjacent_3p downward } 0 10 {A2438R:G -> A2454R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2454R:C -> A2438R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2454R:C -> A2455R:A: adjacent_5p } 0 13 {A2455R:A -> A2454R:C: adjacent_3p } 0 14 {A2455R:A -> A2456R:A: adjacent_5p upward } 0 15 {A2456R:A -> A2455R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 A2459R:G 0 1 A2460R:A 0 2 A2461R:U 0 3 A2429R:A 0 4 A2430R:A 0 5 A2431R:C 0 6 A2432R:C 0 [Edges] 0 {A2429R:A -> A2430R:A: adjacent_5p upward } 0 1 {A2430R:A -> A2429R:A: adjacent_3p downward } 0 2 {A2429R:A -> A2461R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A2461R:U -> A2429R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A2430R:A -> A2431R:C: adjacent_5p upward } 0 5 {A2431R:C -> A2430R:A: adjacent_3p downward } 0 6 {A2431R:C -> A2432R:C: adjacent_5p upward } 0 7 {A2432R:C -> A2431R:C: adjacent_3p downward } 0 8 {A2432R:C -> A2459R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2459R:G -> A2432R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2459R:G -> A2460R:A: adjacent_5p } 0 11 {A2460R:A -> A2459R:G: adjacent_3p } 0 12 {A2460R:A -> A2461R:U: adjacent_5p upward } 0 13 {A2461R:U -> A2460R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 10 . . . . 9 1 11 . 12 . . . . 2 . 13 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 . . . . 7 . [GraphModel] [Vertices] 0 A2489R:G 0 1 A2490R:A 0 2 A2491R:G 0 3 A2530R:C 0 4 A2531R:U 0 5 A2532R:A 0 6 A2533R:C 0 [Edges] 0 {A2489R:G -> A2490R:A: adjacent_5p upward } 0 1 {A2490R:A -> A2489R:G: adjacent_3p downward } 0 2 {A2489R:G -> A2533R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2533R:C -> A2489R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2490R:A -> A2491R:G: adjacent_5p upward } 0 5 {A2491R:G -> A2490R:A: adjacent_3p downward } 0 6 {A2490R:A -> A2531R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2531R:U -> A2490R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2491R:G -> A2530R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2530R:C -> A2491R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2530R:C -> A2531R:U: adjacent_5p upward } 0 11 {A2531R:U -> A2530R:C: adjacent_3p downward } 0 12 {A2531R:U -> A2532R:A: adjacent_5p upward } 0 13 {A2532R:A -> A2531R:U: adjacent_3p downward } 0 14 {A2532R:A -> A2533R:C: adjacent_5p } 0 15 {A2533R:C -> A2532R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A2527R:U 0 1 A2528R:U 0 2 A2529R:G 0 3 A2492R:U 0 4 A2493R:C 0 5 A2494R:G 0 6 A2495R:U 0 [Edges] 0 {A2492R:U -> A2493R:C: adjacent_5p upward } 0 1 {A2493R:C -> A2492R:U: adjacent_3p downward } 0 2 {A2492R:U -> A2529R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2529R:G -> A2492R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2493R:C -> A2494R:G: adjacent_5p } 0 5 {A2494R:G -> A2493R:C: adjacent_3p } 0 6 {A2494R:G -> A2495R:U: adjacent_5p upward } 0 7 {A2495R:U -> A2494R:G: adjacent_3p downward } 0 8 {A2494R:G -> A2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A2528R:U -> A2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A2495R:U -> A2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {A2527R:U -> A2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {A2527R:U -> A2528R:U: adjacent_5p upward } 0 13 {A2528R:U -> A2527R:U: adjacent_3p downward } 0 14 {A2528R:U -> A2529R:G: adjacent_5p } 0 15 {A2529R:G -> A2528R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A2528R:U 0 1 A2529R:G 0 2 A2530R:C 0 3 A2491R:G 0 4 A2492R:U 0 5 A2493R:C 0 6 A2494R:G 0 [Edges] 0 {A2491R:G -> A2492R:U: adjacent_5p upward } 0 1 {A2492R:U -> A2491R:G: adjacent_3p downward } 0 2 {A2491R:G -> A2530R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2530R:C -> A2491R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2492R:U -> A2493R:C: adjacent_5p upward } 0 5 {A2493R:C -> A2492R:U: adjacent_3p downward } 0 6 {A2492R:U -> A2529R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A2529R:G -> A2492R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A2493R:C -> A2494R:G: adjacent_5p } 0 9 {A2494R:G -> A2493R:C: adjacent_3p } 0 10 {A2494R:G -> A2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A2528R:U -> A2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A2528R:U -> A2529R:G: adjacent_5p } 0 13 {A2529R:G -> A2528R:U: adjacent_3p } 0 14 {A2529R:G -> A2530R:C: adjacent_5p upward } 0 15 {A2530R:C -> A2529R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 A2575R:C 0 1 A2576R:A 0 2 A2577R:A 0 3 A2555R:C 0 4 A2556R:C 0 5 A2557R:U 0 6 A2558R:G 0 [Edges] 0 {A2555R:C -> A2556R:C: adjacent_5p } 0 1 {A2556R:C -> A2555R:C: adjacent_3p } 0 2 {A2555R:C -> A2577R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 3 {A2577R:A -> A2555R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 4 {A2556R:C -> A2557R:U: adjacent_5p upward } 0 5 {A2557R:U -> A2556R:C: adjacent_3p downward } 0 6 {A2557R:U -> A2558R:G: adjacent_5p } 0 7 {A2558R:G -> A2557R:U: adjacent_3p } 0 8 {A2558R:G -> A2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2575R:C -> A2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2575R:C -> A2576R:A: adjacent_5p upward } 0 11 {A2576R:A -> A2575R:C: adjacent_3p downward } 0 12 {A2576R:A -> A2577R:A: adjacent_5p } 0 13 {A2577R:A -> A2576R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 10 . . . . 9 1 11 . 12 . . . . 2 . 13 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 . . . . 7 . [GraphModel] [Vertices] 0 A2622R:A 0 1 A2623R:G 0 2 A2624R:A 0 3 A2640R:U 0 4 A2641R:C 0 5 A2642R:G 0 6 A2643R:G 0 [Edges] 0 {A2622R:A -> A2623R:G: adjacent_5p } 0 1 {A2623R:G -> A2622R:A: adjacent_3p } 0 2 {A2622R:A -> A2643R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2643R:G -> A2622R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2623R:G -> A2624R:A: adjacent_5p upward } 0 5 {A2624R:A -> A2623R:G: adjacent_3p downward } 0 6 {A2623R:G -> A2641R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2641R:C -> A2623R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2623R:G -> A2642R:G: outward } 0 9 {A2642R:G -> A2623R:G: outward } 0 10 {A2624R:A -> A2640R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2640R:U -> A2624R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2640R:U -> A2641R:C: adjacent_5p } 0 13 {A2641R:C -> A2640R:U: adjacent_3p } 0 14 {A2641R:C -> A2642R:G: adjacent_5p upward } 0 15 {A2642R:G -> A2641R:C: adjacent_3p downward } 0 16 {A2642R:G -> A2643R:G: adjacent_5p upward } 0 17 {A2643R:G -> A2642R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . 9 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A2650R:U 0 1 A2651R:C 0 2 A2652R:U 0 3 A2092R:G 0 4 A2093R:G 0 5 A2094R:G 0 6 A2095R:A 0 [Edges] 0 {A2092R:G -> A2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 1 {A2093R:G -> A2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 2 {A2092R:G -> A2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 3 {A2652R:U -> A2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 4 {A2093R:G -> A2094R:G: adjacent_5p upward } 0 5 {A2094R:G -> A2093R:G: adjacent_3p downward } 0 6 {A2093R:G -> A2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A2652R:U -> A2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A2094R:G -> A2095R:A: adjacent_5p upward } 0 9 {A2095R:A -> A2094R:G: adjacent_3p downward } 0 10 {A2094R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2651R:C -> A2094R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2095R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A2650R:U -> A2095R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A2650R:U -> A2651R:C: adjacent_5p } 0 15 {A2651R:C -> A2650R:U: adjacent_3p } 0 16 {A2651R:C -> A2652R:U: adjacent_5p upward } 0 17 {A2652R:U -> A2651R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 3 7 . . 3 . . 2 . 0 . . 4 . . 6 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A2651R:C 0 1 A2652R:U 0 2 A2653R:A 0 3 A2091R:G 0 4 A2092R:G 0 5 A2093R:G 0 6 A2094R:G 0 [Edges] 0 {A2091R:G -> A2092R:G: adjacent_5p upward } 0 1 {A2092R:G -> A2091R:G: adjacent_3p downward } 0 2 {A2091R:G -> A2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A2653R:A -> A2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A2092R:G -> A2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 5 {A2093R:G -> A2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 6 {A2092R:G -> A2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 7 {A2652R:U -> A2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 8 {A2093R:G -> A2094R:G: adjacent_5p upward } 0 9 {A2094R:G -> A2093R:G: adjacent_3p downward } 0 10 {A2093R:G -> A2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A2652R:U -> A2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A2094R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2651R:C -> A2094R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2651R:C -> A2652R:U: adjacent_5p upward } 0 15 {A2652R:U -> A2651R:C: adjacent_3p downward } 0 16 {A2652R:U -> A2653R:A: adjacent_5p upward } 0 17 {A2653R:A -> A2652R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 11 . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A2652R:U 0 1 A2653R:A 0 2 A2654R:C 0 3 A2090R:G 0 4 A2091R:G 0 5 A2092R:G 0 6 A2093R:G 0 [Edges] 0 {A2090R:G -> A2091R:G: adjacent_5p upward } 0 1 {A2091R:G -> A2090R:G: adjacent_3p downward } 0 2 {A2090R:G -> A2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2654R:C -> A2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2091R:G -> A2092R:G: adjacent_5p upward } 0 5 {A2092R:G -> A2091R:G: adjacent_3p downward } 0 6 {A2091R:G -> A2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A2653R:A -> A2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A2092R:G -> A2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 9 {A2093R:G -> A2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 10 {A2092R:G -> A2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 11 {A2652R:U -> A2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 12 {A2093R:G -> A2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A2652R:U -> A2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A2652R:U -> A2653R:A: adjacent_5p upward } 0 15 {A2653R:A -> A2652R:U: adjacent_3p downward } 0 16 {A2653R:A -> A2654R:C: adjacent_5p upward } 0 17 {A2654R:C -> A2653R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . 11 13 1 15 . 16 . 7 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 10 . . . 5 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 25R:A 0 1 26R:A 0 2 27R:G 0 3 9R:G 0 4 10R:G 0 5 11R:A 0 6 12R:U 0 [Edges] 0 {9R:G -> 10R:G: adjacent_5p } 0 1 {10R:G -> 9R:G: adjacent_3p } 0 2 {9R:G -> 27R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 3 {27R:G -> 9R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 4 {10R:G -> 11R:A: adjacent_5p } 0 5 {11R:A -> 10R:G: adjacent_3p } 0 6 {10R:G -> 12R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {12R:U -> 10R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {11R:A -> 12R:U: adjacent_5p } 0 9 {12R:U -> 11R:A: adjacent_3p } 0 10 {12R:U -> 25R:A: pairing antiparallel trans XXIV Ww/Hh } 0 11 {25R:A -> 12R:U: pairing antiparallel trans XXIV Hh/Ww } 0 12 {25R:A -> 26R:A: adjacent_5p upward } 0 13 {26R:A -> 25R:A: adjacent_3p downward } 0 14 {26R:A -> 27R:G: adjacent_5p upward } 0 15 {27R:G -> 26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 6 5 . . . . 5 . 8 6 10 . . . 7 9 . MOLECULE: [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:G 0 2 A12R:U 0 3 A16R:G 0 4 A17R:U 0 5 A18R:C 0 6 A19R:G 0 [Edges] 0 {A10R:U -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:U: adjacent_3p } 0 2 {A10R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A19R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A11R:G -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A19R:G: outward } 0 9 {A19R:G -> A11R:G: outward } 0 10 {A12R:U -> A16R:G: pairing parallel trans XXVII Ww/Ww } 0 11 {A16R:G -> A12R:U: pairing parallel trans XXVII Ww/Ww } 0 12 {A16R:G -> A17R:U: adjacent_5p } 0 13 {A17R:U -> A16R:G: adjacent_3p } 0 14 {A16R:G -> A18R:C: outward } 0 15 {A18R:C -> A16R:G: outward } 0 16 {A17R:U -> A18R:C: adjacent_5p } 0 17 {A18R:C -> A17R:U: adjacent_3p } 0 18 {A18R:C -> A19R:G: adjacent_5p } 0 19 {A19R:G -> A18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:A 0 2 A23R:A 0 3 A5R:A 0 4 A6R:G 0 5 A7R:U 0 6 A8R:A 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:A: adjacent_3p } 0 2 {A5R:A -> A7R:U: outward } 0 3 {A7R:U -> A5R:A: outward } 0 4 {A5R:A -> A23R:A: pairing parallel trans II Hh/Hh } 0 5 {A23R:A -> A5R:A: pairing parallel trans II Hh/Hh } 0 6 {A6R:G -> A7R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A7R:U -> A6R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A6R:G -> A21R:G: inward } 0 9 {A21R:G -> A6R:G: inward } 0 10 {A7R:U -> A8R:A: adjacent_5p upward } 0 11 {A8R:A -> A7R:U: adjacent_3p downward } 0 12 {A7R:U -> A22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A22R:A -> A7R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A8R:A -> A21R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {A21R:G -> A8R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A8R:A -> A22R:A: outward } 0 17 {A22R:A -> A8R:A: outward } 0 18 {A21R:G -> A22R:A: adjacent_5p } 0 19 {A22R:A -> A21R:G: adjacent_3p } 0 20 {A22R:A -> A23R:A: adjacent_5p upward } 0 21 {A23R:A -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 A22R:A 0 1 A23R:A 0 2 A24R:A 0 3 A4R:G 0 4 A5R:A 0 5 A6R:G 0 6 A7R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p inward } 0 1 {A5R:A -> A4R:G: adjacent_3p inward } 0 2 {A4R:G -> A24R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A24R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A5R:A -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:A: adjacent_3p } 0 6 {A5R:A -> A7R:U: outward } 0 7 {A7R:U -> A5R:A: outward } 0 8 {A5R:A -> A23R:A: pairing parallel trans II Hh/Hh } 0 9 {A23R:A -> A5R:A: pairing parallel trans II Hh/Hh } 0 10 {A6R:G -> A7R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A7R:U -> A6R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {A7R:U -> A22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A22R:A -> A7R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A22R:A -> A23R:A: adjacent_5p upward } 0 15 {A23R:A -> A22R:A: adjacent_3p downward } 0 16 {A23R:A -> A24R:A: adjacent_5p upward } 0 17 {A24R:A -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:G 0 2 A8R:C 0 3 A19R:G 0 4 A20R:A 0 5 A21R:A 0 6 A22R:G 0 [Edges] 0 {A6R:C -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p } 0 5 {A8R:C -> A7R:G: adjacent_3p } 0 6 {A8R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> A20R:A: adjacent_5p } 0 9 {A20R:A -> A19R:G: adjacent_3p } 0 10 {A20R:A -> A21R:A: adjacent_5p upward } 0 11 {A21R:A -> A20R:A: adjacent_3p downward } 0 12 {A21R:A -> A22R:G: adjacent_5p } 0 13 {A22R:G -> A21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 D656R:C 0 1 D657R:G 0 2 D658R:G 0 3 E747R:C 0 4 E748R:C 0 5 E749R:C 0 6 E750R:G 0 [Edges] 0 {D656R:C -> D657R:G: adjacent_5p upward } 0 1 {D657R:G -> D656R:C: adjacent_3p downward } 0 2 {D656R:C -> E750R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E750R:G -> D656R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D657R:G -> D658R:G: adjacent_5p upward } 0 5 {D658R:G -> D657R:G: adjacent_3p downward } 0 6 {D657R:G -> E749R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E749R:C -> D657R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D657R:G -> E750R:G: outward } 0 9 {E750R:G -> D657R:G: outward } 0 10 {D658R:G -> E747R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E747R:C -> D658R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E747R:C -> E748R:C: adjacent_5p upward } 0 13 {E748R:C -> E747R:C: adjacent_3p downward } 0 14 {E748R:C -> E749R:C: adjacent_5p } 0 15 {E749R:C -> E748R:C: adjacent_3p } 0 16 {E749R:C -> E750R:G: adjacent_5p } 0 17 {E750R:G -> E749R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 D657R:G 0 1 D658R:G 0 2 D659R:U 0 3 E746R:A 0 4 E747R:C 0 5 E748R:C 0 6 E749R:C 0 [Edges] 0 {D657R:G -> D658R:G: adjacent_5p upward } 0 1 {D658R:G -> D657R:G: adjacent_3p downward } 0 2 {D657R:G -> E749R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E749R:C -> D657R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D658R:G -> D659R:U: adjacent_5p upward } 0 5 {D659R:U -> D658R:G: adjacent_3p downward } 0 6 {D658R:G -> E747R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E747R:C -> D658R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D659R:U -> E746R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {E746R:A -> D659R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {E746R:A -> E747R:C: adjacent_5p upward } 0 11 {E747R:C -> E746R:A: adjacent_3p downward } 0 12 {E747R:C -> E748R:C: adjacent_5p upward } 0 13 {E748R:C -> E747R:C: adjacent_3p downward } 0 14 {E748R:C -> E749R:C: adjacent_5p } 0 15 {E749R:C -> E748R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E739R:C 0 1 E740R:U 0 2 E741R:G 0 3 D664R:G 0 4 D665R:A 0 5 D666R:G 0 6 D667R:G 0 [Edges] 0 {D664R:G -> D665R:A: adjacent_5p } 0 1 {D665R:A -> D664R:G: adjacent_3p } 0 2 {D664R:G -> E741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {E741R:G -> D664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {D665R:A -> D666R:G: adjacent_5p } 0 5 {D666R:G -> D665R:A: adjacent_3p } 0 6 {D666R:G -> D667R:G: adjacent_5p upward } 0 7 {D667R:G -> D666R:G: adjacent_3p downward } 0 8 {D666R:G -> E740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {E740R:U -> D666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {D666R:G -> E741R:G: outward } 0 11 {E741R:G -> D666R:G: outward } 0 12 {D667R:G -> E739R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E739R:C -> D667R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E739R:C -> E740R:U: adjacent_5p upward } 0 15 {E740R:U -> E739R:C: adjacent_3p downward } 0 16 {E740R:U -> E741R:G: adjacent_5p } 0 17 {E741R:G -> E740R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 E740R:U 0 1 E741R:G 0 2 E742R:G 0 3 D663R:A 0 4 D664R:G 0 5 D665R:A 0 6 D666R:G 0 [Edges] 0 {D663R:A -> D664R:G: adjacent_5p upward } 0 1 {D664R:G -> D663R:A: adjacent_3p downward } 0 2 {D663R:A -> E742R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {E742R:G -> D663R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {D664R:G -> D665R:A: adjacent_5p } 0 5 {D665R:A -> D664R:G: adjacent_3p } 0 6 {D664R:G -> E741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {E741R:G -> D664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {D665R:A -> D666R:G: adjacent_5p } 0 9 {D666R:G -> D665R:A: adjacent_3p } 0 10 {D666R:G -> E740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {E740R:U -> D666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {D666R:G -> E741R:G: outward } 0 13 {E741R:G -> D666R:G: outward } 0 14 {E740R:U -> E741R:G: adjacent_5p } 0 15 {E741R:G -> E740R:U: adjacent_3p } 0 16 {E741R:G -> E742R:G: adjacent_5p upward } 0 17 {E742R:G -> E741R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . [GraphModel] [Vertices] 0 E751R:U 0 1 E752R:G 0 2 E753R:A 0 3 D652R:U 0 4 D653R:A 0 5 D654R:G 0 6 D655R:A 0 [Edges] 0 {D652R:U -> D653R:A: adjacent_5p pairing antiparallel cis one_hbond Ss/C8 } 0 1 {D653R:A -> D652R:U: adjacent_3p pairing antiparallel cis one_hbond C8/Ss } 0 2 {D652R:U -> E752R:G: inward } 0 3 {E752R:G -> D652R:U: inward } 0 4 {D652R:U -> E753R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {E753R:A -> D652R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {D653R:A -> D654R:G: adjacent_5p } 0 7 {D654R:G -> D653R:A: adjacent_3p } 0 8 {D654R:G -> D655R:A: adjacent_5p upward } 0 9 {D655R:A -> D654R:G: adjacent_3p downward } 0 10 {D654R:G -> E752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 11 {E752R:G -> D654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 12 {D654R:G -> E753R:A: outward } 0 13 {E753R:A -> D654R:G: outward } 0 14 {D655R:A -> E751R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {E751R:U -> D655R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {E751R:U -> E752R:G: adjacent_5p upward } 0 17 {E752R:G -> E751R:U: adjacent_3p downward } 0 18 {E752R:G -> E753R:A: adjacent_5p } 0 19 {E753R:A -> E752R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 3 . 11 . 2 . 19 . 5 . 13 . 3 . 2 4 . 0 . . 4 . . . 1 . 6 . 5 . 10 12 . 7 . 8 6 14 . . . . 9 . [GraphModel] [Vertices] 0 I656R:C 0 1 I657R:G 0 2 I658R:G 0 3 J747R:C 0 4 J748R:C 0 5 J749R:C 0 6 J750R:G 0 [Edges] 0 {I656R:C -> I657R:G: adjacent_5p upward } 0 1 {I657R:G -> I656R:C: adjacent_3p downward } 0 2 {I656R:C -> J750R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {J750R:G -> I656R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {I657R:G -> I658R:G: adjacent_5p upward } 0 5 {I658R:G -> I657R:G: adjacent_3p downward } 0 6 {I657R:G -> J749R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J749R:C -> I657R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I657R:G -> J750R:G: outward } 0 9 {J750R:G -> I657R:G: outward } 0 10 {I658R:G -> J747R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J747R:C -> I658R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {J747R:C -> J748R:C: adjacent_5p upward } 0 13 {J748R:C -> J747R:C: adjacent_3p downward } 0 14 {J748R:C -> J749R:C: adjacent_5p } 0 15 {J749R:C -> J748R:C: adjacent_3p } 0 16 {J749R:C -> J750R:G: adjacent_5p } 0 17 {J750R:G -> J749R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 I657R:G 0 1 I658R:G 0 2 I659R:U 0 3 J746R:A 0 4 J747R:C 0 5 J748R:C 0 6 J749R:C 0 [Edges] 0 {I657R:G -> I658R:G: adjacent_5p upward } 0 1 {I658R:G -> I657R:G: adjacent_3p downward } 0 2 {I657R:G -> J749R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J749R:C -> I657R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I658R:G -> I659R:U: adjacent_5p upward } 0 5 {I659R:U -> I658R:G: adjacent_3p downward } 0 6 {I658R:G -> J747R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J747R:C -> I658R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I659R:U -> J746R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {J746R:A -> I659R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {J746R:A -> J747R:C: adjacent_5p upward } 0 11 {J747R:C -> J746R:A: adjacent_3p downward } 0 12 {J747R:C -> J748R:C: adjacent_5p upward } 0 13 {J748R:C -> J747R:C: adjacent_3p downward } 0 14 {J748R:C -> J749R:C: adjacent_5p } 0 15 {J749R:C -> J748R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 J739R:C 0 1 J740R:U 0 2 J741R:G 0 3 I664R:G 0 4 I665R:A 0 5 I666R:G 0 6 I667R:G 0 [Edges] 0 {I664R:G -> I665R:A: adjacent_5p } 0 1 {I665R:A -> I664R:G: adjacent_3p } 0 2 {I664R:G -> J741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {J741R:G -> I664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {I665R:A -> I666R:G: adjacent_5p } 0 5 {I666R:G -> I665R:A: adjacent_3p } 0 6 {I666R:G -> I667R:G: adjacent_5p upward } 0 7 {I667R:G -> I666R:G: adjacent_3p downward } 0 8 {I666R:G -> J740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {J740R:U -> I666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {I666R:G -> J741R:G: outward } 0 11 {J741R:G -> I666R:G: outward } 0 12 {I667R:G -> J739R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J739R:C -> I667R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {J739R:C -> J740R:U: adjacent_5p upward } 0 15 {J740R:U -> J739R:C: adjacent_3p downward } 0 16 {J740R:U -> J741R:G: adjacent_5p } 0 17 {J741R:G -> J740R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 J740R:U 0 1 J741R:G 0 2 J742R:G 0 3 I663R:A 0 4 I664R:G 0 5 I665R:A 0 6 I666R:G 0 [Edges] 0 {I663R:A -> I664R:G: adjacent_5p upward } 0 1 {I664R:G -> I663R:A: adjacent_3p downward } 0 2 {I663R:A -> J742R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {J742R:G -> I663R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {I664R:G -> I665R:A: adjacent_5p } 0 5 {I665R:A -> I664R:G: adjacent_3p } 0 6 {I664R:G -> J741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {J741R:G -> I664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {I665R:A -> I666R:G: adjacent_5p } 0 9 {I666R:G -> I665R:A: adjacent_3p } 0 10 {I666R:G -> J740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {J740R:U -> I666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {I666R:G -> J741R:G: outward } 0 13 {J741R:G -> I666R:G: outward } 0 14 {J740R:U -> J741R:G: adjacent_5p } 0 15 {J741R:G -> J740R:U: adjacent_3p } 0 16 {J741R:G -> J742R:G: adjacent_5p upward } 0 17 {J742R:G -> J741R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . [GraphModel] [Vertices] 0 J751R:U 0 1 J752R:G 0 2 J753R:A 0 3 I652R:U 0 4 I653R:A 0 5 I654R:G 0 6 I655R:A 0 [Edges] 0 {I652R:U -> I653R:A: adjacent_5p } 0 1 {I653R:A -> I652R:U: adjacent_3p } 0 2 {I652R:U -> J752R:G: inward } 0 3 {J752R:G -> I652R:U: inward } 0 4 {I652R:U -> J753R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {J753R:A -> I652R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {I653R:A -> I654R:G: adjacent_5p } 0 7 {I654R:G -> I653R:A: adjacent_3p } 0 8 {I654R:G -> I655R:A: adjacent_5p upward } 0 9 {I655R:A -> I654R:G: adjacent_3p downward } 0 10 {I654R:G -> J752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 11 {J752R:G -> I654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 12 {I654R:G -> J753R:A: outward } 0 13 {J753R:A -> I654R:G: outward } 0 14 {I655R:A -> J751R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {J751R:U -> I655R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {J751R:U -> J752R:G: adjacent_5p upward } 0 17 {J752R:G -> J751R:U: adjacent_3p downward } 0 18 {J752R:G -> J753R:A: adjacent_5p } 0 19 {J753R:A -> J752R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 3 . 11 . 2 . 19 . 5 . 13 . 3 . 2 4 . 0 . . 4 . . . 1 . 6 . 5 . 10 12 . 7 . 8 6 14 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A46R:G 0 1 A47R:G 0 2 A48R:G 0 3 A71R:G 0 4 A72R:U 0 5 A73R:A 0 6 A74R:C 0 [Edges] 0 {A46R:G -> A47R:G: adjacent_5p upward } 0 1 {A47R:G -> A46R:G: adjacent_3p downward } 0 2 {A46R:G -> A74R:C: pairing antiparallel cis Ww/Ww } 0 3 {A74R:C -> A46R:G: pairing antiparallel cis Ww/Ww } 0 4 {A47R:G -> A48R:G: adjacent_5p upward } 0 5 {A48R:G -> A47R:G: adjacent_3p downward } 0 6 {A47R:G -> A73R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A48R:G -> A71R:G: pairing parallel trans III Ww/Ww } 0 9 {A71R:G -> A48R:G: pairing parallel trans III Ww/Ww } 0 10 {A71R:G -> A72R:U: adjacent_5p } 0 11 {A72R:U -> A71R:G: adjacent_3p } 0 12 {A71R:G -> A73R:A: outward } 0 13 {A73R:A -> A71R:G: outward } 0 14 {A72R:U -> A73R:A: adjacent_5p } 0 15 {A73R:A -> A72R:U: adjacent_3p } 0 16 {A73R:A -> A74R:C: adjacent_5p upward } 0 17 {A74R:C -> A73R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A47R:G 0 1 A48R:G 0 2 A49R:C 0 3 A70R:G 0 4 A71R:G 0 5 A72R:U 0 6 A73R:A 0 [Edges] 0 {A47R:G -> A48R:G: adjacent_5p upward } 0 1 {A48R:G -> A47R:G: adjacent_3p downward } 0 2 {A47R:G -> A73R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A48R:G -> A49R:C: adjacent_5p upward } 0 5 {A49R:C -> A48R:G: adjacent_3p downward } 0 6 {A48R:G -> A71R:G: pairing parallel trans III Ww/Ww } 0 7 {A71R:G -> A48R:G: pairing parallel trans III Ww/Ww } 0 8 {A49R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A70R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A70R:G -> A71R:G: adjacent_5p inward } 0 11 {A71R:G -> A70R:G: adjacent_3p inward } 0 12 {A71R:G -> A72R:U: adjacent_5p } 0 13 {A72R:U -> A71R:G: adjacent_3p } 0 14 {A71R:G -> A73R:A: outward } 0 15 {A73R:A -> A71R:G: outward } 0 16 {A72R:U -> A73R:A: adjacent_5p } 0 17 {A73R:A -> A72R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A49R:C 0 1 A50R:G 0 2 A51R:C 0 3 A67R:G 0 4 A68R:A 0 5 A69R:C 0 6 A70R:G 0 [Edges] 0 {A49R:C -> A50R:G: adjacent_5p upward } 0 1 {A50R:G -> A49R:C: adjacent_3p downward } 0 2 {A49R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A70R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A50R:G -> A51R:C: adjacent_5p upward } 0 5 {A51R:C -> A50R:G: adjacent_3p downward } 0 6 {A50R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A50R:G -> A70R:G: outward } 0 9 {A70R:G -> A50R:G: outward } 0 10 {A51R:C -> A67R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A67R:G -> A68R:A: adjacent_5p } 0 13 {A68R:A -> A67R:G: adjacent_3p } 0 14 {A68R:A -> A69R:C: adjacent_5p } 0 15 {A69R:C -> A68R:A: adjacent_3p } 0 16 {A69R:C -> A70R:G: adjacent_5p } 0 17 {A70R:G -> A69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 A50R:G 0 1 A51R:C 0 2 A52R:A 0 3 A66R:U 0 4 A67R:G 0 5 A68R:A 0 6 A69R:C 0 [Edges] 0 {A50R:G -> A51R:C: adjacent_5p upward } 0 1 {A51R:C -> A50R:G: adjacent_3p downward } 0 2 {A50R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A51R:C -> A52R:A: adjacent_5p upward } 0 5 {A52R:A -> A51R:C: adjacent_3p downward } 0 6 {A51R:C -> A67R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A52R:A -> A66R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A66R:U -> A52R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A52R:A -> A67R:G: outward } 0 11 {A67R:G -> A52R:A: outward } 0 12 {A66R:U -> A67R:G: adjacent_5p upward } 0 13 {A67R:G -> A66R:U: adjacent_3p downward } 0 14 {A67R:G -> A68R:A: adjacent_5p } 0 15 {A68R:A -> A67R:G: adjacent_3p } 0 16 {A68R:A -> A69R:C: adjacent_5p } 0 17 {A69R:C -> A68R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A63R:G 0 1 A64R:G 0 2 A66R:U 0 3 A52R:A 0 4 A54R:C 0 5 A60R:U 0 6 A61R:U 0 [Edges] 0 {A52R:A -> A54R:C: adjacent_5p upward } 0 1 {A54R:C -> A52R:A: adjacent_3p downward } 0 2 {A52R:A -> A66R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A66R:U -> A52R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A54R:C -> A60R:U: adjacent_5p upward } 0 5 {A60R:U -> A54R:C: adjacent_3p downward } 0 6 {A54R:C -> A64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A64R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A60R:U -> A61R:U: adjacent_5p } 0 9 {A61R:U -> A60R:U: adjacent_3p } 0 10 {A61R:U -> A63R:G: pairing antiparallel cis one_hbond Hh/Hw } 0 11 {A63R:G -> A61R:U: pairing antiparallel cis one_hbond Hw/Hh } 0 12 {A63R:G -> A64R:G: adjacent_5p outward } 0 13 {A64R:G -> A63R:G: adjacent_3p outward } 0 14 {A64R:G -> A66R:U: adjacent_5p upward } 0 15 {A66R:U -> A64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 R13R:C 0 1 R14R:G 0 2 R15R:G 0 3 R5R:C 0 4 R6R:G 0 5 R7R:C 0 6 R8R:G 0 [Edges] 0 {R5R:C -> R6R:G: adjacent_5p } 0 1 {R6R:G -> R5R:C: adjacent_3p } 0 2 {R5R:C -> R7R:C: upward } 0 3 {R7R:C -> R5R:C: downward } 0 4 {R5R:C -> R15R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:G -> R7R:C: adjacent_5p } 0 7 {R7R:C -> R6R:G: adjacent_3p } 0 8 {R7R:C -> R8R:G: adjacent_5p } 0 9 {R8R:G -> R7R:C: adjacent_3p } 0 10 {R7R:C -> R14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R14R:G -> R7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R8R:G -> R13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R13R:C -> R8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R8R:G -> R14R:G: outward } 0 15 {R14R:G -> R8R:G: outward } 0 16 {R13R:C -> R14R:G: adjacent_5p } 0 17 {R14R:G -> R13R:C: adjacent_3p } 0 18 {R14R:G -> R15R:G: adjacent_5p upward } 0 19 {R15R:G -> R14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 13 1 17 . 18 . . 11 15 2 . 19 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 14 . . . 9 . [GraphModel] [Vertices] 0 R14R:G 0 1 R15R:G 0 2 R16R:A 0 3 R4R:U 0 4 R5R:C 0 5 R6R:G 0 6 R7R:C 0 [Edges] 0 {R4R:U -> R5R:C: adjacent_5p upward } 0 1 {R5R:C -> R4R:U: adjacent_3p downward } 0 2 {R4R:U -> R16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R16R:A -> R4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R5R:C -> R6R:G: adjacent_5p } 0 5 {R6R:G -> R5R:C: adjacent_3p } 0 6 {R5R:C -> R7R:C: upward } 0 7 {R7R:C -> R5R:C: downward } 0 8 {R5R:C -> R15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {R15R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {R6R:G -> R7R:C: adjacent_5p } 0 11 {R7R:C -> R6R:G: adjacent_3p } 0 12 {R7R:C -> R14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R14R:G -> R7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R14R:G -> R15R:G: adjacent_5p upward } 0 15 {R15R:G -> R14R:G: adjacent_3p downward } 0 16 {R15R:G -> R16R:A: adjacent_5p upward } 0 17 {R16R:A -> R15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 B13R:G 0 1 B14R:A 0 2 B15R:G 0 3 B20.AR:C 0 4 B20.BR:A 0 5 B21R:A 0 6 B22R:A 0 [Edges] 0 {B13R:G -> B14R:A: adjacent_5p } 0 1 {B14R:A -> B13R:G: adjacent_3p } 0 2 {B13R:G -> B22R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {B22R:A -> B13R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {B14R:A -> B15R:G: adjacent_5p upward } 0 5 {B15R:G -> B14R:A: adjacent_3p downward } 0 6 {B14R:A -> B21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 7 {B21R:A -> B14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 8 {B14R:A -> B22R:A: outward } 0 9 {B22R:A -> B14R:A: outward } 0 10 {B15R:G -> B20.AR:C: pairing parallel trans 119 Ss/Ww } 0 11 {B20.AR:C -> B15R:G: pairing parallel trans 119 Ww/Ss } 0 12 {B20.AR:C -> B20.BR:A: adjacent_5p } 0 13 {B20.BR:A -> B20.AR:C: adjacent_3p } 0 14 {B20.BR:A -> B21R:A: adjacent_5p } 0 15 {B21R:A -> B20.BR:A: adjacent_3p } 0 16 {B21R:A -> B22R:A: adjacent_5p } 0 17 {B22R:A -> B21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C27R:C 0 1 C28R:U 0 2 C29R:G 0 3 C9R:U 0 4 C10R:A 0 5 C11R:A 0 6 C12R:G 0 [Edges] 0 {C9R:U -> C10R:A: adjacent_5p upward } 0 1 {C10R:A -> C9R:U: adjacent_3p downward } 0 2 {C9R:U -> C29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C29R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C10R:A -> C11R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {C11R:A -> C10R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {C11R:A -> C12R:G: adjacent_5p upward } 0 7 {C12R:G -> C11R:A: adjacent_3p downward } 0 8 {C11R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C28R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C11R:A -> C29R:G: outward } 0 11 {C29R:G -> C11R:A: outward } 0 12 {C12R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C27R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C27R:C -> C28R:U: adjacent_5p upward } 0 15 {C28R:U -> C27R:C: adjacent_3p downward } 0 16 {C28R:U -> C29R:G: adjacent_5p upward } 0 17 {C29R:G -> C28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 C28R:U 0 1 C29R:G 0 2 C30R:C 0 3 C8R:G 0 4 C9R:U 0 5 C10R:A 0 6 C11R:A 0 [Edges] 0 {C8R:G -> C9R:U: adjacent_5p upward } 0 1 {C9R:U -> C8R:G: adjacent_3p downward } 0 2 {C8R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C30R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C9R:U -> C10R:A: adjacent_5p upward } 0 5 {C10R:A -> C9R:U: adjacent_3p downward } 0 6 {C9R:U -> C29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C29R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C10R:A -> C11R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {C11R:A -> C10R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 10 {C11R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C28R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C11R:A -> C29R:G: outward } 0 13 {C29R:G -> C11R:A: outward } 0 14 {C28R:U -> C29R:G: adjacent_5p upward } 0 15 {C29R:G -> C28R:U: adjacent_3p downward } 0 16 {C29R:G -> C30R:C: adjacent_5p upward } 0 17 {C30R:C -> C29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . [GraphModel] [Vertices] 0 D27R:C 0 1 D28R:U 0 2 D29R:G 0 3 D9R:U 0 4 D10R:A 0 5 D11R:A 0 6 D12R:G 0 [Edges] 0 {D9R:U -> D10R:A: adjacent_5p upward } 0 1 {D10R:A -> D9R:U: adjacent_3p downward } 0 2 {D9R:U -> D29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D29R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {D10R:A -> D11R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {D11R:A -> D10R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {D11R:A -> D12R:G: adjacent_5p upward } 0 7 {D12R:G -> D11R:A: adjacent_3p downward } 0 8 {D11R:A -> D28R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {D28R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {D11R:A -> D29R:G: outward } 0 11 {D29R:G -> D11R:A: outward } 0 12 {D12R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D27R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D27R:C -> D28R:U: adjacent_5p upward } 0 15 {D28R:U -> D27R:C: adjacent_3p downward } 0 16 {D28R:U -> D29R:G: adjacent_5p upward } 0 17 {D29R:G -> D28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 D28R:U 0 1 D29R:G 0 2 D30R:C 0 3 D8R:G 0 4 D9R:U 0 5 D10R:A 0 6 D11R:A 0 [Edges] 0 {D8R:G -> D9R:U: adjacent_5p upward } 0 1 {D9R:U -> D8R:G: adjacent_3p downward } 0 2 {D8R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D30R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D9R:U -> D10R:A: adjacent_5p upward } 0 5 {D10R:A -> D9R:U: adjacent_3p downward } 0 6 {D9R:U -> D29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {D29R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {D10R:A -> D11R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {D11R:A -> D10R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 10 {D11R:A -> D28R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D28R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D11R:A -> D29R:G: outward } 0 13 {D29R:G -> D11R:A: outward } 0 14 {D28R:U -> D29R:G: adjacent_5p upward } 0 15 {D29R:G -> D28R:U: adjacent_3p downward } 0 16 {D29R:G -> D30R:C: adjacent_5p upward } 0 17 {D30R:C -> D29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:G 0 3 A26R:G 0 4 A27R:U 0 5 A28R:A 0 6 A29R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:G: adjacent_3p } 0 2 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:G: adjacent_3p } 0 6 {A7R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A28R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A8R:G -> A26R:G: pairing parallel trans III Ww/Ww } 0 9 {A26R:G -> A8R:G: pairing parallel trans III Ww/Ww } 0 10 {A26R:G -> A27R:U: adjacent_5p } 0 11 {A27R:U -> A26R:G: adjacent_3p } 0 12 {A26R:G -> A28R:A: outward } 0 13 {A28R:A -> A26R:G: outward } 0 14 {A27R:U -> A28R:A: adjacent_5p } 0 15 {A28R:A -> A27R:U: adjacent_3p } 0 16 {A28R:A -> A29R:C: adjacent_5p upward } 0 17 {A29R:C -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:C 0 3 A25R:G 0 4 A26R:G 0 5 A27R:U 0 6 A28R:A 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p } 0 1 {A8R:G -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A28R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A8R:G -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A26R:G: pairing parallel trans III Ww/Ww } 0 7 {A26R:G -> A8R:G: pairing parallel trans III Ww/Ww } 0 8 {A9R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A25R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A25R:G -> A26R:G: adjacent_5p inward } 0 11 {A26R:G -> A25R:G: adjacent_3p inward } 0 12 {A26R:G -> A27R:U: adjacent_5p } 0 13 {A27R:U -> A26R:G: adjacent_3p } 0 14 {A26R:G -> A28R:A: outward } 0 15 {A28R:A -> A26R:G: outward } 0 16 {A27R:U -> A28R:A: adjacent_5p } 0 17 {A28R:A -> A27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:G 0 2 A11R:C 0 3 A22R:G 0 4 A23R:A 0 5 A24R:C 0 6 A25R:G 0 [Edges] 0 {A9R:C -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p } 0 5 {A11R:C -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> A25R:G: outward } 0 9 {A25R:G -> A10R:G: outward } 0 10 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:G -> A23R:A: adjacent_5p } 0 13 {A23R:A -> A22R:G: adjacent_3p } 0 14 {A22R:G -> A24R:C: upward } 0 15 {A24R:C -> A22R:G: downward } 0 16 {A23R:A -> A24R:C: adjacent_5p } 0 17 {A24R:C -> A23R:A: adjacent_3p } 0 18 {A24R:C -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:A 0 3 A21R:U 0 4 A22R:G 0 5 A23R:A 0 6 A24R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p } 0 1 {A11R:C -> A10R:G: adjacent_3p } 0 2 {A10R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:A: adjacent_5p upward } 0 5 {A12R:A -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A21R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A12R:A -> A22R:G: outward } 0 11 {A22R:G -> A12R:A: outward } 0 12 {A21R:U -> A22R:G: adjacent_5p } 0 13 {A22R:G -> A21R:U: adjacent_3p } 0 14 {A22R:G -> A23R:A: adjacent_5p } 0 15 {A23R:A -> A22R:G: adjacent_3p } 0 16 {A22R:G -> A24R:C: upward } 0 17 {A24R:C -> A22R:G: downward } 0 18 {A23R:A -> A24R:C: adjacent_5p } 0 19 {A24R:C -> A23R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . MOLECULE: [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:U 0 2 A10R:A 0 3 B4R:U 0 4 B5R:A 0 5 B6R:A 0 6 B7R:C 0 [Edges] 0 {A8R:G -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:U -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B6R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B4R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A10R:A -> B6R:A: outward } 0 11 {B6R:A -> A10R:A: outward } 0 12 {B4R:U -> B5R:A: adjacent_5p } 0 13 {B5R:A -> B4R:U: adjacent_3p } 0 14 {B5R:A -> B6R:A: adjacent_5p } 0 15 {B6R:A -> B5R:A: adjacent_3p } 0 16 {B6R:A -> B7R:C: adjacent_5p upward } 0 17 {B7R:C -> B6R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . 10 . 3 . . 9 . 12 . . 4 . . . 13 . 14 . 5 . 7 11 . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:A 0 2 A11R:G 0 3 B3R:C 0 4 B4R:U 0 5 B5R:A 0 6 B6R:A 0 [Edges] 0 {A9R:U -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B6R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:A -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:A -> B6R:A: outward } 0 9 {B6R:A -> A10R:A: outward } 0 10 {A11R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B3R:C -> B4R:U: adjacent_5p upward } 0 13 {B4R:U -> B3R:C: adjacent_3p downward } 0 14 {B4R:U -> B5R:A: adjacent_5p } 0 15 {B5R:A -> B4R:U: adjacent_3p } 0 16 {B5R:A -> B6R:A: adjacent_5p } 0 17 {B6R:A -> B5R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . . . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 B8R:G 0 1 B9R:U 0 2 B10R:A 0 3 A4R:U 0 4 A5R:A 0 5 A6R:A 0 6 A7R:C 0 [Edges] 0 {A4R:U -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:U: adjacent_3p } 0 2 {A4R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B10R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:A: adjacent_3p } 0 6 {A6R:A -> A7R:C: adjacent_5p upward } 0 7 {A7R:C -> A6R:A: adjacent_3p downward } 0 8 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A6R:A -> B10R:A: outward } 0 11 {B10R:A -> A6R:A: outward } 0 12 {A7R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B8R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B8R:G -> B9R:U: adjacent_5p upward } 0 15 {B9R:U -> B8R:G: adjacent_3p downward } 0 16 {B9R:U -> B10R:A: adjacent_5p upward } 0 17 {B10R:A -> B9R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 B9R:U 0 1 B10R:A 0 2 B11R:G 0 3 A3R:C 0 4 A4R:U 0 5 A5R:A 0 6 A6R:A 0 [Edges] 0 {A3R:C -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:U: adjacent_3p } 0 6 {A4R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B10R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:A: adjacent_5p } 0 9 {A6R:A -> A5R:A: adjacent_3p } 0 10 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> B10R:A: outward } 0 13 {B10R:A -> A6R:A: outward } 0 14 {B9R:U -> B10R:A: adjacent_5p upward } 0 15 {B10R:A -> B9R:U: adjacent_3p downward } 0 16 {B10R:A -> B11R:G: adjacent_5p upward } 0 17 {B11R:G -> B10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:A 0 3 A15R:A 0 4 A16R:G 0 5 A17R:U 0 6 A18R:A 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A18R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A18R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A6R:A -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A17R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {A17R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A6R:A -> A18R:A: outward } 0 9 {A18R:A -> A6R:A: outward } 0 10 {A7R:A -> A15R:A: pairing parallel trans II Hh/Hh } 0 11 {A15R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 12 {A15R:A -> A16R:G: adjacent_5p } 0 13 {A16R:G -> A15R:A: adjacent_3p } 0 14 {A15R:A -> A17R:U: outward } 0 15 {A17R:U -> A15R:A: outward } 0 16 {A16R:G -> A17R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {A17R:U -> A16R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 18 {A17R:U -> A18R:A: adjacent_5p } 0 19 {A18R:A -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B544R:C 0 1 B545R:A 0 2 B546R:U 0 3 B525R:A 0 4 B526R:C 0 5 B527R:G 0 6 B528R:G 0 [Edges] 0 {B525R:A -> B526R:C: adjacent_5p upward } 0 1 {B526R:C -> B525R:A: adjacent_3p downward } 0 2 {B525R:A -> B546R:U: pairing antiparallel trans one_hbond 52 Hw/Wh } 0 3 {B546R:U -> B525R:A: pairing antiparallel trans one_hbond 52 Wh/Hw } 0 4 {B526R:C -> B527R:G: adjacent_5p upward } 0 5 {B527R:G -> B526R:C: adjacent_3p downward } 0 6 {B527R:G -> B528R:G: adjacent_5p upward } 0 7 {B528R:G -> B527R:G: adjacent_3p downward } 0 8 {B527R:G -> B545R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {B545R:A -> B527R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {B528R:G -> B544R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B544R:C -> B528R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B528R:G -> B545R:A: outward } 0 13 {B545R:A -> B528R:G: outward } 0 14 {B544R:C -> B545R:A: adjacent_5p upward } 0 15 {B545R:A -> B544R:C: adjacent_3p downward } 0 16 {B545R:A -> B546R:U: adjacent_5p upward } 0 17 {B546R:U -> B545R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . . 9 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 12 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:U 0 2 A7R:U 0 3 A10R:A 0 4 A11R:A 0 5 A12R:A 0 6 A13R:U 0 [Edges] 0 {A5R:A -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A13R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> A10R:A: pairing antiparallel trans one_hbond Bs/Hw } 0 9 {A10R:A -> A7R:U: pairing antiparallel trans one_hbond Hw/Bs } 0 10 {A10R:A -> A11R:A: adjacent_5p upward } 0 11 {A11R:A -> A10R:A: adjacent_3p downward } 0 12 {A11R:A -> A12R:A: adjacent_5p } 0 13 {A12R:A -> A11R:A: adjacent_3p } 0 14 {A12R:A -> A13R:U: adjacent_5p upward } 0 15 {A13R:U -> A12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 F19R:G 0 1 F20R:A 0 2 F21R:A 0 3 C9R:A 0 4 C10R:G 0 5 C11R:U 0 6 C12R:A 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> F21R:A: pairing parallel trans II Hh/Hh } 0 5 {F21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C10R:G -> F19R:G: inward } 0 9 {F19R:G -> C10R:G: inward } 0 10 {C11R:U -> C12R:A: adjacent_5p upward } 0 11 {C12R:A -> C11R:U: adjacent_3p downward } 0 12 {C11R:U -> F20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {F20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {C12R:A -> F19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {F19R:G -> C12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {C12R:A -> F20R:A: outward } 0 17 {F20R:A -> C12R:A: outward } 0 18 {F19R:G -> F20R:A: adjacent_5p } 0 19 {F20R:A -> F19R:G: adjacent_3p } 0 20 {F20R:A -> F21R:A: adjacent_5p upward } 0 21 {F21R:A -> F20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 F20R:A 0 1 F21R:A 0 2 F22R:C 0 3 C8R:C 0 4 C9R:A 0 5 C10R:G 0 6 C11R:U 0 [Edges] 0 {C8R:C -> C9R:A: adjacent_5p inward } 0 1 {C9R:A -> C8R:C: adjacent_3p inward } 0 2 {C8R:C -> F22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {F22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {C9R:A -> C10R:G: adjacent_5p } 0 5 {C10R:G -> C9R:A: adjacent_3p } 0 6 {C9R:A -> C11R:U: outward } 0 7 {C11R:U -> C9R:A: outward } 0 8 {C9R:A -> F21R:A: pairing parallel trans II Hh/Hh } 0 9 {F21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 10 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {C11R:U -> F20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {F20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {F20R:A -> F21R:A: adjacent_5p upward } 0 15 {F21R:A -> F20R:A: adjacent_3p downward } 0 16 {F21R:A -> F22R:C: adjacent_5p upward } 0 17 {F22R:C -> F21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 D19R:G 0 1 D20R:A 0 2 D21R:A 0 3 D9R:A 0 4 D10R:G 0 5 D11R:U 0 6 D12R:A 0 [Edges] 0 {D9R:A -> D10R:G: adjacent_5p } 0 1 {D10R:G -> D9R:A: adjacent_3p } 0 2 {D9R:A -> D11R:U: outward } 0 3 {D11R:U -> D9R:A: outward } 0 4 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 5 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 6 {D10R:G -> D11R:U: adjacent_5p } 0 7 {D11R:U -> D10R:G: adjacent_3p } 0 8 {D10R:G -> D19R:G: inward } 0 9 {D19R:G -> D10R:G: inward } 0 10 {D11R:U -> D12R:A: adjacent_5p } 0 11 {D12R:A -> D11R:U: adjacent_3p } 0 12 {D11R:U -> D20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {D20R:A -> D11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {D12R:A -> D19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {D19R:G -> D12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {D12R:A -> D20R:A: outward } 0 17 {D20R:A -> D12R:A: outward } 0 18 {D19R:G -> D20R:A: adjacent_5p } 0 19 {D20R:A -> D19R:G: adjacent_3p } 0 20 {D20R:A -> D21R:A: adjacent_5p upward } 0 21 {D21R:A -> D20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 D20R:A 0 1 D21R:A 0 2 D22R:C 0 3 D8R:C 0 4 D9R:A 0 5 D10R:G 0 6 D11R:U 0 [Edges] 0 {D8R:C -> D9R:A: adjacent_5p inward } 0 1 {D9R:A -> D8R:C: adjacent_3p inward } 0 2 {D8R:C -> D22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {D22R:C -> D8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {D9R:A -> D10R:G: adjacent_5p } 0 5 {D10R:G -> D9R:A: adjacent_3p } 0 6 {D9R:A -> D11R:U: outward } 0 7 {D11R:U -> D9R:A: outward } 0 8 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 9 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 10 {D10R:G -> D11R:U: adjacent_5p } 0 11 {D11R:U -> D10R:G: adjacent_3p } 0 12 {D11R:U -> D20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {D20R:A -> D11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {D20R:A -> D21R:A: adjacent_5p upward } 0 15 {D21R:A -> D20R:A: adjacent_3p downward } 0 16 {D21R:A -> D22R:C: adjacent_5p upward } 0 17 {D22R:C -> D21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 C19R:G 0 1 C20R:A 0 2 C21R:A 0 3 C9R:A 0 4 C10R:G 0 5 C11R:U 0 6 C12R:A 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 5 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C10R:G -> C19R:G: inward } 0 9 {C19R:G -> C10R:G: inward } 0 10 {C11R:U -> C12R:A: adjacent_5p upward } 0 11 {C12R:A -> C11R:U: adjacent_3p downward } 0 12 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {C12R:A -> C19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {C19R:G -> C12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {C12R:A -> C20R:A: outward } 0 17 {C20R:A -> C12R:A: outward } 0 18 {C19R:G -> C20R:A: adjacent_5p } 0 19 {C20R:A -> C19R:G: adjacent_3p } 0 20 {C20R:A -> C21R:A: adjacent_5p upward } 0 21 {C21R:A -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:A 0 2 C22R:C 0 3 C8R:C 0 4 C9R:A 0 5 C10R:G 0 6 C11R:U 0 [Edges] 0 {C8R:C -> C9R:A: adjacent_5p inward } 0 1 {C9R:A -> C8R:C: adjacent_3p inward } 0 2 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {C9R:A -> C10R:G: adjacent_5p } 0 5 {C10R:G -> C9R:A: adjacent_3p } 0 6 {C9R:A -> C11R:U: outward } 0 7 {C11R:U -> C9R:A: outward } 0 8 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 9 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 10 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {C20R:A -> C21R:A: adjacent_5p upward } 0 15 {C21R:A -> C20R:A: adjacent_3p downward } 0 16 {C21R:A -> C22R:C: adjacent_5p upward } 0 17 {C22R:C -> C21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 D19R:G 0 1 D20R:A 0 2 D21R:A 0 3 D9R:A 0 4 D10R:G 0 5 D11R:U 0 6 D12R:A 0 [Edges] 0 {D9R:A -> D10R:G: adjacent_5p } 0 1 {D10R:G -> D9R:A: adjacent_3p } 0 2 {D9R:A -> D11R:U: outward } 0 3 {D11R:U -> D9R:A: outward } 0 4 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 5 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 6 {D10R:G -> D11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {D11R:U -> D10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {D10R:G -> D19R:G: inward } 0 9 {D19R:G -> D10R:G: inward } 0 10 {D11R:U -> D12R:A: adjacent_5p upward } 0 11 {D12R:A -> D11R:U: adjacent_3p downward } 0 12 {D11R:U -> D20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {D20R:A -> D11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {D12R:A -> D19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {D19R:G -> D12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {D12R:A -> D20R:A: outward } 0 17 {D20R:A -> D12R:A: outward } 0 18 {D19R:G -> D20R:A: adjacent_5p } 0 19 {D20R:A -> D19R:G: adjacent_3p } 0 20 {D20R:A -> D21R:A: adjacent_5p upward } 0 21 {D21R:A -> D20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 D20R:A 0 1 D21R:A 0 2 D22R:C 0 3 D8R:C 0 4 D9R:A 0 5 D10R:G 0 6 D11R:U 0 [Edges] 0 {D8R:C -> D9R:A: adjacent_5p inward } 0 1 {D9R:A -> D8R:C: adjacent_3p inward } 0 2 {D8R:C -> D22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {D22R:C -> D8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {D9R:A -> D10R:G: adjacent_5p } 0 5 {D10R:G -> D9R:A: adjacent_3p } 0 6 {D9R:A -> D11R:U: outward } 0 7 {D11R:U -> D9R:A: outward } 0 8 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 9 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 10 {D10R:G -> D11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {D11R:U -> D10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {D11R:U -> D20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {D20R:A -> D11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {D20R:A -> D21R:A: adjacent_5p upward } 0 15 {D21R:A -> D20R:A: adjacent_3p downward } 0 16 {D21R:A -> D22R:C: adjacent_5p upward } 0 17 {D22R:C -> D21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A21R:C 0 1 A22R:U 0 2 A23R:G 0 3 A9R:C 0 4 A10R:A 0 5 A11R:A 0 6 A12R:G 0 [Edges] 0 {A9R:C -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:A: adjacent_3p downward } 0 6 {A11R:A -> A12R:G: adjacent_5p upward } 0 7 {A12R:G -> A11R:A: adjacent_3p downward } 0 8 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A21R:C -> A22R:U: adjacent_5p } 0 11 {A22R:U -> A21R:C: adjacent_3p } 0 12 {A22R:U -> A23R:G: adjacent_5p } 0 13 {A23R:G -> A22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 10 . . . . 9 1 11 . 12 . . . . 2 . 13 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:C 0 2 A17R:C 0 3 A5R:G 0 4 A6R:U 0 5 A7R:G 0 6 A8R:C 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A7R:G: upward } 0 3 {A7R:G -> A5R:G: downward } 0 4 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A6R:U -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:U: adjacent_3p } 0 8 {A7R:G -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> A16R:C: adjacent_5p upward } 0 15 {A16R:C -> A15R:G: adjacent_3p downward } 0 16 {A16R:C -> A17R:C: adjacent_5p } 0 17 {A17R:C -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:C 0 2 A18R:C 0 3 A4R:G 0 4 A5R:G 0 5 A6R:U 0 6 A7R:G 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A7R:G: upward } 0 7 {A7R:G -> A5R:G: downward } 0 8 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A6R:U -> A7R:G: adjacent_5p } 0 11 {A7R:G -> A6R:U: adjacent_3p } 0 12 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:C -> A17R:C: adjacent_5p } 0 15 {A17R:C -> A16R:C: adjacent_3p } 0 16 {A17R:C -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:U 0 2 A7R:U 0 3 A9R:U 0 4 A10R:C 0 5 A11R:A 0 6 A12R:G 0 [Edges] 0 {A5R:C -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> A11R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A11R:A -> A6R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A7R:U -> A9R:U: pairing parallel cis one_hbond Ws/Hh } 0 9 {A9R:U -> A7R:U: pairing parallel cis one_hbond Hh/Ws } 0 10 {A9R:U -> A10R:C: adjacent_5p } 0 11 {A10R:C -> A9R:U: adjacent_3p } 0 12 {A9R:U -> A11R:A: outward } 0 13 {A11R:A -> A9R:U: outward } 0 14 {A10R:C -> A11R:A: adjacent_5p } 0 15 {A11R:A -> A10R:C: adjacent_3p } 0 16 {A11R:A -> A12R:G: adjacent_5p upward } 0 17 {A12R:G -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 B12R:U 0 4 B13R:A 0 5 B14R:C 0 6 B15R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B15R:G: outward } 0 9 {B15R:G -> A4R:G: outward } 0 10 {A5R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B12R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> B14R:C: outward } 0 13 {B14R:C -> A5R:A: outward } 0 14 {B12R:U -> B13R:A: adjacent_5p } 0 15 {B13R:A -> B12R:U: adjacent_3p } 0 16 {B13R:A -> B14R:C: adjacent_5p } 0 17 {B14R:C -> B13R:A: adjacent_3p } 0 18 {B14R:C -> B15R:G: adjacent_5p } 0 19 {B15R:G -> B14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . 12 . 3 . . 11 . 14 . . 4 . . . 15 . 16 . 5 . 7 13 . 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 B11R:G 0 4 B12R:U 0 5 B13R:A 0 6 B14R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> B14R:C: outward } 0 9 {B14R:C -> A5R:A: outward } 0 10 {A6R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B11R:G -> B12R:U: adjacent_5p upward } 0 13 {B12R:U -> B11R:G: adjacent_3p downward } 0 14 {B12R:U -> B13R:A: adjacent_5p } 0 15 {B13R:A -> B12R:U: adjacent_3p } 0 16 {B13R:A -> B14R:C: adjacent_5p } 0 17 {B14R:C -> B13R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . . . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 C23R:C 0 1 C24R:G 0 2 C25R:A 0 3 D32R:U 0 4 D33R:A 0 5 D34R:C 0 6 D35R:G 0 [Edges] 0 {C23R:C -> C24R:G: adjacent_5p upward } 0 1 {C24R:G -> C23R:C: adjacent_3p downward } 0 2 {C23R:C -> D35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D35R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C24R:G -> C25R:A: adjacent_5p upward } 0 5 {C25R:A -> C24R:G: adjacent_3p downward } 0 6 {C24R:G -> D34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D34R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C24R:G -> D35R:G: outward } 0 9 {D35R:G -> C24R:G: outward } 0 10 {C25R:A -> D32R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D32R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D32R:U -> D33R:A: adjacent_5p } 0 13 {D33R:A -> D32R:U: adjacent_3p } 0 14 {D33R:A -> D34R:C: adjacent_5p } 0 15 {D34R:C -> D33R:A: adjacent_3p } 0 16 {D34R:C -> D35R:G: adjacent_5p } 0 17 {D35R:G -> D34R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 C24R:G 0 1 C25R:A 0 2 C26R:C 0 3 D31R:G 0 4 D32R:U 0 5 D33R:A 0 6 D34R:C 0 [Edges] 0 {C24R:G -> C25R:A: adjacent_5p upward } 0 1 {C25R:A -> C24R:G: adjacent_3p downward } 0 2 {C24R:G -> D34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D34R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C25R:A -> C26R:C: adjacent_5p upward } 0 5 {C26R:C -> C25R:A: adjacent_3p downward } 0 6 {C25R:A -> D32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D32R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C26R:C -> D31R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D31R:G -> C26R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D31R:G -> D32R:U: adjacent_5p upward } 0 11 {D32R:U -> D31R:G: adjacent_3p downward } 0 12 {D32R:U -> D33R:A: adjacent_5p } 0 13 {D33R:A -> D32R:U: adjacent_3p } 0 14 {D33R:A -> D34R:C: adjacent_5p } 0 15 {D34R:C -> D33R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A20R:U 0 1 A21R:G 0 2 A22R:G 0 3 A12R:C 0 4 A13R:G 0 5 A14R:C 0 6 A15R:A 0 [Edges] 0 {A12R:C -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A22R:G: pairing antiparallel cis one_hbond Bh/Wh } 0 3 {A22R:G -> A12R:C: pairing antiparallel cis one_hbond Wh/Bh } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A14R:C -> A15R:A: adjacent_5p upward } 0 7 {A15R:A -> A14R:C: adjacent_3p downward } 0 8 {A14R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A21R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A15R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:A -> A21R:G: outward } 0 13 {A21R:G -> A15R:A: outward } 0 14 {A20R:U -> A21R:G: adjacent_5p } 0 15 {A21R:G -> A20R:U: adjacent_3p } 0 16 {A21R:G -> A22R:G: adjacent_5p } 0 17 {A22R:G -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . . 9 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 12 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 B19R:A 0 1 B20R:C 0 2 B21R:C 0 3 A5R:G 0 4 A6R:A 0 5 A7R:G 0 6 A8R:U 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A7R:G -> A8R:U: adjacent_5p upward } 0 7 {A8R:U -> A7R:G: adjacent_3p downward } 0 8 {A7R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A8R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B19R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B19R:A -> B20R:C: adjacent_5p upward } 0 13 {B20R:C -> B19R:A: adjacent_3p downward } 0 14 {B20R:C -> B21R:C: adjacent_5p upward } 0 15 {B21R:C -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 B20R:C 0 1 B21R:C 0 2 B22R:U 0 3 A4R:A 0 4 A5R:G 0 5 A6R:A 0 6 A7R:G 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B22R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:A: adjacent_3p downward } 0 10 {A7R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B20R:C -> B21R:C: adjacent_5p upward } 0 13 {B21R:C -> B20R:C: adjacent_3p downward } 0 14 {B21R:C -> B22R:U: adjacent_5p upward } 0 15 {B22R:U -> B21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 9R:G 0 1 10R:G 0 2 11R:G 0 3 29R:C 0 4 30R:C 0 5 31R:C 0 6 32R:G 0 [Edges] 0 {9R:G -> 10R:G: adjacent_5p upward } 0 1 {10R:G -> 9R:G: adjacent_3p downward } 0 2 {9R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {31R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:G -> 32R:G: pairing antiparallel trans 34 Bs/Hh } 0 5 {32R:G -> 9R:G: pairing antiparallel trans 34 Hh/Bs } 0 6 {10R:G -> 11R:G: adjacent_5p upward } 0 7 {11R:G -> 10R:G: adjacent_3p downward } 0 8 {10R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {30R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {11R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {29R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {29R:C -> 30R:C: adjacent_5p } 0 13 {30R:C -> 29R:C: adjacent_3p } 0 14 {30R:C -> 31R:C: adjacent_5p upward } 0 15 {31R:C -> 30R:C: adjacent_3p downward } 0 16 {31R:C -> 32R:G: adjacent_5p } 0 17 {32R:G -> 31R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . 8 . . 2 . 7 . 10 . . . 3 . . 11 . 12 . . 4 . 9 . 13 . 14 . 5 3 . . . 15 . 16 6 5 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A12R:G 0 4 A13R:G 0 5 A14R:C 0 6 A15R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A15R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:G: adjacent_3p } 0 6 {A3R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A12R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {A12R:G -> A4R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {A12R:G -> A13R:G: adjacent_5p upward } 0 11 {A13R:G -> A12R:G: adjacent_3p downward } 0 12 {A13R:G -> A14R:C: adjacent_5p upward } 0 13 {A14R:C -> A13R:G: adjacent_3p downward } 0 14 {A14R:C -> A15R:U: adjacent_5p } 0 15 {A15R:U -> A14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:U 0 2 A8R:G 0 3 B24R:C 0 4 B25R:C 0 5 B26R:A 0 6 B27R:G 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:C: adjacent_3p } 0 2 {A6R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:U: adjacent_3p } 0 6 {A8R:G -> B24R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B24R:C -> A8R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {B24R:C -> B25R:C: adjacent_5p upward } 0 9 {B25R:C -> B24R:C: adjacent_3p downward } 0 10 {B25R:C -> B26R:A: adjacent_5p upward } 0 11 {B26R:A -> B25R:C: adjacent_3p downward } 0 12 {B26R:A -> B27R:G: adjacent_5p upward } 0 13 {B27R:G -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . [GraphModel] [Vertices] 0 B22R:U 0 1 B23R:C 0 2 B24R:C 0 3 A8R:G 0 4 A9R:G 0 5 A10R:G 0 6 A11R:A 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B24R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B24R:C -> A8R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A10R:G -> A11R:A: adjacent_5p upward } 0 7 {A11R:A -> A10R:G: adjacent_3p downward } 0 8 {A11R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B22R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B22R:U -> B23R:C: adjacent_5p } 0 11 {B23R:C -> B22R:U: adjacent_3p } 0 12 {B23R:C -> B24R:C: adjacent_5p upward } 0 13 {B24R:C -> B23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 10 . . . . 9 1 11 . 12 . . . . 2 . 13 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 B28R:C 0 1 B29R:G 0 2 B30R:G 0 3 A11R:A 0 4 A12R:G 0 5 A13R:U 0 6 A14R:G 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:A: adjacent_3p } 0 2 {A11R:A -> B30R:G: pairing parallel cis one_hbond 66 Wh/Wh } 0 3 {B30R:G -> A11R:A: pairing parallel cis one_hbond 66 Wh/Wh } 0 4 {A12R:G -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:G: adjacent_3p downward } 0 6 {A13R:U -> A14R:G: adjacent_5p upward } 0 7 {A14R:G -> A13R:U: adjacent_3p downward } 0 8 {A13R:U -> B29R:G: pairing antiparallel trans one_hbond Bh/Ww } 0 9 {B29R:G -> A13R:U: pairing antiparallel trans one_hbond Ww/Bh } 0 10 {A14R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B28R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B28R:C -> B29R:G: adjacent_5p upward } 0 13 {B29R:G -> B28R:C: adjacent_3p downward } 0 14 {B29R:G -> B30R:G: adjacent_5p } 0 15 {B30R:G -> B29R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:A 0 2 A23R:C 0 3 A9R:A 0 4 A10R:U 0 5 A11R:G 0 6 A12R:C 0 [Edges] 0 {A9R:A -> A10R:U: adjacent_5p } 0 1 {A10R:U -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A11R:G: outward } 0 3 {A11R:G -> A9R:A: outward } 0 4 {A9R:A -> A23R:C: pairing parallel trans XXVI Ww/Ww } 0 5 {A23R:C -> A9R:A: pairing parallel trans XXVI Ww/Ww } 0 6 {A10R:U -> A11R:G: adjacent_5p } 0 7 {A11R:G -> A10R:U: adjacent_3p } 0 8 {A11R:G -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A22R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {A22R:A -> A11R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A12R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:G -> A22R:A: adjacent_5p upward } 0 15 {A22R:A -> A21R:G: adjacent_3p downward } 0 16 {A22R:A -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A23R:C 0 1 A24R:G 0 2 A25R:A 0 3 A6R:U 0 4 A7R:C 0 5 A8R:A 0 6 A9R:A 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:A -> A9R:A: adjacent_5p inward } 0 9 {A9R:A -> A8R:A: adjacent_3p inward } 0 10 {A9R:A -> A23R:C: pairing parallel trans XXVI Ww/Ww } 0 11 {A23R:C -> A9R:A: pairing parallel trans XXVI Ww/Ww } 0 12 {A23R:C -> A24R:G: adjacent_5p } 0 13 {A24R:G -> A23R:C: adjacent_3p } 0 14 {A24R:G -> A25R:A: adjacent_5p upward } 0 15 {A25R:A -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:G 0 2 A18R:G 0 3 A22R:A 0 4 A23R:A 0 5 A24R:C 0 6 A25R:A 0 [Edges] 0 {A16R:C -> A17R:G: adjacent_5p } 0 1 {A17R:G -> A16R:C: adjacent_3p } 0 2 {A16R:C -> A25R:A: pairing antiparallel cis one_hbond 78 Bs/Wh } 0 3 {A25R:A -> A16R:C: pairing antiparallel cis one_hbond 78 Wh/Bs } 0 4 {A17R:G -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:G: adjacent_3p downward } 0 6 {A18R:G -> A22R:A: pairing parallel trans one_hbond Ss/Bs } 0 7 {A22R:A -> A18R:G: pairing parallel trans one_hbond Bs/Ss } 0 8 {A22R:A -> A23R:A: adjacent_5p } 0 9 {A23R:A -> A22R:A: adjacent_3p } 0 10 {A23R:A -> A24R:C: adjacent_5p } 0 11 {A24R:C -> A23R:A: adjacent_3p } 0 12 {A24R:C -> A25R:A: adjacent_5p } 0 13 {A25R:A -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 R13R:C 0 1 R14R:C 0 2 R15R:C 0 3 R5R:G 0 4 R6R:C 0 5 R7R:G 0 6 R8R:G 0 [Edges] 0 {R5R:G -> R6R:C: adjacent_5p } 0 1 {R6R:C -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:C -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:C: adjacent_3p } 0 8 {R7R:G -> R8R:G: adjacent_5p upward } 0 9 {R8R:G -> R7R:G: adjacent_3p downward } 0 10 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R7R:G -> R15R:C: outward } 0 13 {R15R:C -> R7R:G: outward } 0 14 {R8R:G -> R13R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R13R:C -> R8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R13R:C -> R14R:C: adjacent_5p } 0 17 {R14R:C -> R13R:C: adjacent_3p } 0 18 {R14R:C -> R15R:C: adjacent_5p } 0 19 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 . . 11 . 2 . 19 . 5 . 13 . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 12 3 7 . 8 6 14 . . . . 9 . [GraphModel] [Vertices] 0 S13R:C 0 1 S14R:C 0 2 S15R:C 0 3 S5R:G 0 4 S6R:C 0 5 S7R:G 0 6 S8R:G 0 [Edges] 0 {S5R:G -> S6R:C: adjacent_5p } 0 1 {S6R:C -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:C -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:C: adjacent_3p } 0 8 {S7R:G -> S8R:G: adjacent_5p upward } 0 9 {S8R:G -> S7R:G: adjacent_3p downward } 0 10 {S7R:G -> S14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {S14R:C -> S7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {S8R:G -> S13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {S13R:C -> S8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {S13R:C -> S14R:C: adjacent_5p upward } 0 15 {S14R:C -> S13R:C: adjacent_3p downward } 0 16 {S14R:C -> S15R:C: adjacent_5p } 0 17 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B20R:C 0 1 B21R:G 0 2 B22R:G 0 3 B46R:C 0 4 B47R:C 0 5 B48R:C 0 6 B49R:G 0 [Edges] 0 {B20R:C -> B21R:G: adjacent_5p upward } 0 1 {B21R:G -> B20R:C: adjacent_3p downward } 0 2 {B20R:C -> B49R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B49R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B21R:G -> B22R:G: adjacent_5p upward } 0 5 {B22R:G -> B21R:G: adjacent_3p downward } 0 6 {B21R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B48R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B21R:G -> B49R:G: outward } 0 9 {B49R:G -> B21R:G: outward } 0 10 {B22R:G -> B46R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 11 {B46R:C -> B22R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 12 {B46R:C -> B47R:C: adjacent_5p } 0 13 {B47R:C -> B46R:C: adjacent_3p } 0 14 {B47R:C -> B48R:C: adjacent_5p } 0 15 {B48R:C -> B47R:C: adjacent_3p } 0 16 {B48R:C -> B49R:G: adjacent_5p } 0 17 {B49R:G -> B48R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 B21R:G 0 1 B22R:G 0 2 B23R:U 0 3 B45R:A 0 4 B46R:C 0 5 B47R:C 0 6 B48R:C 0 [Edges] 0 {B21R:G -> B22R:G: adjacent_5p upward } 0 1 {B22R:G -> B21R:G: adjacent_3p downward } 0 2 {B21R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B22R:G -> B23R:U: adjacent_5p upward } 0 5 {B23R:U -> B22R:G: adjacent_3p downward } 0 6 {B22R:G -> B46R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 7 {B46R:C -> B22R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 8 {B23R:U -> B45R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B45R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B45R:A -> B46R:C: adjacent_5p upward } 0 11 {B46R:C -> B45R:A: adjacent_3p downward } 0 12 {B46R:C -> B47R:C: adjacent_5p } 0 13 {B47R:C -> B46R:C: adjacent_3p } 0 14 {B47R:C -> B48R:C: adjacent_5p } 0 15 {B48R:C -> B47R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 B38R:C 0 1 B39R:U 0 2 B40R:G 0 3 B28R:G 0 4 B29R:A 0 5 B30R:G 0 6 B31R:G 0 [Edges] 0 {B28R:G -> B29R:A: adjacent_5p } 0 1 {B29R:A -> B28R:G: adjacent_3p } 0 2 {B28R:G -> B40R:G: pairing antiparallel cis one_hbond 115 Ww/Wh } 0 3 {B40R:G -> B28R:G: pairing antiparallel cis one_hbond 115 Wh/Ww } 0 4 {B29R:A -> B30R:G: adjacent_5p } 0 5 {B30R:G -> B29R:A: adjacent_3p } 0 6 {B30R:G -> B31R:G: adjacent_5p upward } 0 7 {B31R:G -> B30R:G: adjacent_3p downward } 0 8 {B30R:G -> B39R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B39R:U -> B30R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {B30R:G -> B40R:G: outward } 0 11 {B40R:G -> B30R:G: outward } 0 12 {B31R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B38R:C -> B31R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B38R:C -> B39R:U: adjacent_5p upward } 0 15 {B39R:U -> B38R:C: adjacent_3p downward } 0 16 {B39R:U -> B40R:G: adjacent_5p } 0 17 {B40R:G -> B39R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 B39R:U 0 1 B40R:G 0 2 B41R:G 0 3 B27R:A 0 4 B28R:G 0 5 B29R:A 0 6 B30R:G 0 [Edges] 0 {B27R:A -> B28R:G: adjacent_5p } 0 1 {B28R:G -> B27R:A: adjacent_3p } 0 2 {B27R:A -> B41R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 3 {B41R:G -> B27R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 4 {B28R:G -> B29R:A: adjacent_5p } 0 5 {B29R:A -> B28R:G: adjacent_3p } 0 6 {B28R:G -> B40R:G: pairing antiparallel cis one_hbond 115 Ww/Wh } 0 7 {B40R:G -> B28R:G: pairing antiparallel cis one_hbond 115 Wh/Ww } 0 8 {B29R:A -> B30R:G: adjacent_5p } 0 9 {B30R:G -> B29R:A: adjacent_3p } 0 10 {B30R:G -> B39R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B39R:U -> B30R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B30R:G -> B40R:G: outward } 0 13 {B40R:G -> B30R:G: outward } 0 14 {B39R:U -> B40R:G: adjacent_5p } 0 15 {B40R:G -> B39R:U: adjacent_3p } 0 16 {B40R:G -> B41R:G: adjacent_5p upward } 0 17 {B41R:G -> B40R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . [GraphModel] [Vertices] 0 B50R:U 0 1 B51R:G 0 2 B52R:A 0 3 B16R:U 0 4 B17R:A 0 5 B18R:G 0 6 B19R:A 0 [Edges] 0 {B16R:U -> B17R:A: adjacent_5p } 0 1 {B17R:A -> B16R:U: adjacent_3p } 0 2 {B16R:U -> B51R:G: inward } 0 3 {B51R:G -> B16R:U: inward } 0 4 {B16R:U -> B52R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {B52R:A -> B16R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {B17R:A -> B18R:G: adjacent_5p } 0 7 {B18R:G -> B17R:A: adjacent_3p } 0 8 {B18R:G -> B19R:A: adjacent_5p upward } 0 9 {B19R:A -> B18R:G: adjacent_3p downward } 0 10 {B18R:G -> B52R:A: outward } 0 11 {B52R:A -> B18R:G: outward } 0 12 {B19R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B50R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B50R:U -> B51R:G: adjacent_5p upward } 0 15 {B51R:G -> B50R:U: adjacent_3p downward } 0 16 {B51R:G -> B52R:A: adjacent_5p } 0 17 {B52R:A -> B51R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 3 . . . 2 . 17 . 5 . 11 . 3 . 2 4 . 0 . . 4 . . . 1 . 6 . 5 . . 10 . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:C 0 2 A16R:U 0 3 A55R:A 0 4 A56R:U 0 5 A57R:G 0 6 A58R:C 0 [Edges] 0 {A14R:G -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> A58R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A58R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:C -> A16R:U: adjacent_5p } 0 5 {A16R:U -> A15R:C: adjacent_3p } 0 6 {A15R:C -> A57R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A57R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:U -> A55R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {A55R:A -> A16R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {A55R:A -> A56R:U: adjacent_5p } 0 11 {A56R:U -> A55R:A: adjacent_3p } 0 12 {A55R:A -> A57R:G: upward } 0 13 {A57R:G -> A55R:A: downward } 0 14 {A56R:U -> A57R:G: adjacent_5p } 0 15 {A57R:G -> A56R:U: adjacent_3p } 0 16 {A57R:G -> A58R:C: adjacent_5p upward } 0 17 {A58R:C -> A57R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C3R:A 0 1 C4R:U 0 2 C5R:U 0 3 C24R:A 0 4 C25R:A 0 5 C26R:A 0 6 C27R:A 0 [Edges] 0 {C3R:A -> C4R:U: adjacent_5p upward } 0 1 {C4R:U -> C3R:A: adjacent_3p downward } 0 2 {C3R:A -> C27R:A: pairing antiparallel trans 41 Ss/Hh } 0 3 {C27R:A -> C3R:A: pairing antiparallel trans 41 Hh/Ss } 0 4 {C4R:U -> C5R:U: adjacent_5p upward } 0 5 {C5R:U -> C4R:U: adjacent_3p downward } 0 6 {C4R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C25R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C24R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C24R:A -> C25R:A: adjacent_5p upward } 0 11 {C25R:A -> C24R:A: adjacent_3p downward } 0 12 {C25R:A -> C26R:A: adjacent_5p } 0 13 {C26R:A -> C25R:A: adjacent_3p } 0 14 {C26R:A -> C27R:A: adjacent_5p } 0 15 {C27R:A -> C26R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:C 0 3 A12R:G 0 4 A13R:U 0 5 A14R:C 0 6 A15R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A12R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 9 {A12R:G -> A8R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 10 {A12R:G -> A13R:U: adjacent_5p } 0 11 {A13R:U -> A12R:G: adjacent_3p } 0 12 {A12R:G -> A14R:C: upward } 0 13 {A14R:C -> A12R:G: downward } 0 14 {A13R:U -> A14R:C: adjacent_5p } 0 15 {A14R:C -> A13R:U: adjacent_3p } 0 16 {A14R:C -> A15R:C: adjacent_5p } 0 17 {A15R:C -> A14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A25R:A 0 1 A26R:C 0 2 A27R:G 0 3 A11R:C 0 4 A12R:G 0 5 A13R:U 0 6 A14R:C 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:U: adjacent_5p } 0 5 {A13R:U -> A12R:G: adjacent_3p } 0 6 {A12R:G -> A14R:C: upward } 0 7 {A14R:C -> A12R:G: downward } 0 8 {A12R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A26R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A12R:G -> A27R:G: outward } 0 11 {A27R:G -> A12R:G: outward } 0 12 {A13R:U -> A14R:C: adjacent_5p } 0 13 {A14R:C -> A13R:U: adjacent_3p } 0 14 {A14R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 15 {A25R:A -> A14R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 16 {A25R:A -> A26R:C: adjacent_5p upward } 0 17 {A26R:C -> A25R:A: adjacent_3p downward } 0 18 {A26R:C -> A27R:G: adjacent_5p upward } 0 19 {A27R:G -> A26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 . 9 . . 2 . 19 . 3 11 . . 3 . . 2 . 0 . . 4 . 8 10 1 . 4 6 5 . . . . 5 . 12 6 14 . . . 7 13 . MOLECULE: [GraphModel] [Vertices] 0 A133R:A 0 1 A134R:G 0 2 A135R:U 0 3 A187R:A 0 4 A188R:G 0 5 A189R:C 0 6 A190R:U 0 [Edges] 0 {A133R:A -> A134R:G: adjacent_5p upward } 0 1 {A134R:G -> A133R:A: adjacent_3p downward } 0 2 {A133R:A -> A190R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A190R:U -> A133R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A134R:G -> A135R:U: adjacent_5p upward } 0 5 {A135R:U -> A134R:G: adjacent_3p downward } 0 6 {A134R:G -> A189R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A189R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A135R:U -> A187R:A: pairing parallel cis XXIII Ww/Hh } 0 9 {A187R:A -> A135R:U: pairing parallel cis XXIII Hh/Ww } 0 10 {A187R:A -> A188R:G: adjacent_5p } 0 11 {A188R:G -> A187R:A: adjacent_3p } 0 12 {A187R:A -> A189R:C: outward } 0 13 {A189R:C -> A187R:A: outward } 0 14 {A188R:G -> A189R:C: adjacent_5p } 0 15 {A189R:C -> A188R:G: adjacent_3p } 0 16 {A189R:C -> A190R:U: adjacent_5p upward } 0 17 {A190R:U -> A189R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A191R:G 0 1 A192R:A 0 2 A193R:C 0 3 A129R:G 0 4 A130R:U 0 5 A131R:U 0 6 A132R:C 0 [Edges] 0 {A129R:G -> A130R:U: adjacent_5p } 0 1 {A130R:U -> A129R:G: adjacent_3p } 0 2 {A129R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A193R:C -> A129R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A130R:U -> A131R:U: adjacent_5p } 0 5 {A131R:U -> A130R:U: adjacent_3p } 0 6 {A131R:U -> A132R:C: adjacent_5p } 0 7 {A132R:C -> A131R:U: adjacent_3p } 0 8 {A131R:U -> A192R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A192R:A -> A131R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A132R:C -> A191R:G: pairing antiparallel cis Ww/Ww } 0 11 {A191R:G -> A132R:C: pairing antiparallel cis Ww/Ww } 0 12 {A191R:G -> A192R:A: adjacent_5p upward } 0 13 {A192R:A -> A191R:G: adjacent_3p downward } 0 14 {A192R:A -> A193R:C: adjacent_5p upward } 0 15 {A193R:C -> A192R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A192R:A 0 1 A193R:C 0 2 A194R:G 0 3 A128R:C 0 4 A129R:G 0 5 A130R:U 0 6 A131R:U 0 [Edges] 0 {A128R:C -> A129R:G: adjacent_5p upward } 0 1 {A129R:G -> A128R:C: adjacent_3p downward } 0 2 {A128R:C -> A194R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A194R:G -> A128R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A129R:G -> A130R:U: adjacent_5p } 0 5 {A130R:U -> A129R:G: adjacent_3p } 0 6 {A129R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A193R:C -> A129R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A129R:G -> A194R:G: outward } 0 9 {A194R:G -> A129R:G: outward } 0 10 {A130R:U -> A131R:U: adjacent_5p } 0 11 {A131R:U -> A130R:U: adjacent_3p } 0 12 {A131R:U -> A192R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A192R:A -> A131R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A192R:A -> A193R:C: adjacent_5p upward } 0 15 {A193R:C -> A192R:A: adjacent_3p downward } 0 16 {A193R:C -> A194R:G: adjacent_5p upward } 0 17 {A194R:G -> A193R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 . . 2 . 17 . 3 9 . . 3 . . 2 . 0 . . 4 . 6 8 1 . 4 . 5 . . . . 5 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 A204R:C 0 1 A205R:U 0 2 A206R:A 0 3 A114R:A 0 4 A115R:A 0 5 A116R:G 0 6 A117R:G 0 [Edges] 0 {A114R:A -> A115R:A: adjacent_5p upward } 0 1 {A115R:A -> A114R:A: adjacent_3p downward } 0 2 {A114R:A -> A206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 3 {A206R:A -> A114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 4 {A115R:A -> A116R:G: adjacent_5p upward } 0 5 {A116R:G -> A115R:A: adjacent_3p downward } 0 6 {A116R:G -> A117R:G: adjacent_5p upward } 0 7 {A117R:G -> A116R:G: adjacent_3p downward } 0 8 {A116R:G -> A205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A205R:U -> A116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A117R:G -> A204R:C: pairing antiparallel cis Ww/Ww } 0 11 {A204R:C -> A117R:G: pairing antiparallel cis Ww/Ww } 0 12 {A204R:C -> A205R:U: adjacent_5p upward } 0 13 {A205R:U -> A204R:C: adjacent_3p downward } 0 14 {A205R:U -> A206R:A: adjacent_5p upward } 0 15 {A206R:A -> A205R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A205R:U 0 1 A206R:A 0 2 A207R:A 0 3 A113R:A 0 4 A114R:A 0 5 A115R:A 0 6 A116R:G 0 [Edges] 0 {A113R:A -> A114R:A: adjacent_5p } 0 1 {A114R:A -> A113R:A: adjacent_3p } 0 2 {A113R:A -> A206R:A: inward } 0 3 {A206R:A -> A113R:A: inward } 0 4 {A113R:A -> A207R:A: pairing antiparallel trans 41 Ss/Hh } 0 5 {A207R:A -> A113R:A: pairing antiparallel trans 41 Hh/Ss } 0 6 {A114R:A -> A115R:A: adjacent_5p upward } 0 7 {A115R:A -> A114R:A: adjacent_3p downward } 0 8 {A114R:A -> A206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 9 {A206R:A -> A114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 10 {A114R:A -> A207R:A: outward } 0 11 {A207R:A -> A114R:A: outward } 0 12 {A115R:A -> A116R:G: adjacent_5p upward } 0 13 {A116R:G -> A115R:A: adjacent_3p downward } 0 14 {A116R:G -> A205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A205R:U -> A116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A205R:U -> A206R:A: adjacent_5p upward } 0 17 {A206R:A -> A205R:U: adjacent_3p downward } 0 18 {A206R:A -> A207R:A: adjacent_5p } 0 19 {A207R:A -> A206R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 3 9 . . 2 . 19 . 5 11 . . 3 . 2 4 . 0 . . 4 . 8 10 1 . 6 . 5 . . . . 7 . 12 6 14 . . . . 13 . [GraphModel] [Vertices] 0 A222R:C 0 1 A223R:C 0 2 A224R:U 0 3 A248R:A 0 4 A249R:U 0 5 A250R:G 0 6 A251R:G 0 [Edges] 0 {A222R:C -> A223R:C: adjacent_5p upward } 0 1 {A223R:C -> A222R:C: adjacent_3p downward } 0 2 {A222R:C -> A251R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A251R:G -> A222R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A223R:C -> A224R:U: adjacent_5p upward } 0 5 {A224R:U -> A223R:C: adjacent_3p downward } 0 6 {A223R:C -> A250R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A250R:G -> A223R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A224R:U -> A248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {A248R:A -> A224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {A248R:A -> A249R:U: adjacent_5p } 0 11 {A249R:U -> A248R:A: adjacent_3p } 0 12 {A248R:A -> A250R:G: upward } 0 13 {A250R:G -> A248R:A: downward } 0 14 {A249R:U -> A250R:G: adjacent_5p } 0 15 {A250R:G -> A249R:U: adjacent_3p } 0 16 {A250R:G -> A251R:G: adjacent_5p upward } 0 17 {A251R:G -> A250R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A226R:A 0 1 A227R:G 0 2 A228R:U 0 3 A246R:A 0 4 A247R:U 0 5 A248R:A 0 6 A249R:U 0 [Edges] 0 {A226R:A -> A227R:G: adjacent_5p upward } 0 1 {A227R:G -> A226R:A: adjacent_3p downward } 0 2 {A226R:A -> A249R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A249R:U -> A226R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A227R:G -> A228R:U: adjacent_5p upward } 0 5 {A228R:U -> A227R:G: adjacent_3p downward } 0 6 {A227R:G -> A247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A247R:U -> A227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A228R:U -> A246R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A246R:A -> A228R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A246R:A -> A247R:U: adjacent_5p upward } 0 11 {A247R:U -> A246R:A: adjacent_3p downward } 0 12 {A247R:U -> A248R:A: adjacent_5p } 0 13 {A248R:A -> A247R:U: adjacent_3p } 0 14 {A248R:A -> A249R:U: adjacent_5p } 0 15 {A249R:U -> A248R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 B133R:A 0 1 B134R:G 0 2 B135R:U 0 3 B187R:A 0 4 B188R:G 0 5 B189R:C 0 6 B190R:U 0 [Edges] 0 {B133R:A -> B134R:G: adjacent_5p upward } 0 1 {B134R:G -> B133R:A: adjacent_3p downward } 0 2 {B133R:A -> B190R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B190R:U -> B133R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B134R:G -> B135R:U: adjacent_5p upward } 0 5 {B135R:U -> B134R:G: adjacent_3p downward } 0 6 {B134R:G -> B189R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B189R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B135R:U -> B187R:A: pairing parallel cis XXIII Ww/Hh } 0 9 {B187R:A -> B135R:U: pairing parallel cis XXIII Hh/Ww } 0 10 {B187R:A -> B188R:G: adjacent_5p } 0 11 {B188R:G -> B187R:A: adjacent_3p } 0 12 {B187R:A -> B189R:C: outward } 0 13 {B189R:C -> B187R:A: outward } 0 14 {B188R:G -> B189R:C: adjacent_5p } 0 15 {B189R:C -> B188R:G: adjacent_3p } 0 16 {B189R:C -> B190R:U: adjacent_5p upward } 0 17 {B190R:U -> B189R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 B191R:G 0 1 B192R:A 0 2 B193R:C 0 3 B129R:G 0 4 B130R:U 0 5 B131R:U 0 6 B132R:C 0 [Edges] 0 {B129R:G -> B130R:U: adjacent_5p } 0 1 {B130R:U -> B129R:G: adjacent_3p } 0 2 {B129R:G -> B193R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B193R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B130R:U -> B131R:U: adjacent_5p } 0 5 {B131R:U -> B130R:U: adjacent_3p } 0 6 {B131R:U -> B132R:C: adjacent_5p } 0 7 {B132R:C -> B131R:U: adjacent_3p } 0 8 {B131R:U -> B192R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B192R:A -> B131R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B132R:C -> B191R:G: pairing antiparallel cis Ww/Ww } 0 11 {B191R:G -> B132R:C: pairing antiparallel cis Ww/Ww } 0 12 {B191R:G -> B192R:A: adjacent_5p upward } 0 13 {B192R:A -> B191R:G: adjacent_3p downward } 0 14 {B192R:A -> B193R:C: adjacent_5p upward } 0 15 {B193R:C -> B192R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 B192R:A 0 1 B193R:C 0 2 B194R:G 0 3 B128R:C 0 4 B129R:G 0 5 B130R:U 0 6 B131R:U 0 [Edges] 0 {B128R:C -> B129R:G: adjacent_5p upward } 0 1 {B129R:G -> B128R:C: adjacent_3p downward } 0 2 {B128R:C -> B194R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B194R:G -> B128R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B129R:G -> B130R:U: adjacent_5p } 0 5 {B130R:U -> B129R:G: adjacent_3p } 0 6 {B129R:G -> B193R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B193R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B129R:G -> B194R:G: outward } 0 9 {B194R:G -> B129R:G: outward } 0 10 {B130R:U -> B131R:U: adjacent_5p } 0 11 {B131R:U -> B130R:U: adjacent_3p } 0 12 {B131R:U -> B192R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B192R:A -> B131R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B192R:A -> B193R:C: adjacent_5p upward } 0 15 {B193R:C -> B192R:A: adjacent_3p downward } 0 16 {B193R:C -> B194R:G: adjacent_5p upward } 0 17 {B194R:G -> B193R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 . . 2 . 17 . 3 9 . . 3 . . 2 . 0 . . 4 . 6 8 1 . 4 . 5 . . . . 5 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 B204R:C 0 1 B205R:U 0 2 B206R:A 0 3 B114R:A 0 4 B115R:A 0 5 B116R:G 0 6 B117R:G 0 [Edges] 0 {B114R:A -> B115R:A: adjacent_5p upward } 0 1 {B115R:A -> B114R:A: adjacent_3p downward } 0 2 {B114R:A -> B206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 3 {B206R:A -> B114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 4 {B115R:A -> B116R:G: adjacent_5p upward } 0 5 {B116R:G -> B115R:A: adjacent_3p downward } 0 6 {B116R:G -> B117R:G: adjacent_5p upward } 0 7 {B117R:G -> B116R:G: adjacent_3p downward } 0 8 {B116R:G -> B205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B205R:U -> B116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {B117R:G -> B204R:C: pairing antiparallel cis Ww/Ww } 0 11 {B204R:C -> B117R:G: pairing antiparallel cis Ww/Ww } 0 12 {B204R:C -> B205R:U: adjacent_5p upward } 0 13 {B205R:U -> B204R:C: adjacent_3p downward } 0 14 {B205R:U -> B206R:A: adjacent_5p upward } 0 15 {B206R:A -> B205R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 B205R:U 0 1 B206R:A 0 2 B207R:A 0 3 B113R:A 0 4 B114R:A 0 5 B115R:A 0 6 B116R:G 0 [Edges] 0 {B113R:A -> B114R:A: adjacent_5p } 0 1 {B114R:A -> B113R:A: adjacent_3p } 0 2 {B113R:A -> B206R:A: inward } 0 3 {B206R:A -> B113R:A: inward } 0 4 {B113R:A -> B207R:A: pairing antiparallel trans 41 Ss/Hh } 0 5 {B207R:A -> B113R:A: pairing antiparallel trans 41 Hh/Ss } 0 6 {B114R:A -> B115R:A: adjacent_5p upward } 0 7 {B115R:A -> B114R:A: adjacent_3p downward } 0 8 {B114R:A -> B206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 9 {B206R:A -> B114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 10 {B114R:A -> B207R:A: outward } 0 11 {B207R:A -> B114R:A: outward } 0 12 {B115R:A -> B116R:G: adjacent_5p upward } 0 13 {B116R:G -> B115R:A: adjacent_3p downward } 0 14 {B116R:G -> B205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B205R:U -> B116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B205R:U -> B206R:A: adjacent_5p upward } 0 17 {B206R:A -> B205R:U: adjacent_3p downward } 0 18 {B206R:A -> B207R:A: adjacent_5p } 0 19 {B207R:A -> B206R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 3 9 . . 2 . 19 . 5 11 . . 3 . 2 4 . 0 . . 4 . 8 10 1 . 6 . 5 . . . . 7 . 12 6 14 . . . . 13 . [GraphModel] [Vertices] 0 B222R:C 0 1 B223R:C 0 2 B224R:U 0 3 B248R:A 0 4 B249R:U 0 5 B250R:G 0 6 B251R:G 0 [Edges] 0 {B222R:C -> B223R:C: adjacent_5p upward } 0 1 {B223R:C -> B222R:C: adjacent_3p downward } 0 2 {B222R:C -> B251R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B251R:G -> B222R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B223R:C -> B224R:U: adjacent_5p upward } 0 5 {B224R:U -> B223R:C: adjacent_3p downward } 0 6 {B223R:C -> B250R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B250R:G -> B223R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B224R:U -> B248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {B248R:A -> B224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {B248R:A -> B249R:U: adjacent_5p } 0 11 {B249R:U -> B248R:A: adjacent_3p } 0 12 {B248R:A -> B250R:G: upward } 0 13 {B250R:G -> B248R:A: downward } 0 14 {B249R:U -> B250R:G: adjacent_5p } 0 15 {B250R:G -> B249R:U: adjacent_3p } 0 16 {B250R:G -> B251R:G: adjacent_5p upward } 0 17 {B251R:G -> B250R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 B226R:A 0 1 B227R:G 0 2 B228R:U 0 3 B246R:A 0 4 B247R:U 0 5 B248R:A 0 6 B249R:U 0 [Edges] 0 {B226R:A -> B227R:G: adjacent_5p upward } 0 1 {B227R:G -> B226R:A: adjacent_3p downward } 0 2 {B226R:A -> B249R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B249R:U -> B226R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B227R:G -> B228R:U: adjacent_5p upward } 0 5 {B228R:U -> B227R:G: adjacent_3p downward } 0 6 {B227R:G -> B247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B247R:U -> B227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B228R:U -> B246R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B246R:A -> B228R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B246R:A -> B247R:U: adjacent_5p upward } 0 11 {B247R:U -> B246R:A: adjacent_3p downward } 0 12 {B247R:U -> B248R:A: adjacent_5p } 0 13 {B248R:A -> B247R:U: adjacent_3p } 0 14 {B248R:A -> B249R:U: adjacent_5p } 0 15 {B249R:U -> B248R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 B118R:A 0 1 B119R:A 0 2 B120R:G 0 3 B230R:C 0 4 B231R:A 0 5 B232R:G 0 6 B233R:U 0 [Edges] 0 {B118R:A -> B119R:A: adjacent_5p upward } 0 1 {B119R:A -> B118R:A: adjacent_3p downward } 0 2 {B118R:A -> B233R:U: pairing antiparallel cis one_hbond 48 Wh/Hw } 0 3 {B233R:U -> B118R:A: pairing antiparallel cis one_hbond 48 Hw/Wh } 0 4 {B119R:A -> B120R:G: adjacent_5p upward } 0 5 {B120R:G -> B119R:A: adjacent_3p downward } 0 6 {B120R:G -> B230R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B230R:C -> B120R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B120R:G -> B231R:A: outward } 0 9 {B231R:A -> B120R:G: outward } 0 10 {B230R:C -> B231R:A: adjacent_5p upward } 0 11 {B231R:A -> B230R:C: adjacent_3p downward } 0 12 {B231R:A -> B232R:G: adjacent_5p upward } 0 13 {B232R:G -> B231R:A: adjacent_3p downward } 0 14 {B232R:G -> B233R:U: adjacent_5p } 0 15 {B233R:U -> B232R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 8 . . 3 . . 7 . 10 . . 4 . . 9 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:U 0 3 B5R:A 0 4 B6R:A 0 5 B7R:C 0 6 B8R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B8R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B7R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B8R:A: outward } 0 9 {B8R:A -> A4R:G: outward } 0 10 {A5R:U -> B5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B5R:A -> A5R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A5R:U -> B6R:A: pairing antiparallel cis Ws/Ww } 0 13 {B6R:A -> A5R:U: pairing antiparallel cis Ww/Ws } 0 14 {B5R:A -> B6R:A: adjacent_5p upward } 0 15 {B6R:A -> B5R:A: adjacent_3p downward } 0 16 {B6R:A -> B7R:C: adjacent_5p upward } 0 17 {B7R:C -> B6R:A: adjacent_3p downward } 0 18 {B7R:C -> B8R:A: adjacent_5p upward } 0 19 {B8R:A -> B7R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 12 . . 3 . . 11 . 14 . . 4 . . 13 15 . 16 . 5 . 7 . . 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:A 0 3 B4R:U 0 4 B5R:A 0 5 B6R:A 0 6 B7R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B5R:A -> A5R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A5R:U -> B6R:A: pairing antiparallel cis Ws/Ww } 0 9 {B6R:A -> A5R:U: pairing antiparallel cis Ww/Ws } 0 10 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> B5R:A: outward } 0 13 {B5R:A -> A6R:A: outward } 0 14 {B4R:U -> B5R:A: adjacent_5p } 0 15 {B5R:A -> B4R:U: adjacent_3p } 0 16 {B5R:A -> B6R:A: adjacent_5p upward } 0 17 {B6R:A -> B5R:A: adjacent_3p downward } 0 18 {B6R:A -> B7R:C: adjacent_5p upward } 0 19 {B7R:C -> B6R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 12 . . 3 . . 11 . 14 . . 4 . 7 13 15 . 16 . 5 . 9 . . 17 . 18 6 3 . . . . 19 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 A7R:G 0 3 B3R:C 0 4 B4R:U 0 5 B5R:A 0 6 B6R:A 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B5R:A -> A5R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A5R:U -> B6R:A: pairing antiparallel cis Ws/Ww } 0 5 {B6R:A -> A5R:U: pairing antiparallel cis Ww/Ws } 0 6 {A6R:A -> A7R:G: adjacent_5p upward } 0 7 {A7R:G -> A6R:A: adjacent_3p downward } 0 8 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A6R:A -> B5R:A: outward } 0 11 {B5R:A -> A6R:A: outward } 0 12 {A7R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B3R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B3R:C -> B4R:U: adjacent_5p upward } 0 15 {B4R:U -> B3R:C: adjacent_3p downward } 0 16 {B4R:U -> B5R:A: adjacent_5p } 0 17 {B5R:A -> B4R:U: adjacent_3p } 0 18 {B5R:A -> B6R:A: adjacent_5p upward } 0 19 {B6R:A -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . 8 10 . 2 . 7 . 12 . . . 3 . . 13 . 14 . . 4 . 9 . 15 . 16 . 5 3 11 . . 17 . 18 6 5 . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B20R:A 0 1 B21R:G 0 2 B22R:A 0 3 B60R:U 0 4 B61R:U 0 5 B62R:A 0 6 B63R:C 0 [Edges] 0 {B20R:A -> B21R:G: adjacent_5p upward } 0 1 {B21R:G -> B20R:A: adjacent_3p downward } 0 2 {B20R:A -> B63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 3 {B63R:C -> B20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 4 {B21R:G -> B22R:A: adjacent_5p } 0 5 {B22R:A -> B21R:G: adjacent_3p } 0 6 {B21R:G -> B60R:U: inward } 0 7 {B60R:U -> B21R:G: inward } 0 8 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {B22R:A -> B60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 11 {B60R:U -> B22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 12 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 13 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 14 {B22R:A -> B62R:A: outward } 0 15 {B62R:A -> B22R:A: outward } 0 16 {B60R:U -> B61R:U: adjacent_5p } 0 17 {B61R:U -> B60R:U: adjacent_3p } 0 18 {B61R:U -> B62R:A: adjacent_5p } 0 19 {B62R:A -> B61R:U: adjacent_3p } 0 20 {B62R:A -> B63R:C: adjacent_5p upward } 0 21 {B63R:C -> B62R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 6 . 8 . 2 . 5 . 10 12 14 . 3 . 7 11 . 16 . . 4 . . 13 17 . 18 . 5 . 9 15 . 19 . 20 6 3 . . . . 21 . [GraphModel] [Vertices] 0 B21R:G 0 1 B22R:A 0 2 B23R:A 0 3 B59R:A 0 4 B60R:U 0 5 B61R:U 0 6 B62R:A 0 [Edges] 0 {B21R:G -> B22R:A: adjacent_5p } 0 1 {B22R:A -> B21R:G: adjacent_3p } 0 2 {B21R:G -> B60R:U: inward } 0 3 {B60R:U -> B21R:G: inward } 0 4 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {B22R:A -> B23R:A: adjacent_5p upward } 0 7 {B23R:A -> B22R:A: adjacent_3p downward } 0 8 {B22R:A -> B60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 9 {B60R:U -> B22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 10 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 11 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 12 {B22R:A -> B62R:A: outward } 0 13 {B62R:A -> B22R:A: outward } 0 14 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 15 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 16 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 17 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 18 {B59R:A -> B60R:U: adjacent_5p upward } 0 19 {B60R:U -> B59R:A: adjacent_3p downward } 0 20 {B60R:U -> B61R:U: adjacent_5p } 0 21 {B61R:U -> B60R:U: adjacent_3p } 0 22 {B61R:U -> B62R:A: adjacent_5p } 0 23 {B62R:A -> B61R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . 8 10 12 2 . 7 . 14 . 16 . 3 . . 15 . 18 . . 4 3 9 . 19 . 20 . 5 . 11 17 . 21 . 22 6 5 13 . . . 23 . [GraphModel] [Vertices] 0 B22R:A 0 1 B23R:A 0 2 B24R:A 0 3 B57R:A 0 4 B58R:U 0 5 B59R:A 0 6 B60R:U 0 [Edges] 0 {B22R:A -> B23R:A: adjacent_5p upward } 0 1 {B23R:A -> B22R:A: adjacent_3p downward } 0 2 {B22R:A -> B60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {B60R:U -> B22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {B23R:A -> B24R:A: adjacent_5p upward } 0 5 {B24R:A -> B23R:A: adjacent_3p downward } 0 6 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 7 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 8 {B24R:A -> B57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 9 {B57R:A -> B24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 10 {B57R:A -> B58R:U: adjacent_5p } 0 11 {B58R:U -> B57R:A: adjacent_3p } 0 12 {B57R:A -> B59R:A: upward } 0 13 {B59R:A -> B57R:A: downward } 0 14 {B58R:U -> B59R:A: adjacent_5p } 0 15 {B59R:A -> B58R:U: adjacent_3p } 0 16 {B59R:A -> B60R:U: adjacent_5p upward } 0 17 {B60R:U -> B59R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 B61R:U 0 1 B62R:A 0 2 B63R:C 0 3 B20R:A 0 4 B21R:G 0 5 B22R:A 0 6 B23R:A 0 [Edges] 0 {B20R:A -> B21R:G: adjacent_5p upward } 0 1 {B21R:G -> B20R:A: adjacent_3p downward } 0 2 {B20R:A -> B63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 3 {B63R:C -> B20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 4 {B21R:G -> B22R:A: adjacent_5p } 0 5 {B22R:A -> B21R:G: adjacent_3p } 0 6 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {B22R:A -> B23R:A: adjacent_5p upward } 0 9 {B23R:A -> B22R:A: adjacent_3p downward } 0 10 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 11 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 12 {B22R:A -> B62R:A: outward } 0 13 {B62R:A -> B22R:A: outward } 0 14 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {B61R:U -> B62R:A: adjacent_5p } 0 17 {B62R:A -> B61R:U: adjacent_3p } 0 18 {B62R:A -> B63R:C: adjacent_5p upward } 0 19 {B63R:C -> B62R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . 11 15 1 17 . 18 . 7 13 . 2 . 19 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 10 12 . . 5 . 8 6 14 . . . . 9 . [GraphModel] [Vertices] 0 D10R:A 0 1 D11R:C 0 2 D12R:A 0 3 E9R:A 0 4 E10R:A 0 5 E11R:G 0 6 E12R:U 0 [Edges] 0 {D10R:A -> D11R:C: adjacent_5p upward } 0 1 {D11R:C -> D10R:A: adjacent_3p downward } 0 2 {D10R:A -> E12R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E12R:U -> D10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D11R:C -> D12R:A: adjacent_5p } 0 5 {D12R:A -> D11R:C: adjacent_3p } 0 6 {D11R:C -> E11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E11R:G -> D11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D12R:A -> E9R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 9 {E9R:A -> D12R:A: pairing antiparallel trans one_hbond Hh/Ss } 0 10 {E9R:A -> E10R:A: adjacent_5p upward } 0 11 {E10R:A -> E9R:A: adjacent_3p downward } 0 12 {E10R:A -> E11R:G: adjacent_5p upward } 0 13 {E11R:G -> E10R:A: adjacent_3p downward } 0 14 {E11R:G -> E12R:U: adjacent_5p upward } 0 15 {E12R:U -> E11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E7R:A 0 1 E8R:G 0 2 E9R:A 0 3 D12R:A 0 4 D13R:G 0 5 D14R:U 0 6 D15R:C 0 [Edges] 0 {D12R:A -> D13R:G: adjacent_5p } 0 1 {D13R:G -> D12R:A: adjacent_3p } 0 2 {D12R:A -> E8R:G: inward } 0 3 {E8R:G -> D12R:A: inward } 0 4 {D12R:A -> E9R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {E9R:A -> D12R:A: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {D13R:G -> D14R:U: adjacent_5p } 0 7 {D14R:U -> D13R:G: adjacent_3p } 0 8 {D14R:U -> D15R:C: adjacent_5p upward } 0 9 {D15R:C -> D14R:U: adjacent_3p downward } 0 10 {D14R:U -> E8R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 11 {E8R:G -> D14R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 12 {D14R:U -> E9R:A: outward } 0 13 {E9R:A -> D14R:U: outward } 0 14 {D15R:C -> E7R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 15 {E7R:A -> D15R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 16 {E7R:A -> E8R:G: adjacent_5p upward } 0 17 {E8R:G -> E7R:A: adjacent_3p downward } 0 18 {E8R:G -> E9R:A: adjacent_5p } 0 19 {E9R:A -> E8R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 3 . 11 . 2 . 19 . 5 . 13 . 3 . 2 4 . 0 . . 4 . . . 1 . 6 . 5 . 10 12 . 7 . 8 6 14 . . . . 9 . [GraphModel] [Vertices] 0 E20R:A 0 1 E21R:G 0 2 E22R:A 0 3 E60R:U 0 4 E61R:U 0 5 E62R:A 0 6 E63R:C 0 [Edges] 0 {E20R:A -> E21R:G: adjacent_5p upward } 0 1 {E21R:G -> E20R:A: adjacent_3p downward } 0 2 {E20R:A -> E63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 3 {E63R:C -> E20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 4 {E21R:G -> E22R:A: adjacent_5p } 0 5 {E22R:A -> E21R:G: adjacent_3p } 0 6 {E21R:G -> E60R:U: inward } 0 7 {E60R:U -> E21R:G: inward } 0 8 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 9 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 10 {E22R:A -> E60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 11 {E60R:U -> E22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 12 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 13 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 14 {E22R:A -> E62R:A: outward } 0 15 {E62R:A -> E22R:A: outward } 0 16 {E60R:U -> E61R:U: adjacent_5p } 0 17 {E61R:U -> E60R:U: adjacent_3p } 0 18 {E61R:U -> E62R:A: adjacent_5p } 0 19 {E62R:A -> E61R:U: adjacent_3p } 0 20 {E62R:A -> E63R:C: adjacent_5p upward } 0 21 {E63R:C -> E62R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 6 . 8 . 2 . 5 . 10 12 14 . 3 . 7 11 . 16 . . 4 . . 13 17 . 18 . 5 . 9 15 . 19 . 20 6 3 . . . . 21 . [GraphModel] [Vertices] 0 E21R:G 0 1 E22R:A 0 2 E23R:A 0 3 E59R:A 0 4 E60R:U 0 5 E61R:U 0 6 E62R:A 0 [Edges] 0 {E21R:G -> E22R:A: adjacent_5p } 0 1 {E22R:A -> E21R:G: adjacent_3p } 0 2 {E21R:G -> E60R:U: inward } 0 3 {E60R:U -> E21R:G: inward } 0 4 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {E22R:A -> E23R:A: adjacent_5p upward } 0 7 {E23R:A -> E22R:A: adjacent_3p downward } 0 8 {E22R:A -> E60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 9 {E60R:U -> E22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 10 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 11 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 12 {E22R:A -> E62R:A: outward } 0 13 {E62R:A -> E22R:A: outward } 0 14 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 15 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 16 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {E59R:A -> E60R:U: adjacent_5p upward } 0 19 {E60R:U -> E59R:A: adjacent_3p downward } 0 20 {E60R:U -> E61R:U: adjacent_5p } 0 21 {E61R:U -> E60R:U: adjacent_3p } 0 22 {E61R:U -> E62R:A: adjacent_5p } 0 23 {E62R:A -> E61R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . 8 10 12 2 . 7 . 14 . 16 . 3 . . 15 . 18 . . 4 3 9 . 19 . 20 . 5 . 11 17 . 21 . 22 6 5 13 . . . 23 . [GraphModel] [Vertices] 0 E22R:A 0 1 E23R:A 0 2 E24R:A 0 3 E57R:A 0 4 E58R:U 0 5 E59R:A 0 6 E60R:U 0 [Edges] 0 {E22R:A -> E23R:A: adjacent_5p upward } 0 1 {E23R:A -> E22R:A: adjacent_3p downward } 0 2 {E22R:A -> E60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {E60R:U -> E22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {E23R:A -> E24R:A: adjacent_5p upward } 0 5 {E24R:A -> E23R:A: adjacent_3p downward } 0 6 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 7 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 8 {E24R:A -> E57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 9 {E57R:A -> E24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 10 {E57R:A -> E58R:U: adjacent_5p } 0 11 {E58R:U -> E57R:A: adjacent_3p } 0 12 {E57R:A -> E59R:A: upward } 0 13 {E59R:A -> E57R:A: downward } 0 14 {E58R:U -> E59R:A: adjacent_5p } 0 15 {E59R:A -> E58R:U: adjacent_3p } 0 16 {E59R:A -> E60R:U: adjacent_5p upward } 0 17 {E60R:U -> E59R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 E61R:U 0 1 E62R:A 0 2 E63R:C 0 3 E20R:A 0 4 E21R:G 0 5 E22R:A 0 6 E23R:A 0 [Edges] 0 {E20R:A -> E21R:G: adjacent_5p upward } 0 1 {E21R:G -> E20R:A: adjacent_3p downward } 0 2 {E20R:A -> E63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 3 {E63R:C -> E20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 4 {E21R:G -> E22R:A: adjacent_5p } 0 5 {E22R:A -> E21R:G: adjacent_3p } 0 6 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 7 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 8 {E22R:A -> E23R:A: adjacent_5p upward } 0 9 {E23R:A -> E22R:A: adjacent_3p downward } 0 10 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 11 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 12 {E22R:A -> E62R:A: outward } 0 13 {E62R:A -> E22R:A: outward } 0 14 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {E61R:U -> E62R:A: adjacent_5p } 0 17 {E62R:A -> E61R:U: adjacent_3p } 0 18 {E62R:A -> E63R:C: adjacent_5p upward } 0 19 {E63R:C -> E62R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . 11 15 1 17 . 18 . 7 13 . 2 . 19 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 10 12 . . 5 . 8 6 14 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:C 0 3 A26R:G 0 4 A27R:G 0 5 A28R:A 0 6 A29R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:G: adjacent_3p } 0 2 {A12R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 7 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 8 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 11 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 12 {A26R:G -> A27R:G: adjacent_5p } 0 13 {A27R:G -> A26R:G: adjacent_3p } 0 14 {A27R:G -> A28R:A: adjacent_5p } 0 15 {A28R:A -> A27R:G: adjacent_3p } 0 16 {A28R:A -> A29R:C: adjacent_5p } 0 17 {A29R:C -> A28R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 6 . 8 . 2 . 5 . 10 . . . 3 . 7 11 . 12 . . 4 . . . 13 . 14 . 5 . 9 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:U 0 2 A16R:U 0 3 A23R:A 0 4 A24R:A 0 5 A25R:G 0 6 A26R:G 0 [Edges] 0 {A14R:C -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 5 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 6 {A15R:U -> A16R:U: adjacent_5p } 0 7 {A16R:U -> A15R:U: adjacent_3p } 0 8 {A15R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A24R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A15R:U -> A25R:G: outward } 0 11 {A25R:G -> A15R:U: outward } 0 12 {A16R:U -> A23R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A23R:A -> A16R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A23R:A -> A24R:A: adjacent_5p upward } 0 15 {A24R:A -> A23R:A: adjacent_3p downward } 0 16 {A24R:A -> A25R:G: adjacent_5p upward } 0 17 {A25R:G -> A24R:A: adjacent_3p downward } 0 18 {A25R:G -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . 8 10 . 2 . 7 . 12 . . . 3 . . 13 . 14 . . 4 . 9 . 15 . 16 . 5 3 11 . . 17 . 18 6 5 . . . . 19 . [GraphModel] [Vertices] 0 A32R:G 0 1 A33R:G 0 2 A34R:G 0 3 A6R:G 0 4 A7R:G 0 5 A8R:A 0 6 A9R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:G: adjacent_3p } 0 2 {A6R:G -> A8R:A: outward } 0 3 {A8R:A -> A6R:G: outward } 0 4 {A6R:G -> A34R:G: pairing parallel trans III Ww/Ww } 0 5 {A34R:G -> A6R:G: pairing parallel trans III Ww/Ww } 0 6 {A7R:G -> A8R:A: adjacent_5p } 0 7 {A8R:A -> A7R:G: adjacent_3p } 0 8 {A8R:A -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:A: adjacent_3p downward } 0 10 {A8R:A -> A33R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {A33R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A9R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A32R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A32R:G -> A33R:G: adjacent_5p upward } 0 15 {A33R:G -> A32R:G: adjacent_3p downward } 0 16 {A33R:G -> A34R:G: adjacent_5p upward } 0 17 {A34R:G -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A34R:G 0 1 A35R:G 0 2 A36R:C 0 3 A3R:G 0 4 A4R:C 0 5 A5R:A 0 6 A6R:G 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A36R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A35R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:G: adjacent_5p inward } 0 9 {A6R:G -> A5R:A: adjacent_3p inward } 0 10 {A6R:G -> A34R:G: pairing parallel trans III Ww/Ww } 0 11 {A34R:G -> A6R:G: pairing parallel trans III Ww/Ww } 0 12 {A34R:G -> A35R:G: adjacent_5p } 0 13 {A35R:G -> A34R:G: adjacent_3p } 0 14 {A35R:G -> A36R:C: adjacent_5p upward } 0 15 {A36R:C -> A35R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:A 0 2 A8R:G 0 3 A17R:C 0 4 A18R:U 0 5 A19R:U 0 6 A20R:G 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A19R:U: pairing antiparallel cis one_hbond Bs/Wh } 0 7 {A19R:U -> A7R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 8 {A7R:A -> A20R:G: outward } 0 9 {A20R:G -> A7R:A: outward } 0 10 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:C -> A18R:U: adjacent_5p upward } 0 13 {A18R:U -> A17R:C: adjacent_3p downward } 0 14 {A18R:U -> A19R:U: adjacent_5p } 0 15 {A19R:U -> A18R:U: adjacent_3p } 0 16 {A19R:U -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:G 0 2 A9R:G 0 3 A16R:C 0 4 A17R:C 0 5 A18R:U 0 6 A19R:U 0 [Edges] 0 {A7R:A -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A19R:U: pairing antiparallel cis one_hbond Bs/Wh } 0 3 {A19R:U -> A7R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 4 {A8R:G -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A16R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:C -> A17R:C: adjacent_5p } 0 11 {A17R:C -> A16R:C: adjacent_3p } 0 12 {A17R:C -> A18R:U: adjacent_5p upward } 0 13 {A18R:U -> A17R:C: adjacent_3p downward } 0 14 {A18R:U -> A19R:U: adjacent_5p } 0 15 {A19R:U -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:A 0 2 A16R:G 0 3 A7R:C 0 4 A8R:U 0 5 A9R:C 0 6 A10R:U 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:U: adjacent_3p } 0 6 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:C -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:U -> A14R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 13 {A14R:G -> A10R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 14 {A14R:G -> A15R:A: adjacent_5p upward } 0 15 {A15R:A -> A14R:G: adjacent_3p downward } 0 16 {A15R:A -> A16R:G: adjacent_5p upward } 0 17 {A16R:G -> A15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . 11 13 1 15 . 16 . 7 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 10 . . . 5 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A16R:G 0 1 A17R:C 0 2 A18R:A 0 3 A6R:U 0 4 A7R:U 0 5 A8R:G 0 6 A9R:C 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:U: adjacent_3p } 0 6 {A8R:G -> A9R:C: adjacent_5p upward } 0 7 {A9R:C -> A8R:G: adjacent_3p downward } 0 8 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A8R:G -> A18R:A: outward } 0 11 {A18R:A -> A8R:G: outward } 0 12 {A9R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:G -> A17R:C: adjacent_5p upward } 0 15 {A17R:C -> A16R:G: adjacent_3p downward } 0 16 {A17R:C -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:A 0 2 A19R:C 0 3 A5R:G 0 4 A6R:U 0 5 A7R:U 0 6 A8R:G 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> A8R:G: adjacent_5p } 0 9 {A8R:G -> A7R:U: adjacent_3p } 0 10 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> A18R:A: outward } 0 13 {A18R:A -> A8R:G: outward } 0 14 {A17R:C -> A18R:A: adjacent_5p upward } 0 15 {A18R:A -> A17R:C: adjacent_3p downward } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A27R:U 0 1 A28R:C 0 2 A29R:G 0 3 A3R:U 0 4 A4R:A 0 5 A5R:G 0 6 A6R:A 0 [Edges] 0 {A3R:U -> A4R:A: adjacent_5p } 0 1 {A4R:A -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A29R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A5R:G -> A6R:A: adjacent_5p upward } 0 7 {A6R:A -> A5R:G: adjacent_3p downward } 0 8 {A5R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A28R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A6R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A27R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A27R:U -> A28R:C: adjacent_5p upward } 0 13 {A28R:C -> A27R:U: adjacent_3p downward } 0 14 {A28R:C -> A29R:G: adjacent_5p } 0 15 {A29R:G -> A28R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A2665R:A 0 1 A2666R:C 0 2 A2667R:C 0 3 A2653R:U 0 4 A2654R:A 0 5 A2655R:G 0 6 A2656R:U 0 [Edges] 0 {A2653R:U -> A2654R:A: adjacent_5p inward } 0 1 {A2654R:A -> A2653R:U: adjacent_3p inward } 0 2 {A2653R:U -> A2667R:C: pairing antiparallel trans one_hbond 100 Ws/Bh } 0 3 {A2667R:C -> A2653R:U: pairing antiparallel trans one_hbond 100 Bh/Ws } 0 4 {A2654R:A -> A2655R:G: adjacent_5p } 0 5 {A2655R:G -> A2654R:A: adjacent_3p } 0 6 {A2654R:A -> A2656R:U: outward } 0 7 {A2656R:U -> A2654R:A: outward } 0 8 {A2655R:G -> A2656R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {A2656R:U -> A2655R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {A2656R:U -> A2665R:A: pairing antiparallel trans XXIV Ww/Hh } 0 11 {A2665R:A -> A2656R:U: pairing antiparallel trans XXIV Hh/Ww } 0 12 {A2665R:A -> A2666R:C: adjacent_5p upward } 0 13 {A2666R:C -> A2665R:A: adjacent_3p downward } 0 14 {A2666R:C -> A2667R:C: adjacent_5p upward } 0 15 {A2667R:C -> A2666R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 6 5 . . . . 5 . 8 6 10 . . . 7 9 . MOLECULE: [GraphModel] [Vertices] 0 C513R:U 0 1 C514R:A 0 2 C515R:G 0 3 C520R:U 0 4 C520.AR:U 0 5 C521R:A 0 6 C522R:G 0 [Edges] 0 {C513R:U -> C514R:A: adjacent_5p } 0 1 {C514R:A -> C513R:U: adjacent_3p } 0 2 {C513R:U -> C522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C522R:G -> C513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C514R:A -> C515R:G: adjacent_5p upward } 0 5 {C515R:G -> C514R:A: adjacent_3p downward } 0 6 {C514R:A -> C521R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 7 {C521R:A -> C514R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 8 {C514R:A -> C522R:G: outward } 0 9 {C522R:G -> C514R:A: outward } 0 10 {C515R:G -> C520R:U: pairing antiparallel cis one_hbond Sw/Wh } 0 11 {C520R:U -> C515R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 12 {C520R:U -> C520.AR:U: adjacent_5p } 0 13 {C520.AR:U -> C520R:U: adjacent_3p } 0 14 {C520.AR:U -> C521R:A: adjacent_5p } 0 15 {C521R:A -> C520.AR:U: adjacent_3p } 0 16 {C521R:A -> C522R:G: adjacent_5p } 0 17 {C522R:G -> C521R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 D513R:U 0 1 D514R:A 0 2 D515R:G 0 3 D520R:U 0 4 D520.AR:U 0 5 D521R:A 0 6 D522R:G 0 [Edges] 0 {D513R:U -> D514R:A: adjacent_5p } 0 1 {D514R:A -> D513R:U: adjacent_3p } 0 2 {D513R:U -> D522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D522R:G -> D513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {D514R:A -> D515R:G: adjacent_5p upward } 0 5 {D515R:G -> D514R:A: adjacent_3p downward } 0 6 {D514R:A -> D521R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 7 {D521R:A -> D514R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 8 {D514R:A -> D522R:G: outward } 0 9 {D522R:G -> D514R:A: outward } 0 10 {D515R:G -> D520R:U: pairing antiparallel cis one_hbond Sw/Wh } 0 11 {D520R:U -> D515R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 12 {D520R:U -> D520.AR:U: adjacent_5p } 0 13 {D520.AR:U -> D520R:U: adjacent_3p } 0 14 {D520.AR:U -> D521R:A: adjacent_5p } 0 15 {D521R:A -> D520.AR:U: adjacent_3p } 0 16 {D521R:A -> D522R:G: adjacent_5p } 0 17 {D522R:G -> D521R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:A 0 2 A13R:C 0 3 A17R:G 0 4 A18R:C 0 5 A19R:U 0 6 A20R:U 0 [Edges] 0 {A11R:A -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> A20R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A20R:U -> A11R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A12R:A -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A17R:G -> A18R:C: adjacent_5p } 0 11 {A18R:C -> A17R:G: adjacent_3p } 0 12 {A17R:G -> A19R:U: upward } 0 13 {A19R:U -> A17R:G: downward } 0 14 {A18R:C -> A19R:U: adjacent_5p } 0 15 {A19R:U -> A18R:C: adjacent_3p } 0 16 {A19R:U -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:A 0 2 A24R:C 0 3 A6R:G 0 4 A7R:C 0 5 A8R:U 0 6 A9R:U 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:G: adjacent_3p } 0 2 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A8R:U -> A9R:U: adjacent_5p upward } 0 7 {A9R:U -> A8R:U: adjacent_3p downward } 0 8 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A9R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A22R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A22R:G -> A23R:A: adjacent_5p upward } 0 13 {A23R:A -> A22R:G: adjacent_3p downward } 0 14 {A23R:A -> A24R:C: adjacent_5p upward } 0 15 {A24R:C -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:C 0 2 A25R:G 0 3 A5R:U 0 4 A6R:G 0 5 A7R:C 0 6 A8R:U 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:U: adjacent_3p } 0 2 {A5R:U -> A25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A25R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:G -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:G: adjacent_3p } 0 6 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:C: adjacent_3p } 0 10 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A23R:A -> A24R:C: adjacent_5p upward } 0 13 {A24R:C -> A23R:A: adjacent_3p downward } 0 14 {A24R:C -> A25R:G: adjacent_5p } 0 15 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:C 0 3 A17R:G 0 4 A18R:A 0 5 A19R:G 0 6 A20R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A17R:G -> A18R:A: adjacent_5p upward } 0 11 {A18R:A -> A17R:G: adjacent_3p downward } 0 12 {A18R:A -> A19R:G: adjacent_5p upward } 0 13 {A19R:G -> A18R:A: adjacent_3p downward } 0 14 {A19R:G -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:C 0 3 A16R:G 0 4 A17R:G 0 5 A18R:A 0 6 A19R:G 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:G -> A17R:G: adjacent_5p upward } 0 11 {A17R:G -> A16R:G: adjacent_3p downward } 0 12 {A17R:G -> A18R:A: adjacent_5p upward } 0 13 {A18R:A -> A17R:G: adjacent_3p downward } 0 14 {A18R:A -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:U 0 2 A10R:G 0 3 A13R:U 0 4 A14R:A 0 5 A15R:A 0 6 A16R:G 0 [Edges] 0 {A8R:C -> A9R:U: adjacent_5p } 0 1 {A9R:U -> A8R:C: adjacent_3p } 0 2 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:U: adjacent_3p downward } 0 6 {A10R:G -> A13R:U: pairing antiparallel cis one_hbond 85 Sw/Ws } 0 7 {A13R:U -> A10R:G: pairing antiparallel cis one_hbond 85 Ws/Sw } 0 8 {A10R:G -> A14R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {A14R:A -> A10R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A13R:U -> A14R:A: adjacent_5p } 0 11 {A14R:A -> A13R:U: adjacent_3p } 0 12 {A14R:A -> A15R:A: adjacent_5p upward } 0 13 {A15R:A -> A14R:A: adjacent_3p downward } 0 14 {A15R:A -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 8 . . 3 . . 7 . 10 . . 4 . . 9 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A15R:C 0 1 A16R:U 0 2 A17R:U 0 3 B108R:A 0 4 B109R:C 0 5 B110R:G 0 6 B111R:G 0 [Edges] 0 {A15R:C -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:C: adjacent_3p downward } 0 2 {A15R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B111R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:U: adjacent_5p } 0 5 {A17R:U -> A16R:U: adjacent_3p } 0 6 {A17R:U -> B108R:A: pairing antiparallel trans one_hbond 46 Ws/Bh } 0 7 {B108R:A -> A17R:U: pairing antiparallel trans one_hbond 46 Bh/Ws } 0 8 {B108R:A -> B109R:C: adjacent_5p } 0 9 {B109R:C -> B108R:A: adjacent_3p } 0 10 {B108R:A -> B110R:G: upward } 0 11 {B110R:G -> B108R:A: downward } 0 12 {B109R:C -> B110R:G: adjacent_5p } 0 13 {B110R:G -> B109R:C: adjacent_3p } 0 14 {B110R:G -> B111R:G: adjacent_5p upward } 0 15 {B111R:G -> B110R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 10 . 4 . . . 9 . 12 . 5 . . . 11 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A17R:U 0 1 A18R:C 0 2 A19R:U 0 3 B105R:A 0 4 B106R:C 0 5 B107R:C 0 6 B108R:A 0 [Edges] 0 {A17R:U -> A18R:C: adjacent_5p } 0 1 {A18R:C -> A17R:U: adjacent_3p } 0 2 {A17R:U -> B107R:C: upward } 0 3 {B107R:C -> A17R:U: downward } 0 4 {A17R:U -> B108R:A: pairing antiparallel trans one_hbond 46 Ws/Bh } 0 5 {B108R:A -> A17R:U: pairing antiparallel trans one_hbond 46 Bh/Ws } 0 6 {A18R:C -> A19R:U: adjacent_5p } 0 7 {A19R:U -> A18R:C: adjacent_3p } 0 8 {A19R:U -> B105R:A: pairing antiparallel cis Ww/Ww } 0 9 {B105R:A -> A19R:U: pairing antiparallel cis Ww/Ww } 0 10 {B105R:A -> B106R:C: adjacent_5p upward } 0 11 {B106R:C -> B105R:A: adjacent_3p downward } 0 12 {B106R:C -> B107R:C: adjacent_5p } 0 13 {B107R:C -> B106R:C: adjacent_3p } 0 14 {B107R:C -> B108R:A: adjacent_5p } 0 15 {B108R:A -> B107R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 3 . . . 13 . 14 6 5 . . . . 15 . [GraphModel] [Vertices] 0 B114R:G 0 1 B115R:G 0 2 B116R:A 0 3 A4R:U 0 4 A5R:C 0 5 A6R:G 0 6 A7R:C 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B116R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B116R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:C: adjacent_3p } 0 6 {A5R:C -> B115R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B115R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:C: adjacent_5p downward } 0 9 {A7R:C -> A6R:G: adjacent_3p upward } 0 10 {A7R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B114R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:C -> B115R:G: outward } 0 13 {B115R:G -> A7R:C: outward } 0 14 {B114R:G -> B115R:G: adjacent_5p upward } 0 15 {B115R:G -> B114R:G: adjacent_3p downward } 0 16 {B115R:G -> B116R:A: adjacent_5p upward } 0 17 {B116R:A -> B115R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C22R:G 0 1 C23R:G 0 2 C24R:C 0 3 C6R:U 0 4 C7R:U 0 5 C8R:G 0 6 C9R:A 0 [Edges] 0 {C6R:U -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:U: adjacent_3p downward } 0 2 {C6R:U -> C24R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {C24R:C -> C6R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {C7R:U -> C8R:G: adjacent_5p } 0 5 {C8R:G -> C7R:U: adjacent_3p } 0 6 {C8R:G -> C9R:A: adjacent_5p } 0 7 {C9R:A -> C8R:G: adjacent_3p } 0 8 {C8R:G -> C23R:G: inward } 0 9 {C23R:G -> C8R:G: inward } 0 10 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {C22R:G -> C23R:G: adjacent_5p } 0 13 {C23R:G -> C22R:G: adjacent_3p } 0 14 {C23R:G -> C24R:C: adjacent_5p } 0 15 {C24R:C -> C23R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 D22R:G 0 1 D23R:G 0 2 D24R:C 0 3 D6R:U 0 4 D7R:U 0 5 D8R:G 0 6 D9R:A 0 [Edges] 0 {D6R:U -> D7R:U: adjacent_5p upward } 0 1 {D7R:U -> D6R:U: adjacent_3p downward } 0 2 {D6R:U -> D24R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {D24R:C -> D6R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {D7R:U -> D8R:G: adjacent_5p } 0 5 {D8R:G -> D7R:U: adjacent_3p } 0 6 {D8R:G -> D9R:A: adjacent_5p } 0 7 {D9R:A -> D8R:G: adjacent_3p } 0 8 {D8R:G -> D23R:G: inward } 0 9 {D23R:G -> D8R:G: inward } 0 10 {D9R:A -> D22R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {D22R:G -> D9R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {D22R:G -> D23R:G: adjacent_5p } 0 13 {D23R:G -> D22R:G: adjacent_3p } 0 14 {D23R:G -> D24R:C: adjacent_5p } 0 15 {D24R:C -> D23R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:G 0 2 A19R:A 0 3 A5R:G 0 4 A6R:A 0 5 A7R:A 0 6 A8R:G 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A18R:G: inward } 0 3 {A18R:G -> A5R:G: inward } 0 4 {A5R:G -> A19R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {A19R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A6R:A -> A7R:A: adjacent_5p upward } 0 7 {A7R:A -> A6R:A: adjacent_3p downward } 0 8 {A6R:A -> A19R:A: outward } 0 9 {A19R:A -> A6R:A: outward } 0 10 {A7R:A -> A8R:G: adjacent_5p upward } 0 11 {A8R:G -> A7R:A: adjacent_3p downward } 0 12 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:C -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:C: adjacent_3p downward } 0 16 {A18R:G -> A19R:A: adjacent_5p } 0 17 {A19R:A -> A18R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 3 . . . 2 . 17 . 5 9 . . 3 . 2 4 . 0 . . 4 . . 8 1 . 6 . 5 . . . . 7 . 10 6 12 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:U 0 2 A20R:C 0 3 A41R:G 0 4 A42R:U 0 5 A43R:G 0 6 A44R:C 0 [Edges] 0 {A18R:G -> A19R:U: adjacent_5p upward } 0 1 {A19R:U -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> A44R:C: pairing antiparallel cis Ww/Ww } 0 3 {A44R:C -> A18R:G: pairing antiparallel cis Ww/Ww } 0 4 {A19R:U -> A20R:C: adjacent_5p } 0 5 {A20R:C -> A19R:U: adjacent_3p } 0 6 {A19R:U -> A43R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A43R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A41R:G -> A42R:U: adjacent_5p } 0 11 {A42R:U -> A41R:G: adjacent_3p } 0 12 {A41R:G -> A43R:G: upward } 0 13 {A43R:G -> A41R:G: downward } 0 14 {A42R:U -> A43R:G: adjacent_5p } 0 15 {A43R:G -> A42R:U: adjacent_3p } 0 16 {A43R:G -> A44R:C: adjacent_5p upward } 0 17 {A44R:C -> A43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:C 0 2 A21R:U 0 3 A40R:C 0 4 A41R:G 0 5 A42R:U 0 6 A43R:G 0 [Edges] 0 {A19R:U -> A20R:C: adjacent_5p } 0 1 {A20R:C -> A19R:U: adjacent_3p } 0 2 {A19R:U -> A43R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A43R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A20R:C -> A21R:U: adjacent_5p upward } 0 5 {A21R:U -> A20R:C: adjacent_3p downward } 0 6 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:U -> A40R:C: pairing antiparallel cis XVIII Ww/Ww } 0 9 {A40R:C -> A21R:U: pairing antiparallel cis XVIII Ww/Ww } 0 10 {A40R:C -> A41R:G: adjacent_5p } 0 11 {A41R:G -> A40R:C: adjacent_3p } 0 12 {A41R:G -> A42R:U: adjacent_5p } 0 13 {A42R:U -> A41R:G: adjacent_3p } 0 14 {A41R:G -> A43R:G: upward } 0 15 {A43R:G -> A41R:G: downward } 0 16 {A42R:U -> A43R:G: adjacent_5p } 0 17 {A43R:G -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A49R:U 0 1 A50R:C 0 2 A51R:C 0 3 A5R:G 0 4 A6R:U 0 5 A7R:G 0 6 A8R:A 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A7R:G: upward } 0 3 {A7R:G -> A5R:G: downward } 0 4 {A5R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A51R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A6R:U -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:U: adjacent_3p } 0 8 {A7R:G -> A8R:A: adjacent_5p upward } 0 9 {A8R:A -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A50R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:A -> A49R:U: pairing antiparallel cis XX Ww/Ws } 0 13 {A49R:U -> A8R:A: pairing antiparallel cis XX Ws/Ww } 0 14 {A49R:U -> A50R:C: adjacent_5p upward } 0 15 {A50R:C -> A49R:U: adjacent_3p downward } 0 16 {A50R:C -> A51R:C: adjacent_5p upward } 0 17 {A51R:C -> A50R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A50R:C 0 1 A51R:C 0 2 A52R:A 0 3 A4R:U 0 4 A5R:G 0 5 A6R:U 0 6 A7R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A52R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A52R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A7R:G: upward } 0 7 {A7R:G -> A5R:G: downward } 0 8 {A5R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A51R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A5R:G -> A52R:A: outward } 0 11 {A52R:A -> A5R:G: outward } 0 12 {A6R:U -> A7R:G: adjacent_5p } 0 13 {A7R:G -> A6R:U: adjacent_3p } 0 14 {A7R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A50R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A50R:C -> A51R:C: adjacent_5p upward } 0 17 {A51R:C -> A50R:C: adjacent_3p downward } 0 18 {A51R:C -> A52R:A: adjacent_5p upward } 0 19 {A52R:A -> A51R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 . 9 . . 2 . 19 . 3 11 . . 3 . . 2 . 0 . . 4 . 8 10 1 . 4 6 5 . . . . 5 . 12 6 14 . . . 7 13 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:A 0 3 A27R:A 0 4 A28R:G 0 5 A29R:U 0 6 A30R:A 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A30R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A30R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A6R:A -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A29R:U: pairing antiparallel trans XXIV Hh/Ww } 0 7 {A29R:U -> A6R:A: pairing antiparallel trans XXIV Ww/Hh } 0 8 {A6R:A -> A30R:A: outward } 0 9 {A30R:A -> A6R:A: outward } 0 10 {A7R:A -> A27R:A: pairing parallel trans II Hh/Hh } 0 11 {A27R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 12 {A27R:A -> A28R:G: adjacent_5p } 0 13 {A28R:G -> A27R:A: adjacent_3p } 0 14 {A27R:A -> A29R:U: outward } 0 15 {A29R:U -> A27R:A: outward } 0 16 {A28R:G -> A29R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {A29R:U -> A28R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 18 {A29R:U -> A30R:A: adjacent_5p } 0 19 {A30R:A -> A29R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A8R:A 0 3 A26R:U 0 4 A27R:A 0 5 A28R:G 0 6 A29R:U 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A29R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {A29R:U -> A6R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {A7R:A -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A27R:A: pairing parallel trans II Hh/Hh } 0 7 {A27R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 8 {A8R:A -> A26R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 9 {A26R:U -> A8R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 10 {A26R:U -> A27R:A: adjacent_5p inward } 0 11 {A27R:A -> A26R:U: adjacent_3p inward } 0 12 {A27R:A -> A28R:G: adjacent_5p } 0 13 {A28R:G -> A27R:A: adjacent_3p } 0 14 {A27R:A -> A29R:U: outward } 0 15 {A29R:U -> A27R:A: outward } 0 16 {A28R:G -> A29R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {A29R:U -> A28R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:A 0 2 A9R:G 0 3 A69R:C 0 4 A70R:C 0 5 A71R:U 0 6 A72R:C 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A72R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A71R:U: pairing antiparallel cis Ww/Ws } 0 7 {A71R:U -> A8R:A: pairing antiparallel cis Ws/Ww } 0 8 {A9R:G -> A69R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {A69R:C -> A9R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {A9R:G -> A70R:C: pairing antiparallel cis Ww/Ww } 0 11 {A70R:C -> A9R:G: pairing antiparallel cis Ww/Ww } 0 12 {A69R:C -> A70R:C: adjacent_5p upward } 0 13 {A70R:C -> A69R:C: adjacent_3p downward } 0 14 {A70R:C -> A71R:U: adjacent_5p upward } 0 15 {A71R:U -> A70R:C: adjacent_3p downward } 0 16 {A71R:U -> A72R:C: adjacent_5p upward } 0 17 {A72R:C -> A71R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . . 11 13 . 14 . 5 . 7 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:U 0 2 A20R:C 0 3 A63R:G 0 4 A64R:U 0 5 A65R:G 0 6 A66R:C 0 [Edges] 0 {A18R:G -> A19R:U: adjacent_5p upward } 0 1 {A19R:U -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> A66R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A66R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:U -> A20R:C: adjacent_5p } 0 5 {A20R:C -> A19R:U: adjacent_3p } 0 6 {A19R:U -> A65R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A65R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A20R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A63R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A63R:G -> A64R:U: adjacent_5p } 0 11 {A64R:U -> A63R:G: adjacent_3p } 0 12 {A63R:G -> A65R:G: upward } 0 13 {A65R:G -> A63R:G: downward } 0 14 {A64R:U -> A65R:G: adjacent_5p } 0 15 {A65R:G -> A64R:U: adjacent_3p } 0 16 {A65R:G -> A66R:C: adjacent_5p upward } 0 17 {A66R:C -> A65R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:C 0 2 A21R:U 0 3 A62R:C 0 4 A63R:G 0 5 A64R:U 0 6 A65R:G 0 [Edges] 0 {A19R:U -> A20R:C: adjacent_5p } 0 1 {A20R:C -> A19R:U: adjacent_3p } 0 2 {A19R:U -> A65R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A65R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A20R:C -> A21R:U: adjacent_5p upward } 0 5 {A21R:U -> A20R:C: adjacent_3p downward } 0 6 {A20R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A63R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:U -> A62R:C: pairing antiparallel cis XVIII Ww/Ww } 0 9 {A62R:C -> A21R:U: pairing antiparallel cis XVIII Ww/Ww } 0 10 {A62R:C -> A63R:G: adjacent_5p upward } 0 11 {A63R:G -> A62R:C: adjacent_3p downward } 0 12 {A63R:G -> A64R:U: adjacent_5p } 0 13 {A64R:U -> A63R:G: adjacent_3p } 0 14 {A63R:G -> A65R:G: upward } 0 15 {A65R:G -> A63R:G: downward } 0 16 {A64R:U -> A65R:G: adjacent_5p } 0 17 {A65R:G -> A64R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 A29R:G 0 1 A30R:A 0 2 A31R:A 0 3 A51R:A 0 4 A52R:G 0 5 A53R:U 0 6 A54R:A 0 [Edges] 0 {A29R:G -> A30R:A: adjacent_5p } 0 1 {A30R:A -> A29R:G: adjacent_3p } 0 2 {A29R:G -> A54R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A54R:A -> A29R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A30R:A -> A31R:A: adjacent_5p upward } 0 5 {A31R:A -> A30R:A: adjacent_3p downward } 0 6 {A30R:A -> A53R:U: pairing antiparallel trans XXIV Hh/Ww } 0 7 {A53R:U -> A30R:A: pairing antiparallel trans XXIV Ww/Hh } 0 8 {A30R:A -> A54R:A: outward } 0 9 {A54R:A -> A30R:A: outward } 0 10 {A31R:A -> A51R:A: pairing parallel trans II Hh/Hh } 0 11 {A51R:A -> A31R:A: pairing parallel trans II Hh/Hh } 0 12 {A51R:A -> A52R:G: adjacent_5p } 0 13 {A52R:G -> A51R:A: adjacent_3p } 0 14 {A51R:A -> A53R:U: outward } 0 15 {A53R:U -> A51R:A: outward } 0 16 {A52R:G -> A53R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {A53R:U -> A52R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 18 {A53R:U -> A54R:A: adjacent_5p } 0 19 {A54R:A -> A53R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A71R:U 0 1 A72R:C 0 2 A73R:C 0 3 A5R:G 0 4 A6R:U 0 5 A7R:G 0 6 A8R:A 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A7R:G: upward } 0 3 {A7R:G -> A5R:G: downward } 0 4 {A5R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A73R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A6R:U -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:U: adjacent_3p } 0 8 {A7R:G -> A8R:A: adjacent_5p upward } 0 9 {A8R:A -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A72R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:A -> A71R:U: pairing antiparallel cis Ww/Ws } 0 13 {A71R:U -> A8R:A: pairing antiparallel cis Ws/Ww } 0 14 {A71R:U -> A72R:C: adjacent_5p upward } 0 15 {A72R:C -> A71R:U: adjacent_3p downward } 0 16 {A72R:C -> A73R:C: adjacent_5p upward } 0 17 {A73R:C -> A72R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A72R:C 0 1 A73R:C 0 2 A74R:A 0 3 A4R:U 0 4 A5R:G 0 5 A6R:U 0 6 A7R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A74R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A74R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A7R:G: upward } 0 7 {A7R:G -> A5R:G: downward } 0 8 {A5R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A73R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A5R:G -> A74R:A: outward } 0 11 {A74R:A -> A5R:G: outward } 0 12 {A6R:U -> A7R:G: adjacent_5p } 0 13 {A7R:G -> A6R:U: adjacent_3p } 0 14 {A7R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A72R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A72R:C -> A73R:C: adjacent_5p upward } 0 17 {A73R:C -> A72R:C: adjacent_3p downward } 0 18 {A73R:C -> A74R:A: adjacent_5p upward } 0 19 {A74R:A -> A73R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 . 9 . . 2 . 19 . 3 11 . . 3 . . 2 . 0 . . 4 . 8 10 1 . 4 6 5 . . . . 5 . 12 6 14 . . . 7 13 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:C 0 2 A6R:U 0 3 A9R:G 0 4 A10R:U 0 5 A11R:G 0 6 A12R:A 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A12R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A11R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A9R:G: pairing parallel trans 87 Bs/Ww } 0 9 {A9R:G -> A6R:U: pairing parallel trans 87 Ww/Bs } 0 10 {A9R:G -> A10R:U: adjacent_5p } 0 11 {A10R:U -> A9R:G: adjacent_3p } 0 12 {A10R:U -> A11R:G: adjacent_5p } 0 13 {A11R:G -> A10R:U: adjacent_3p } 0 14 {A11R:G -> A12R:A: adjacent_5p upward } 0 15 {A12R:A -> A11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A26R:A 0 1 A27R:A 0 2 A28R:C 0 3 A8R:G 0 4 A9R:A 0 5 A10R:C 0 6 A11R:U 0 [Edges] 0 {A8R:G -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:G: adjacent_3p } 0 2 {A8R:G -> A10R:C: upward } 0 3 {A10R:C -> A8R:G: downward } 0 4 {A8R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A28R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A9R:A -> A10R:C: adjacent_5p } 0 7 {A10R:C -> A9R:A: adjacent_3p } 0 8 {A10R:C -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:C: adjacent_3p downward } 0 10 {A11R:U -> A26R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 11 {A26R:A -> A11R:U: pairing antiparallel cis one_hbond Wh/Ss } 0 12 {A26R:A -> A27R:A: adjacent_5p upward } 0 13 {A27R:A -> A26R:A: adjacent_3p downward } 0 14 {A27R:A -> A28R:C: adjacent_5p upward } 0 15 {A28R:C -> A27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . . . 2 . 15 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . . . 3 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:A 0 2 A21R:A 0 3 A9R:A 0 4 A10R:G 0 5 A11R:U 0 6 A12R:A 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A11R:U: outward } 0 3 {A11R:U -> A9R:A: outward } 0 4 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 5 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 6 {A10R:G -> A11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A11R:U -> A10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A10R:G -> A19R:G: inward } 0 9 {A19R:G -> A10R:G: inward } 0 10 {A11R:U -> A12R:A: adjacent_5p upward } 0 11 {A12R:A -> A11R:U: adjacent_3p downward } 0 12 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A12R:A -> A19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {A19R:G -> A12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A12R:A -> A20R:A: outward } 0 17 {A20R:A -> A12R:A: outward } 0 18 {A19R:G -> A20R:A: adjacent_5p } 0 19 {A20R:A -> A19R:G: adjacent_3p } 0 20 {A20R:A -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 A20R:A 0 1 A21R:A 0 2 A22R:C 0 3 A8R:C 0 4 A9R:A 0 5 A10R:G 0 6 A11R:U 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p inward } 0 1 {A9R:A -> A8R:C: adjacent_3p inward } 0 2 {A8R:C -> A22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {A22R:C -> A8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {A9R:A -> A10R:G: adjacent_5p } 0 5 {A10R:G -> A9R:A: adjacent_3p } 0 6 {A9R:A -> A11R:U: outward } 0 7 {A11R:U -> A9R:A: outward } 0 8 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 9 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 10 {A10R:G -> A11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A11R:U -> A10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A20R:A -> A21R:A: adjacent_5p upward } 0 15 {A21R:A -> A20R:A: adjacent_3p downward } 0 16 {A21R:A -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 B19R:G 0 1 B20R:A 0 2 B21R:A 0 3 B9R:A 0 4 B10R:G 0 5 B11R:U 0 6 B12R:A 0 [Edges] 0 {B9R:A -> B10R:G: adjacent_5p } 0 1 {B10R:G -> B9R:A: adjacent_3p } 0 2 {B9R:A -> B11R:U: outward } 0 3 {B11R:U -> B9R:A: outward } 0 4 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 5 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 6 {B10R:G -> B11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {B11R:U -> B10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {B10R:G -> B19R:G: inward } 0 9 {B19R:G -> B10R:G: inward } 0 10 {B11R:U -> B12R:A: adjacent_5p } 0 11 {B12R:A -> B11R:U: adjacent_3p } 0 12 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {B12R:A -> B19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {B19R:G -> B12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {B12R:A -> B20R:A: outward } 0 17 {B20R:A -> B12R:A: outward } 0 18 {B19R:G -> B20R:A: adjacent_5p } 0 19 {B20R:A -> B19R:G: adjacent_3p } 0 20 {B20R:A -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 B20R:A 0 1 B21R:A 0 2 B22R:C 0 3 B8R:C 0 4 B9R:A 0 5 B10R:G 0 6 B11R:U 0 [Edges] 0 {B8R:C -> B9R:A: adjacent_5p inward } 0 1 {B9R:A -> B8R:C: adjacent_3p inward } 0 2 {B8R:C -> B22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {B22R:C -> B8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {B9R:A -> B10R:G: adjacent_5p } 0 5 {B10R:G -> B9R:A: adjacent_3p } 0 6 {B9R:A -> B11R:U: outward } 0 7 {B11R:U -> B9R:A: outward } 0 8 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 9 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 10 {B10R:G -> B11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {B11R:U -> B10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {B20R:A -> B21R:A: adjacent_5p upward } 0 15 {B21R:A -> B20R:A: adjacent_3p downward } 0 16 {B21R:A -> B22R:C: adjacent_5p upward } 0 17 {B22R:C -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 C19R:G 0 1 C20R:A 0 2 C21R:A 0 3 C9R:A 0 4 C10R:G 0 5 C11R:U 0 6 C12R:A 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 5 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C10R:G -> C19R:G: inward } 0 9 {C19R:G -> C10R:G: inward } 0 10 {C11R:U -> C12R:A: adjacent_5p } 0 11 {C12R:A -> C11R:U: adjacent_3p } 0 12 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {C12R:A -> C19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {C19R:G -> C12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {C12R:A -> C20R:A: outward } 0 17 {C20R:A -> C12R:A: outward } 0 18 {C19R:G -> C20R:A: adjacent_5p } 0 19 {C20R:A -> C19R:G: adjacent_3p } 0 20 {C20R:A -> C21R:A: adjacent_5p upward } 0 21 {C21R:A -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:A 0 2 C22R:C 0 3 C8R:C 0 4 C9R:A 0 5 C10R:G 0 6 C11R:U 0 [Edges] 0 {C8R:C -> C9R:A: adjacent_5p inward } 0 1 {C9R:A -> C8R:C: adjacent_3p inward } 0 2 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {C9R:A -> C10R:G: adjacent_5p } 0 5 {C10R:G -> C9R:A: adjacent_3p } 0 6 {C9R:A -> C11R:U: outward } 0 7 {C11R:U -> C9R:A: outward } 0 8 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 9 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 10 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {C20R:A -> C21R:A: adjacent_5p upward } 0 15 {C21R:A -> C20R:A: adjacent_3p downward } 0 16 {C21R:A -> C22R:C: adjacent_5p upward } 0 17 {C22R:C -> C21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:A 0 2 A21R:A 0 3 A9R:A 0 4 A10R:G 0 5 A11R:U 0 6 A12R:A 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A11R:U: outward } 0 3 {A11R:U -> A9R:A: outward } 0 4 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 5 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 6 {A10R:G -> A11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A11R:U -> A10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A10R:G -> A19R:G: inward } 0 9 {A19R:G -> A10R:G: inward } 0 10 {A11R:U -> A12R:A: adjacent_5p } 0 11 {A12R:A -> A11R:U: adjacent_3p } 0 12 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {A12R:A -> A19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {A19R:G -> A12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A12R:A -> A20R:A: outward } 0 17 {A20R:A -> A12R:A: outward } 0 18 {A19R:G -> A20R:A: adjacent_5p } 0 19 {A20R:A -> A19R:G: adjacent_3p } 0 20 {A20R:A -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 B19R:G 0 1 B20R:A 0 2 B21R:A 0 3 B9R:A 0 4 B10R:G 0 5 B11R:U 0 6 B12R:A 0 [Edges] 0 {B9R:A -> B10R:G: adjacent_5p } 0 1 {B10R:G -> B9R:A: adjacent_3p } 0 2 {B9R:A -> B11R:U: outward } 0 3 {B11R:U -> B9R:A: outward } 0 4 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 5 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 6 {B10R:G -> B11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {B11R:U -> B10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {B10R:G -> B19R:G: inward } 0 9 {B19R:G -> B10R:G: inward } 0 10 {B11R:U -> B12R:A: adjacent_5p } 0 11 {B12R:A -> B11R:U: adjacent_3p } 0 12 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {B12R:A -> B19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {B19R:G -> B12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {B12R:A -> B20R:A: outward } 0 17 {B20R:A -> B12R:A: outward } 0 18 {B19R:G -> B20R:A: adjacent_5p } 0 19 {B20R:A -> B19R:G: adjacent_3p } 0 20 {B20R:A -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 B20R:A 0 1 B21R:A 0 2 B22R:C 0 3 B8R:C 0 4 B9R:A 0 5 B10R:G 0 6 B11R:U 0 [Edges] 0 {B8R:C -> B9R:A: adjacent_5p inward } 0 1 {B9R:A -> B8R:C: adjacent_3p inward } 0 2 {B8R:C -> B22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {B22R:C -> B8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {B9R:A -> B10R:G: adjacent_5p } 0 5 {B10R:G -> B9R:A: adjacent_3p } 0 6 {B9R:A -> B11R:U: outward } 0 7 {B11R:U -> B9R:A: outward } 0 8 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 9 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 10 {B10R:G -> B11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {B11R:U -> B10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {B20R:A -> B21R:A: adjacent_5p upward } 0 15 {B21R:A -> B20R:A: adjacent_3p downward } 0 16 {B21R:A -> B22R:C: adjacent_5p upward } 0 17 {B22R:C -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 C19R:G 0 1 C20R:A 0 2 C21R:A 0 3 C9R:A 0 4 C10R:G 0 5 C11R:U 0 6 C12R:A 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 5 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C10R:G -> C19R:G: inward } 0 9 {C19R:G -> C10R:G: inward } 0 10 {C11R:U -> C12R:A: adjacent_5p } 0 11 {C12R:A -> C11R:U: adjacent_3p } 0 12 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {C12R:A -> C19R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {C19R:G -> C12R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {C12R:A -> C20R:A: outward } 0 17 {C20R:A -> C12R:A: outward } 0 18 {C19R:G -> C20R:A: adjacent_5p } 0 19 {C20R:A -> C19R:G: adjacent_3p } 0 20 {C20R:A -> C21R:A: adjacent_5p upward } 0 21 {C21R:A -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:A 0 2 C22R:C 0 3 C8R:C 0 4 C9R:A 0 5 C10R:G 0 6 C11R:U 0 [Edges] 0 {C8R:C -> C9R:A: adjacent_5p inward } 0 1 {C9R:A -> C8R:C: adjacent_3p inward } 0 2 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 3 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 4 {C9R:A -> C10R:G: adjacent_5p } 0 5 {C10R:G -> C9R:A: adjacent_3p } 0 6 {C9R:A -> C11R:U: outward } 0 7 {C11R:U -> C9R:A: outward } 0 8 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 9 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 10 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {C20R:A -> C21R:A: adjacent_5p upward } 0 15 {C21R:A -> C20R:A: adjacent_3p downward } 0 16 {C21R:A -> C22R:C: adjacent_5p upward } 0 17 {C22R:C -> C21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A21R:A 0 1 A22R:C 0 2 A23R:G 0 3 A3R:C 0 4 A4R:A 0 5 A5R:G 0 6 A6R:U 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:A: adjacent_3p } 0 6 {A5R:G -> A6R:U: adjacent_5p upward } 0 7 {A6R:U -> A5R:G: adjacent_3p downward } 0 8 {A5R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A22R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A6R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A21R:A -> A22R:C: adjacent_5p upward } 0 13 {A22R:C -> A21R:A: adjacent_3p downward } 0 14 {A22R:C -> A23R:G: adjacent_5p } 0 15 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 T31R:C 0 1 T32R:C 0 2 T33R:U 0 3 T36R:U 0 4 T37R:A 0 5 T38R:A 0 6 T39R:G 0 [Edges] 0 {T31R:C -> T32R:C: adjacent_5p upward } 0 1 {T32R:C -> T31R:C: adjacent_3p downward } 0 2 {T31R:C -> T39R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T39R:G -> T31R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T32R:C -> T33R:U: adjacent_5p upward } 0 5 {T33R:U -> T32R:C: adjacent_3p downward } 0 6 {T32R:C -> T38R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 7 {T38R:A -> T32R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 8 {T33R:U -> T36R:U: pairing parallel trans one_hbond Ss/Ww } 0 9 {T36R:U -> T33R:U: pairing parallel trans one_hbond Ww/Ss } 0 10 {T36R:U -> T37R:A: adjacent_5p } 0 11 {T37R:A -> T36R:U: adjacent_3p } 0 12 {T36R:U -> T38R:A: outward } 0 13 {T38R:A -> T36R:U: outward } 0 14 {T37R:A -> T38R:A: adjacent_5p } 0 15 {T38R:A -> T37R:A: adjacent_3p } 0 16 {T38R:A -> T39R:G: adjacent_5p upward } 0 17 {T39R:G -> T38R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:A 0 2 A9R:A 0 3 A17R:A 0 4 A18R:G 0 5 A19R:U 0 6 A20R:A 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p } 0 1 {A8R:A -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A20R:A -> A7R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A8R:A -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A19R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {A19R:U -> A8R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A9R:A -> A17R:A: pairing parallel trans 35 Hh/Hh } 0 9 {A17R:A -> A9R:A: pairing parallel trans 35 Hh/Hh } 0 10 {A17R:A -> A18R:G: adjacent_5p } 0 11 {A18R:G -> A17R:A: adjacent_3p } 0 12 {A17R:A -> A19R:U: outward } 0 13 {A19R:U -> A17R:A: outward } 0 14 {A18R:G -> A19R:U: adjacent_5p pairing parallel cis 89 Ss/Hh } 0 15 {A19R:U -> A18R:G: adjacent_3p pairing parallel cis 89 Hh/Ss } 0 16 {A19R:U -> A20R:A: adjacent_5p } 0 17 {A20R:A -> A19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:A 0 3 A26R:G 0 4 A27R:U 0 5 A28R:A 0 6 A29R:C 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:A: adjacent_5p } 0 5 {A8R:A -> A7R:U: adjacent_3p } 0 6 {A7R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:A -> A26R:G: pairing parallel trans one_hbond Hh/C8 } 0 9 {A26R:G -> A8R:A: pairing parallel trans one_hbond C8/Hh } 0 10 {A8R:A -> A27R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A27R:U -> A8R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A8R:A -> A28R:A: outward } 0 13 {A28R:A -> A8R:A: outward } 0 14 {A26R:G -> A27R:U: adjacent_5p } 0 15 {A27R:U -> A26R:G: adjacent_3p } 0 16 {A27R:U -> A28R:A: adjacent_5p } 0 17 {A28R:A -> A27R:U: adjacent_3p } 0 18 {A28R:A -> A29R:C: adjacent_5p upward } 0 19 {A29R:C -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 12 . 3 . . 9 . 14 . . 4 . . 11 15 . 16 . 5 . 7 13 . 17 . 18 6 3 . . . . 19 . [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:U 0 2 A10R:G 0 3 A23R:C 0 4 A24R:A 0 5 A25R:C 0 6 A26R:G 0 [Edges] 0 {A8R:A -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A26R:G: pairing parallel trans one_hbond Hh/C8 } 0 3 {A26R:G -> A8R:A: pairing parallel trans one_hbond C8/Hh } 0 4 {A9R:U -> A10R:G: adjacent_5p } 0 5 {A10R:G -> A9R:U: adjacent_3p } 0 6 {A10R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A23R:C -> A24R:A: adjacent_5p } 0 9 {A24R:A -> A23R:C: adjacent_3p } 0 10 {A24R:A -> A25R:C: adjacent_5p upward } 0 11 {A25R:C -> A24R:A: adjacent_3p downward } 0 12 {A25R:C -> A26R:G: adjacent_5p } 0 13 {A26R:G -> A25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B5R:G 0 1 B6R:C 0 2 B7R:C 0 3 B14R:G 0 4 B15R:U 0 5 B16R:G 0 6 B17R:C 0 [Edges] 0 {B5R:G -> B6R:C: adjacent_5p upward } 0 1 {B6R:C -> B5R:G: adjacent_3p downward } 0 2 {B5R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:C -> B7R:C: adjacent_5p upward } 0 5 {B7R:C -> B6R:C: adjacent_3p downward } 0 6 {B6R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B14R:G -> B15R:U: adjacent_5p } 0 11 {B15R:U -> B14R:G: adjacent_3p } 0 12 {B15R:U -> B16R:G: adjacent_5p } 0 13 {B16R:G -> B15R:U: adjacent_3p } 0 14 {B16R:G -> B17R:C: adjacent_5p } 0 15 {B17R:C -> B16R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A15R:C 0 1 A16R:U 0 2 A17R:G 0 3 A34R:C 0 4 A35R:A 0 5 A36R:A 0 6 A37R:G 0 [Edges] 0 {A15R:C -> A16R:U: adjacent_5p } 0 1 {A16R:U -> A15R:C: adjacent_3p } 0 2 {A15R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A37R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:G: adjacent_5p upward } 0 5 {A17R:G -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A36R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A16R:U -> A37R:G: outward } 0 9 {A37R:G -> A16R:U: outward } 0 10 {A17R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A34R:C -> A35R:A: adjacent_5p upward } 0 13 {A35R:A -> A34R:C: adjacent_3p downward } 0 14 {A35R:A -> A36R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {A36R:A -> A35R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 16 {A36R:A -> A37R:G: adjacent_5p upward } 0 17 {A37R:G -> A36R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 A16R:U 0 1 A17R:G 0 2 A18R:C 0 3 A33R:G 0 4 A34R:C 0 5 A35R:A 0 6 A36R:A 0 [Edges] 0 {A16R:U -> A17R:G: adjacent_5p upward } 0 1 {A17R:G -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A36R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A17R:G -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:G: adjacent_3p downward } 0 6 {A17R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A34R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A33R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A33R:G -> A34R:C: adjacent_5p upward } 0 11 {A34R:C -> A33R:G: adjacent_3p downward } 0 12 {A34R:C -> A35R:A: adjacent_5p upward } 0 13 {A35R:A -> A34R:C: adjacent_3p downward } 0 14 {A35R:A -> A36R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {A36R:A -> A35R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A38R:U 0 1 A39R:C 0 2 A40R:C 0 3 A9R:G 0 4 A10R:C 0 5 A11R:G 0 6 A12R:A 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p } 0 1 {A10R:C -> A9R:G: adjacent_3p } 0 2 {A9R:G -> A11R:G: upward } 0 3 {A11R:G -> A9R:G: downward } 0 4 {A9R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A40R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A10R:C -> A11R:G: adjacent_5p } 0 7 {A11R:G -> A10R:C: adjacent_3p } 0 8 {A11R:G -> A12R:A: adjacent_5p upward } 0 9 {A12R:A -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A39R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A38R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A38R:U -> A39R:C: adjacent_5p upward } 0 15 {A39R:C -> A38R:U: adjacent_3p downward } 0 16 {A39R:C -> A40R:C: adjacent_5p } 0 17 {A40R:C -> A39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A39R:C 0 1 A40R:C 0 2 A41R:C 0 3 A8R:G 0 4 A9R:G 0 5 A10R:C 0 6 A11R:G 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:C: adjacent_5p } 0 5 {A10R:C -> A9R:G: adjacent_3p } 0 6 {A9R:G -> A11R:G: upward } 0 7 {A11R:G -> A9R:G: downward } 0 8 {A9R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A40R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A10R:C -> A11R:G: adjacent_5p } 0 11 {A11R:G -> A10R:C: adjacent_3p } 0 12 {A11R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A39R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A39R:C -> A40R:C: adjacent_5p } 0 15 {A40R:C -> A39R:C: adjacent_3p } 0 16 {A40R:C -> A41R:C: adjacent_5p upward } 0 17 {A41R:C -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 A40R:C 0 1 A41R:C 0 2 A42R:U 0 3 A6R:A 0 4 A7R:U 0 5 A8R:G 0 6 A9R:G 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:A: adjacent_3p } 0 2 {A6R:A -> A8R:G: upward } 0 3 {A8R:G -> A6R:A: downward } 0 4 {A6R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A42R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A7R:U -> A8R:G: adjacent_5p } 0 7 {A8R:G -> A7R:U: adjacent_3p } 0 8 {A8R:G -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A41R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A40R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A40R:C -> A41R:C: adjacent_5p upward } 0 15 {A41R:C -> A40R:C: adjacent_3p downward } 0 16 {A41R:C -> A42R:U: adjacent_5p } 0 17 {A42R:U -> A41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A41R:C 0 1 A42R:U 0 2 A43R:C 0 3 A5R:G 0 4 A6R:A 0 5 A7R:U 0 6 A8R:G 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:A: adjacent_3p } 0 6 {A6R:A -> A8R:G: upward } 0 7 {A8R:G -> A6R:A: downward } 0 8 {A6R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A42R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A6R:A -> A43R:C: outward } 0 11 {A43R:C -> A6R:A: outward } 0 12 {A7R:U -> A8R:G: adjacent_5p } 0 13 {A8R:G -> A7R:U: adjacent_3p } 0 14 {A8R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A41R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A41R:C -> A42R:U: adjacent_5p } 0 17 {A42R:U -> A41R:C: adjacent_3p } 0 18 {A42R:U -> A43R:C: adjacent_5p } 0 19 {A43R:C -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 18 . 9 . . 2 . 19 . 3 11 . . 3 . . 2 . 0 . . 4 . 8 10 1 . 4 6 5 . . . . 5 . 12 6 14 . . . 7 13 . [GraphModel] [Vertices] 0 B15R:C 0 1 B16R:U 0 2 B17R:G 0 3 B34R:C 0 4 B35R:A 0 5 B36R:A 0 6 B37R:G 0 [Edges] 0 {B15R:C -> B16R:U: adjacent_5p } 0 1 {B16R:U -> B15R:C: adjacent_3p } 0 2 {B15R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B37R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B16R:U -> B17R:G: adjacent_5p upward } 0 5 {B17R:G -> B16R:U: adjacent_3p downward } 0 6 {B16R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B36R:A -> B16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B16R:U -> B37R:G: outward } 0 9 {B37R:G -> B16R:U: outward } 0 10 {B17R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B34R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B34R:C -> B35R:A: adjacent_5p upward } 0 13 {B35R:A -> B34R:C: adjacent_3p downward } 0 14 {B35R:A -> B36R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {B36R:A -> B35R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 16 {B36R:A -> B37R:G: adjacent_5p upward } 0 17 {B37R:G -> B36R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 B16R:U 0 1 B17R:G 0 2 B18R:C 0 3 B33R:G 0 4 B34R:C 0 5 B35R:A 0 6 B36R:A 0 [Edges] 0 {B16R:U -> B17R:G: adjacent_5p upward } 0 1 {B17R:G -> B16R:U: adjacent_3p downward } 0 2 {B16R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B36R:A -> B16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B17R:G -> B18R:C: adjacent_5p upward } 0 5 {B18R:C -> B17R:G: adjacent_3p downward } 0 6 {B17R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B34R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B18R:C -> B33R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B33R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B33R:G -> B34R:C: adjacent_5p upward } 0 11 {B34R:C -> B33R:G: adjacent_3p downward } 0 12 {B34R:C -> B35R:A: adjacent_5p upward } 0 13 {B35R:A -> B34R:C: adjacent_3p downward } 0 14 {B35R:A -> B36R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {B36R:A -> B35R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 B38R:U 0 1 B39R:C 0 2 B40R:C 0 3 B9R:G 0 4 B10R:C 0 5 B11R:G 0 6 B12R:A 0 [Edges] 0 {B9R:G -> B10R:C: adjacent_5p } 0 1 {B10R:C -> B9R:G: adjacent_3p } 0 2 {B9R:G -> B11R:G: upward } 0 3 {B11R:G -> B9R:G: downward } 0 4 {B9R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {B40R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {B10R:C -> B11R:G: adjacent_5p } 0 7 {B11R:G -> B10R:C: adjacent_3p } 0 8 {B11R:G -> B12R:A: adjacent_5p upward } 0 9 {B12R:A -> B11R:G: adjacent_3p downward } 0 10 {B11R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B39R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B12R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B38R:U -> B12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B38R:U -> B39R:C: adjacent_5p upward } 0 15 {B39R:C -> B38R:U: adjacent_3p downward } 0 16 {B39R:C -> B40R:C: adjacent_5p upward } 0 17 {B40R:C -> B39R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 B39R:C 0 1 B40R:C 0 2 B41R:C 0 3 B8R:G 0 4 B9R:G 0 5 B10R:C 0 6 B11R:G 0 [Edges] 0 {B8R:G -> B9R:G: adjacent_5p upward } 0 1 {B9R:G -> B8R:G: adjacent_3p downward } 0 2 {B8R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B41R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B9R:G -> B10R:C: adjacent_5p } 0 5 {B10R:C -> B9R:G: adjacent_3p } 0 6 {B9R:G -> B11R:G: upward } 0 7 {B11R:G -> B9R:G: downward } 0 8 {B9R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B40R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B10R:C -> B11R:G: adjacent_5p } 0 11 {B11R:G -> B10R:C: adjacent_3p } 0 12 {B11R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B39R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B39R:C -> B40R:C: adjacent_5p upward } 0 15 {B40R:C -> B39R:C: adjacent_3p downward } 0 16 {B40R:C -> B41R:C: adjacent_5p upward } 0 17 {B41R:C -> B40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 B40R:C 0 1 B41R:C 0 2 B42R:U 0 3 B6R:A 0 4 B7R:U 0 5 B8R:G 0 6 B9R:G 0 [Edges] 0 {B6R:A -> B7R:U: adjacent_5p } 0 1 {B7R:U -> B6R:A: adjacent_3p } 0 2 {B6R:A -> B8R:G: upward } 0 3 {B8R:G -> B6R:A: downward } 0 4 {B6R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B42R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {B7R:U -> B8R:G: adjacent_5p } 0 7 {B8R:G -> B7R:U: adjacent_3p } 0 8 {B8R:G -> B9R:G: adjacent_5p upward } 0 9 {B9R:G -> B8R:G: adjacent_3p downward } 0 10 {B8R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B41R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B9R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B40R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B40R:C -> B41R:C: adjacent_5p upward } 0 15 {B41R:C -> B40R:C: adjacent_3p downward } 0 16 {B41R:C -> B42R:U: adjacent_5p } 0 17 {B42R:U -> B41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 B41R:C 0 1 B42R:U 0 2 B43R:C 0 3 B5R:G 0 4 B6R:A 0 5 B7R:U 0 6 B8R:G 0 [Edges] 0 {B5R:G -> B6R:A: adjacent_5p upward } 0 1 {B6R:A -> B5R:G: adjacent_3p downward } 0 2 {B5R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:A -> B7R:U: adjacent_5p } 0 5 {B7R:U -> B6R:A: adjacent_3p } 0 6 {B6R:A -> B8R:G: upward } 0 7 {B8R:G -> B6R:A: downward } 0 8 {B6R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B42R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B7R:U -> B8R:G: adjacent_5p } 0 11 {B8R:G -> B7R:U: adjacent_3p } 0 12 {B8R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B41R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B41R:C -> B42R:U: adjacent_5p } 0 15 {B42R:U -> B41R:C: adjacent_3p } 0 16 {B42R:U -> B43R:C: adjacent_5p upward } 0 17 {B43R:C -> B42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A922R:U 0 1 A923R:C 0 2 A924R:C 0 3 A912R:G 0 4 A913R:U 0 5 A914R:G 0 6 A915R:G 0 [Edges] 0 {A912R:G -> A913R:U: adjacent_5p } 0 1 {A913R:U -> A912R:G: adjacent_3p } 0 2 {A912R:G -> A924R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A924R:C -> A912R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A913R:U -> A914R:G: adjacent_5p upward } 0 5 {A914R:G -> A913R:U: adjacent_3p downward } 0 6 {A914R:G -> A915R:G: adjacent_5p upward } 0 7 {A915R:G -> A914R:G: adjacent_3p downward } 0 8 {A914R:G -> A923R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A923R:C -> A914R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A915R:G -> A922R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A922R:U -> A915R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A922R:U -> A923R:C: adjacent_5p upward } 0 13 {A923R:C -> A922R:U: adjacent_3p downward } 0 14 {A923R:C -> A924R:C: adjacent_5p upward } 0 15 {A924R:C -> A923R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 A923R:C 0 1 A924R:C 0 2 A925R:U 0 3 A911R:A 0 4 A912R:G 0 5 A913R:U 0 6 A914R:G 0 [Edges] 0 {A911R:A -> A912R:G: adjacent_5p upward } 0 1 {A912R:G -> A911R:A: adjacent_3p downward } 0 2 {A911R:A -> A925R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A925R:U -> A911R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A912R:G -> A913R:U: adjacent_5p } 0 5 {A913R:U -> A912R:G: adjacent_3p } 0 6 {A912R:G -> A924R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A924R:C -> A912R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A913R:U -> A914R:G: adjacent_5p upward } 0 9 {A914R:G -> A913R:U: adjacent_3p downward } 0 10 {A914R:G -> A923R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A923R:C -> A914R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A923R:C -> A924R:C: adjacent_5p upward } 0 13 {A924R:C -> A923R:C: adjacent_3p downward } 0 14 {A924R:C -> A925R:U: adjacent_5p upward } 0 15 {A925R:U -> A924R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . 7 . . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 11R:C 0 1 12R:C 0 2 13R:C 0 3 20R:G 0 4 21R:A 0 5 22R:G 0 6 23R:G 0 [Edges] 0 {11R:C -> 12R:C: adjacent_5p } 0 1 {12R:C -> 11R:C: adjacent_3p } 0 2 {11R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {23R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {12R:C -> 13R:C: adjacent_5p upward } 0 5 {13R:C -> 12R:C: adjacent_3p downward } 0 6 {12R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {22R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {13R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {20R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {20R:G -> 21R:A: adjacent_5p } 0 11 {21R:A -> 20R:G: adjacent_3p } 0 12 {21R:A -> 22R:G: adjacent_5p } 0 13 {22R:G -> 21R:A: adjacent_3p } 0 14 {22R:G -> 23R:G: adjacent_5p upward } 0 15 {23R:G -> 22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 12R:C 0 1 13R:C 0 2 14R:A 0 3 19R:U 0 4 20R:G 0 5 21R:A 0 6 22R:G 0 [Edges] 0 {12R:C -> 13R:C: adjacent_5p upward } 0 1 {13R:C -> 12R:C: adjacent_3p downward } 0 2 {12R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {13R:C -> 14R:A: adjacent_5p upward } 0 5 {14R:A -> 13R:C: adjacent_3p downward } 0 6 {13R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {20R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {14R:A -> 19R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {19R:U -> 14R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {14R:A -> 20R:G: outward } 0 11 {20R:G -> 14R:A: outward } 0 12 {19R:U -> 20R:G: adjacent_5p } 0 13 {20R:G -> 19R:U: adjacent_3p } 0 14 {20R:G -> 21R:A: adjacent_5p } 0 15 {21R:A -> 20R:G: adjacent_3p } 0 16 {21R:A -> 22R:G: adjacent_5p } 0 17 {22R:G -> 21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:C 0 2 A6R:C 0 3 A18R:A 0 4 A19R:U 0 5 A20R:G 0 6 A21R:A 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p } 0 1 {A5R:C -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A18R:A: pairing antiparallel cis 78 Ww/Bh } 0 9 {A18R:A -> A6R:C: pairing antiparallel cis 78 Bh/Ww } 0 10 {A18R:A -> A19R:U: adjacent_5p } 0 11 {A19R:U -> A18R:A: adjacent_3p } 0 12 {A18R:A -> A20R:G: upward } 0 13 {A20R:G -> A18R:A: downward } 0 14 {A19R:U -> A20R:G: adjacent_5p } 0 15 {A20R:G -> A19R:U: adjacent_3p } 0 16 {A20R:G -> A21R:A: adjacent_5p upward } 0 17 {A21R:A -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:C 0 3 A17R:G 0 4 A18R:A 0 5 A19R:U 0 6 A20R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A18R:A: pairing antiparallel cis 78 Ww/Bh } 0 7 {A18R:A -> A6R:C: pairing antiparallel cis 78 Bh/Ww } 0 8 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A17R:G -> A18R:A: adjacent_5p } 0 11 {A18R:A -> A17R:G: adjacent_3p } 0 12 {A18R:A -> A19R:U: adjacent_5p } 0 13 {A19R:U -> A18R:A: adjacent_3p } 0 14 {A18R:A -> A20R:G: upward } 0 15 {A20R:G -> A18R:A: downward } 0 16 {A19R:U -> A20R:G: adjacent_5p } 0 17 {A20R:G -> A19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . MOLECULE: [GraphModel] [Vertices] 0 C16R:C 0 1 C17R:A 0 2 C18R:C 0 3 A7R:G 0 4 A8R:A 0 5 A9R:A 0 6 A10R:G 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p } 0 1 {A8R:A -> A7R:G: adjacent_3p } 0 2 {A7R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:A: adjacent_3p downward } 0 6 {A9R:A -> A10R:G: adjacent_5p } 0 7 {A10R:G -> A9R:A: adjacent_3p } 0 8 {A10R:G -> C16R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C16R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A10R:G -> C17R:A: outward } 0 11 {C17R:A -> A10R:G: outward } 0 12 {C16R:C -> C17R:A: adjacent_5p upward } 0 13 {C17R:A -> C16R:C: adjacent_3p downward } 0 14 {C17R:A -> C18R:C: adjacent_5p upward } 0 15 {C18R:C -> C17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 9 1 13 . 14 . . . 11 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 10 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 17R:U 0 1 18R:A 0 2 19R:U 0 3 5R:U 0 4 6R:A 0 5 7R:A 0 6 8R:G 0 [Edges] 0 {5R:U -> 6R:A: adjacent_5p upward } 0 1 {6R:A -> 5R:U: adjacent_3p downward } 0 2 {5R:U -> 19R:U: pairing antiparallel trans one_hbond 81 Ww/Hw } 0 3 {19R:U -> 5R:U: pairing antiparallel trans one_hbond 81 Hw/Ww } 0 4 {6R:A -> 7R:A: adjacent_5p } 0 5 {7R:A -> 6R:A: adjacent_3p } 0 6 {6R:A -> 18R:A: inward } 0 7 {18R:A -> 6R:A: inward } 0 8 {7R:A -> 8R:G: adjacent_5p upward } 0 9 {8R:G -> 7R:A: adjacent_3p downward } 0 10 {7R:A -> 18R:A: outward } 0 11 {18R:A -> 7R:A: outward } 0 12 {8R:G -> 17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {17R:U -> 8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {17R:U -> 18R:A: adjacent_5p } 0 15 {18R:A -> 17R:U: adjacent_3p } 0 16 {18R:A -> 19R:U: adjacent_5p } 0 17 {19R:U -> 18R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 11 . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 7R:A 0 1 8R:G 0 2 9R:G 0 3 18R:C 0 4 19R:A 0 5 20R:C 0 6 21R:U 0 [Edges] 0 {7R:A -> 8R:G: adjacent_5p } 0 1 {8R:G -> 7R:A: adjacent_3p } 0 2 {7R:A -> 21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {21R:U -> 7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {8R:G -> 9R:G: adjacent_5p } 0 5 {9R:G -> 8R:G: adjacent_3p } 0 6 {8R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {20R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {9R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {18R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {18R:C -> 19R:A: adjacent_5p } 0 11 {19R:A -> 18R:C: adjacent_3p } 0 12 {19R:A -> 20R:C: adjacent_5p downward } 0 13 {20R:C -> 19R:A: adjacent_3p upward } 0 14 {20R:C -> 21R:U: adjacent_5p } 0 15 {21R:U -> 20R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 8R:G 0 1 9R:G 0 2 10R:U 0 3 17R:A 0 4 18R:C 0 5 19R:A 0 6 20R:C 0 [Edges] 0 {8R:G -> 9R:G: adjacent_5p } 0 1 {9R:G -> 8R:G: adjacent_3p } 0 2 {8R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:G -> 10R:U: adjacent_5p upward } 0 5 {10R:U -> 9R:G: adjacent_3p downward } 0 6 {9R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {18R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {10R:U -> 17R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {17R:A -> 10R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {17R:A -> 18R:C: adjacent_5p upward } 0 11 {18R:C -> 17R:A: adjacent_3p downward } 0 12 {18R:C -> 19R:A: adjacent_5p } 0 13 {19R:A -> 18R:C: adjacent_3p } 0 14 {19R:A -> 20R:C: adjacent_5p downward } 0 15 {20R:C -> 19R:A: adjacent_3p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A16R:C 0 1 A18R:G 0 2 A19R:G 0 3 A56R:C 0 4 A57R:G 0 5 A58R:A 0 6 A59R:C 0 [Edges] 0 {A16R:C -> A18R:G: adjacent_5p } 0 1 {A18R:G -> A16R:C: adjacent_3p } 0 2 {A16R:C -> A59R:C: pairing parallel trans XV Ww/Ww } 0 3 {A59R:C -> A16R:C: pairing parallel trans XV Ww/Ww } 0 4 {A18R:G -> A19R:G: adjacent_5p } 0 5 {A19R:G -> A18R:G: adjacent_3p } 0 6 {A18R:G -> A57R:G: inward } 0 7 {A57R:G -> A18R:G: inward } 0 8 {A18R:G -> A58R:A: outward } 0 9 {A58R:A -> A18R:G: outward } 0 10 {A19R:G -> A56R:C: pairing antiparallel cis one_hbond Bs/Ww } 0 11 {A56R:C -> A19R:G: pairing antiparallel cis one_hbond Ww/Bs } 0 12 {A19R:G -> A57R:G: outward } 0 13 {A57R:G -> A19R:G: outward } 0 14 {A56R:C -> A57R:G: adjacent_5p upward } 0 15 {A57R:G -> A56R:C: adjacent_3p downward } 0 16 {A57R:G -> A58R:A: adjacent_5p } 0 17 {A58R:A -> A57R:G: adjacent_3p } 0 18 {A58R:A -> A59R:C: adjacent_5p } 0 19 {A59R:C -> A58R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 12 . . 3 . . 11 . 14 . . 4 . 7 13 15 . 16 . 5 . 9 . . 17 . 18 6 3 . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B333R:A 0 1 B334R:G 0 2 B335R:U 0 3 B325R:A 0 4 B326R:A 0 5 B327R:C 0 6 B328R:U 0 [Edges] 0 {B325R:A -> B326R:A: adjacent_5p upward } 0 1 {B326R:A -> B325R:A: adjacent_3p downward } 0 2 {B325R:A -> B335R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B335R:U -> B325R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B326R:A -> B327R:C: adjacent_5p upward } 0 5 {B327R:C -> B326R:A: adjacent_3p downward } 0 6 {B326R:A -> B335R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B335R:U -> B326R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B327R:C -> B328R:U: adjacent_5p } 0 9 {B328R:U -> B327R:C: adjacent_3p } 0 10 {B327R:C -> B334R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B334R:G -> B327R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B328R:U -> B333R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B333R:A -> B328R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B333R:A -> B334R:G: adjacent_5p upward } 0 15 {B334R:G -> B333R:A: adjacent_3p downward } 0 16 {B334R:G -> B335R:U: adjacent_5p upward } 0 17 {B335R:U -> B334R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 3 7 . . 3 . . 2 . 0 . . 4 . . 6 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 B344R:C 0 1 B345R:C 0 2 B346R:C 0 3 B318R:G 0 4 B319R:U 0 5 B320R:G 0 6 B321R:G 0 [Edges] 0 {B318R:G -> B319R:U: adjacent_5p } 0 1 {B319R:U -> B318R:G: adjacent_3p } 0 2 {B318R:G -> B346R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B346R:C -> B318R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B319R:U -> B320R:G: adjacent_5p } 0 5 {B320R:G -> B319R:U: adjacent_3p } 0 6 {B320R:G -> B321R:G: adjacent_5p upward } 0 7 {B321R:G -> B320R:G: adjacent_3p downward } 0 8 {B320R:G -> B345R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B345R:C -> B320R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B320R:G -> B346R:C: outward } 0 11 {B346R:C -> B320R:G: outward } 0 12 {B321R:G -> B344R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B344R:C -> B321R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B344R:C -> B345R:C: adjacent_5p upward } 0 15 {B345R:C -> B344R:C: adjacent_3p downward } 0 16 {B345R:C -> B346R:C: adjacent_5p } 0 17 {B346R:C -> B345R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 9 . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 10 . 5 . 6 6 12 . . . . 7 . [GraphModel] [Vertices] 0 B345R:C 0 1 B346R:C 0 2 B347R:G 0 3 B317R:C 0 4 B318R:G 0 5 B319R:U 0 6 B320R:G 0 [Edges] 0 {B317R:C -> B318R:G: adjacent_5p } 0 1 {B318R:G -> B317R:C: adjacent_3p } 0 2 {B317R:C -> B347R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B347R:G -> B317R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B318R:G -> B319R:U: adjacent_5p } 0 5 {B319R:U -> B318R:G: adjacent_3p } 0 6 {B318R:G -> B346R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B346R:C -> B318R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B319R:U -> B320R:G: adjacent_5p } 0 9 {B320R:G -> B319R:U: adjacent_3p } 0 10 {B320R:G -> B345R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B345R:C -> B320R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B320R:G -> B346R:C: outward } 0 13 {B346R:C -> B320R:G: outward } 0 14 {B345R:C -> B346R:C: adjacent_5p } 0 15 {B346R:C -> B345R:C: adjacent_3p } 0 16 {B346R:C -> B347R:G: adjacent_5p } 0 17 {B347R:G -> B346R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 16 . 7 . 13 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . . . 5 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A35R:A 0 1 A36R:U 0 2 A37R:G 0 3 A61R:C 0 4 A62R:G 0 5 A63R:U 0 6 A64R:A 0 [Edges] 0 {A35R:A -> A36R:U: adjacent_5p } 0 1 {A36R:U -> A35R:A: adjacent_3p } 0 2 {A35R:A -> A61R:C: downward } 0 3 {A61R:C -> A35R:A: upward } 0 4 {A35R:A -> A62R:G: upward } 0 5 {A62R:G -> A35R:A: downward } 0 6 {A35R:A -> A64R:A: pairing antiparallel trans V Hh/Ww } 0 7 {A64R:A -> A35R:A: pairing antiparallel trans V Ww/Hh } 0 8 {A36R:U -> A37R:G: adjacent_5p } 0 9 {A37R:G -> A36R:U: adjacent_3p } 0 10 {A37R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A61R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A61R:C -> A62R:G: adjacent_5p } 0 13 {A62R:G -> A61R:C: adjacent_3p } 0 14 {A62R:G -> A63R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 15 {A63R:U -> A62R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 16 {A63R:U -> A64R:A: adjacent_5p } 0 17 {A64R:A -> A63R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 4 . 6 1 1 . 8 . . . . 2 . 9 . 10 . . . 3 3 . 11 . 12 . . 4 5 . . 13 . 14 . 5 . . . . 15 . 16 6 7 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A95R:G 0 1 A96R:C 0 2 A97R:G 0 3 A106R:C 0 4 A107R:G 0 5 A108R:A 0 6 A109R:C 0 [Edges] 0 {A95R:G -> A96R:C: adjacent_5p upward } 0 1 {A96R:C -> A95R:G: adjacent_3p downward } 0 2 {A95R:G -> A109R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A109R:C -> A95R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A96R:C -> A97R:G: adjacent_5p } 0 5 {A97R:G -> A96R:C: adjacent_3p } 0 6 {A96R:C -> A107R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A107R:G -> A96R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A97R:G -> A106R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A106R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A97R:G -> A107R:G: outward } 0 11 {A107R:G -> A97R:G: outward } 0 12 {A106R:C -> A107R:G: adjacent_5p upward } 0 13 {A107R:G -> A106R:C: adjacent_3p downward } 0 14 {A107R:G -> A108R:A: adjacent_5p } 0 15 {A108R:A -> A107R:G: adjacent_3p } 0 16 {A107R:G -> A109R:C: upward } 0 17 {A109R:C -> A107R:G: downward } 0 18 {A108R:A -> A109R:C: adjacent_5p } 0 19 {A109R:C -> A108R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 16 5 . . . . 15 . 18 6 3 . . . 17 19 . [GraphModel] [Vertices] 0 A139R:C 0 1 A140R:G 0 2 A141R:G 0 3 A158R:U 0 4 A159R:G 0 5 A160R:C 0 6 A161R:G 0 [Edges] 0 {A139R:C -> A140R:G: adjacent_5p } 0 1 {A140R:G -> A139R:C: adjacent_3p } 0 2 {A139R:C -> A161R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A161R:G -> A139R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A140R:G -> A141R:G: adjacent_5p upward } 0 5 {A141R:G -> A140R:G: adjacent_3p downward } 0 6 {A140R:G -> A160R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A160R:C -> A140R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A140R:G -> A161R:G: outward } 0 9 {A161R:G -> A140R:G: outward } 0 10 {A141R:G -> A158R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 11 {A158R:U -> A141R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 12 {A158R:U -> A159R:G: adjacent_5p } 0 13 {A159R:G -> A158R:U: adjacent_3p } 0 14 {A159R:G -> A160R:C: adjacent_5p } 0 15 {A160R:C -> A159R:G: adjacent_3p } 0 16 {A160R:C -> A161R:G: adjacent_5p } 0 17 {A161R:G -> A160R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 A140R:G 0 1 A141R:G 0 2 A142R:C 0 3 A157R:G 0 4 A158R:U 0 5 A159R:G 0 6 A160R:C 0 [Edges] 0 {A140R:G -> A141R:G: adjacent_5p upward } 0 1 {A141R:G -> A140R:G: adjacent_3p downward } 0 2 {A140R:G -> A160R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A160R:C -> A140R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A141R:G -> A142R:C: adjacent_5p upward } 0 5 {A142R:C -> A141R:G: adjacent_3p downward } 0 6 {A141R:G -> A158R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 7 {A158R:U -> A141R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 8 {A142R:C -> A157R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A157R:G -> A142R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A157R:G -> A158R:U: adjacent_5p upward } 0 11 {A158R:U -> A157R:G: adjacent_3p downward } 0 12 {A158R:U -> A159R:G: adjacent_5p } 0 13 {A159R:G -> A158R:U: adjacent_3p } 0 14 {A159R:G -> A160R:C: adjacent_5p } 0 15 {A160R:C -> A159R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A180R:G 0 1 A181R:G 0 2 A182R:G 0 3 A187R:A 0 4 A188R:G 0 5 A189R:C 0 6 A190R:C 0 [Edges] 0 {A180R:G -> A181R:G: adjacent_5p upward } 0 1 {A181R:G -> A180R:G: adjacent_3p downward } 0 2 {A180R:G -> A190R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A190R:C -> A180R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A181R:G -> A182R:G: adjacent_5p upward } 0 5 {A182R:G -> A181R:G: adjacent_3p downward } 0 6 {A181R:G -> A189R:C: pairing antiparallel cis Ww/Ww } 0 7 {A189R:C -> A181R:G: pairing antiparallel cis Ww/Ww } 0 8 {A181R:G -> A190R:C: outward } 0 9 {A190R:C -> A181R:G: outward } 0 10 {A182R:G -> A187R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 11 {A187R:A -> A182R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 12 {A187R:A -> A188R:G: adjacent_5p } 0 13 {A188R:G -> A187R:A: adjacent_3p } 0 14 {A187R:A -> A189R:C: upward } 0 15 {A189R:C -> A187R:A: downward } 0 16 {A188R:G -> A189R:C: adjacent_5p } 0 17 {A189R:C -> A188R:G: adjacent_3p } 0 18 {A189R:C -> A190R:C: adjacent_5p } 0 19 {A190R:C -> A189R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 A195R:G 0 1 A196R:C 0 2 A197R:C 0 3 A216R:G 0 4 A217R:G 0 5 A218R:G 0 6 A219R:C 0 [Edges] 0 {A195R:G -> A196R:C: adjacent_5p upward } 0 1 {A196R:C -> A195R:G: adjacent_3p downward } 0 2 {A195R:G -> A219R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A219R:C -> A195R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A196R:C -> A197R:C: adjacent_5p } 0 5 {A197R:C -> A196R:C: adjacent_3p } 0 6 {A196R:C -> A217R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A217R:G -> A196R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A197R:C -> A216R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A216R:G -> A197R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A216R:G -> A217R:G: adjacent_5p upward } 0 11 {A217R:G -> A216R:G: adjacent_3p downward } 0 12 {A217R:G -> A218R:G: adjacent_5p } 0 13 {A218R:G -> A217R:G: adjacent_3p } 0 14 {A217R:G -> A219R:C: upward } 0 15 {A219R:C -> A217R:G: downward } 0 16 {A218R:G -> A219R:C: adjacent_5p downward } 0 17 {A219R:C -> A218R:G: adjacent_3p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:G 0 2 A7R:A 0 3 A28R:A 0 4 A29R:A 0 5 A30R:A 0 6 A31R:C 0 [Edges] 0 {A5R:G -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A30R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A30R:A -> A6R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A7R:A -> A28R:A: pairing parallel trans I Ww/Ww } 0 9 {A28R:A -> A7R:A: pairing parallel trans I Ww/Ww } 0 10 {A28R:A -> A29R:A: adjacent_5p } 0 11 {A29R:A -> A28R:A: adjacent_3p } 0 12 {A28R:A -> A30R:A: outward } 0 13 {A30R:A -> A28R:A: outward } 0 14 {A29R:A -> A30R:A: adjacent_5p } 0 15 {A30R:A -> A29R:A: adjacent_3p } 0 16 {A30R:A -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:A 0 2 A8R:C 0 3 A27R:G 0 4 A28R:A 0 5 A29R:A 0 6 A30R:A 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A30R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A30R:A -> A6R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A28R:A: pairing parallel trans I Ww/Ww } 0 7 {A28R:A -> A7R:A: pairing parallel trans I Ww/Ww } 0 8 {A8R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A27R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A27R:G -> A28R:A: adjacent_5p inward } 0 11 {A28R:A -> A27R:G: adjacent_3p inward } 0 12 {A28R:A -> A29R:A: adjacent_5p } 0 13 {A29R:A -> A28R:A: adjacent_3p } 0 14 {A28R:A -> A30R:A: outward } 0 15 {A30R:A -> A28R:A: outward } 0 16 {A29R:A -> A30R:A: adjacent_5p } 0 17 {A30R:A -> A29R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . MOLECULE: [GraphModel] [Vertices] 0 B25R:U 0 1 B26R:G 0 2 B27R:A 0 3 B38R:U 0 4 B39R:C 0 5 B40R:U 0 6 B41R:C 0 [Edges] 0 {B25R:U -> B26R:G: adjacent_5p } 0 1 {B26R:G -> B25R:U: adjacent_3p } 0 2 {B25R:U -> B41R:C: pairing antiparallel trans one_hbond Ww/Ss } 0 3 {B41R:C -> B25R:U: pairing antiparallel trans one_hbond Ss/Ww } 0 4 {B26R:G -> B27R:A: adjacent_5p upward } 0 5 {B27R:A -> B26R:G: adjacent_3p downward } 0 6 {B26R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B39R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B27R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B38R:U -> B27R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B38R:U -> B39R:C: adjacent_5p } 0 11 {B39R:C -> B38R:U: adjacent_3p } 0 12 {B39R:C -> B40R:U: adjacent_5p } 0 13 {B40R:U -> B39R:C: adjacent_3p } 0 14 {B40R:U -> B41R:C: adjacent_5p upward } 0 15 {B41R:C -> B40R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 13R:G 0 1 14R:U 0 2 15R:A 0 3 5R:U 0 4 6R:A 0 5 7R:C 0 6 8R:G 0 [Edges] 0 {5R:U -> 6R:A: adjacent_5p upward } 0 1 {6R:A -> 5R:U: adjacent_3p downward } 0 2 {5R:U -> 15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {15R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {6R:A -> 7R:C: adjacent_5p upward } 0 5 {7R:C -> 6R:A: adjacent_3p downward } 0 6 {6R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {14R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {6R:A -> 15R:A: outward } 0 9 {15R:A -> 6R:A: outward } 0 10 {7R:C -> 8R:G: adjacent_5p } 0 11 {8R:G -> 7R:C: adjacent_3p } 0 12 {7R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {13R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {8R:G -> 13R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 15 {13R:G -> 8R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 16 {13R:G -> 14R:U: adjacent_5p upward } 0 17 {14R:U -> 13R:G: adjacent_3p downward } 0 18 {14R:U -> 15R:A: adjacent_5p upward } 0 19 {15R:A -> 14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . 13 15 1 17 . 18 . 7 . . 2 . 19 . 3 9 . . 3 . . 2 . 0 . . 4 . 6 8 1 . 4 . 5 12 . . . 5 . 10 6 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C61R:C 0 1 C62R:C 0 2 C63R:G 0 3 C51R:C 0 4 C52R:G 0 5 C53R:G 0 6 C54R:U 0 [Edges] 0 {C51R:C -> C52R:G: adjacent_5p } 0 1 {C52R:G -> C51R:C: adjacent_3p } 0 2 {C51R:C -> C63R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C63R:G -> C51R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C52R:G -> C53R:G: adjacent_5p upward } 0 5 {C53R:G -> C52R:G: adjacent_3p downward } 0 6 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C52R:G -> C63R:G: outward } 0 9 {C63R:G -> C52R:G: outward } 0 10 {C53R:G -> C54R:U: adjacent_5p upward } 0 11 {C54R:U -> C53R:G: adjacent_3p downward } 0 12 {C53R:G -> C61R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {C61R:C -> C53R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {C54R:U -> C61R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 15 {C61R:C -> C54R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 16 {C61R:C -> C62R:C: adjacent_5p } 0 17 {C62R:C -> C61R:C: adjacent_3p } 0 18 {C62R:C -> C63R:G: adjacent_5p } 0 19 {C63R:G -> C62R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . 13 15 1 17 . 18 . 7 . . 2 . 19 . 3 9 . . 3 . . 2 . 0 . . 4 . 6 8 1 . 4 . 5 12 . . . 5 . 10 6 14 . . . . 11 . [GraphModel] [Vertices] 0 D61R:C 0 1 D62R:C 0 2 D63R:G 0 3 D51R:C 0 4 D52R:G 0 5 D53R:G 0 6 D54R:U 0 [Edges] 0 {D51R:C -> D52R:G: adjacent_5p } 0 1 {D52R:G -> D51R:C: adjacent_3p } 0 2 {D51R:C -> D63R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D63R:G -> D51R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D52R:G -> D53R:G: adjacent_5p upward } 0 5 {D53R:G -> D52R:G: adjacent_3p downward } 0 6 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D52R:G -> D63R:G: outward } 0 9 {D63R:G -> D52R:G: outward } 0 10 {D53R:G -> D54R:U: adjacent_5p upward } 0 11 {D54R:U -> D53R:G: adjacent_3p downward } 0 12 {D53R:G -> D61R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {D61R:C -> D53R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {D54R:U -> D61R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 15 {D61R:C -> D54R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 16 {D61R:C -> D62R:C: adjacent_5p } 0 17 {D62R:C -> D61R:C: adjacent_3p } 0 18 {D62R:C -> D63R:G: adjacent_5p } 0 19 {D63R:G -> D62R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . 13 15 1 17 . 18 . 7 . . 2 . 19 . 3 9 . . 3 . . 2 . 0 . . 4 . 6 8 1 . 4 . 5 12 . . . 5 . 10 6 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 '0'32R:G 0 1 '0'33R:G 0 2 '0'34R:C 0 3 '0'448R:G 0 4 '0'449R:A 0 5 '0'450R:C 0 6 '0'451R:C 0 [Edges] 0 {'0'32R:G -> '0'33R:G: adjacent_5p upward } 0 1 {'0'33R:G -> '0'32R:G: adjacent_3p downward } 0 2 {'0'32R:G -> '0'451R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'451R:C -> '0'32R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'33R:G -> '0'34R:C: adjacent_5p upward } 0 5 {'0'34R:C -> '0'33R:G: adjacent_3p downward } 0 6 {'0'33R:G -> '0'450R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'450R:C -> '0'33R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'34R:C -> '0'448R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'448R:G -> '0'34R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'448R:G -> '0'449R:A: adjacent_5p } 0 11 {'0'449R:A -> '0'448R:G: adjacent_3p } 0 12 {'0'449R:A -> '0'450R:C: adjacent_5p } 0 13 {'0'450R:C -> '0'449R:A: adjacent_3p } 0 14 {'0'450R:C -> '0'451R:C: adjacent_5p } 0 15 {'0'451R:C -> '0'450R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'33R:G 0 1 '0'34R:C 0 2 '0'35R:U 0 3 '0'447R:A 0 4 '0'448R:G 0 5 '0'449R:A 0 6 '0'450R:C 0 [Edges] 0 {'0'33R:G -> '0'34R:C: adjacent_5p upward } 0 1 {'0'34R:C -> '0'33R:G: adjacent_3p downward } 0 2 {'0'33R:G -> '0'450R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'450R:C -> '0'33R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'34R:C -> '0'35R:U: adjacent_5p upward } 0 5 {'0'35R:U -> '0'34R:C: adjacent_3p downward } 0 6 {'0'34R:C -> '0'448R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'448R:G -> '0'34R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'35R:U -> '0'447R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'447R:A -> '0'35R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'447R:A -> '0'448R:G: adjacent_5p upward } 0 11 {'0'448R:G -> '0'447R:A: adjacent_3p downward } 0 12 {'0'448R:G -> '0'449R:A: adjacent_5p } 0 13 {'0'449R:A -> '0'448R:G: adjacent_3p } 0 14 {'0'449R:A -> '0'450R:C: adjacent_5p } 0 15 {'0'450R:C -> '0'449R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'38R:G 0 1 '0'39R:G 0 2 '0'40R:C 0 3 '0'441R:A 0 4 '0'442R:A 0 5 '0'443R:C 0 6 '0'444R:C 0 [Edges] 0 {'0'38R:G -> '0'39R:G: adjacent_5p upward } 0 1 {'0'39R:G -> '0'38R:G: adjacent_3p downward } 0 2 {'0'38R:G -> '0'444R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'444R:C -> '0'38R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'39R:G -> '0'40R:C: adjacent_5p upward } 0 5 {'0'40R:C -> '0'39R:G: adjacent_3p downward } 0 6 {'0'39R:G -> '0'443R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'443R:C -> '0'39R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'40R:C -> '0'441R:A: pairing antiparallel cis 71 Ww/Ww } 0 9 {'0'441R:A -> '0'40R:C: pairing antiparallel cis 71 Ww/Ww } 0 10 {'0'40R:C -> '0'442R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 11 {'0'442R:A -> '0'40R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 12 {'0'441R:A -> '0'442R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {'0'442R:A -> '0'441R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {'0'442R:A -> '0'443R:C: adjacent_5p upward } 0 15 {'0'443R:C -> '0'442R:A: adjacent_3p downward } 0 16 {'0'443R:C -> '0'444R:C: adjacent_5p } 0 17 {'0'444R:C -> '0'443R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . . 11 13 . 14 . 5 . 7 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'39R:G 0 1 '0'40R:C 0 2 '0'41R:G 0 3 '0'440R:C 0 4 '0'441R:A 0 5 '0'442R:A 0 6 '0'443R:C 0 [Edges] 0 {'0'39R:G -> '0'40R:C: adjacent_5p upward } 0 1 {'0'40R:C -> '0'39R:G: adjacent_3p downward } 0 2 {'0'39R:G -> '0'443R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'443R:C -> '0'39R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'40R:C -> '0'41R:G: adjacent_5p upward } 0 5 {'0'41R:G -> '0'40R:C: adjacent_3p downward } 0 6 {'0'40R:C -> '0'441R:A: pairing antiparallel cis 71 Ww/Ww } 0 7 {'0'441R:A -> '0'40R:C: pairing antiparallel cis 71 Ww/Ww } 0 8 {'0'40R:C -> '0'442R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 9 {'0'442R:A -> '0'40R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 10 {'0'41R:G -> '0'440R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'440R:C -> '0'41R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'440R:C -> '0'441R:A: adjacent_5p upward } 0 13 {'0'441R:A -> '0'440R:C: adjacent_3p downward } 0 14 {'0'441R:A -> '0'442R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 15 {'0'442R:A -> '0'441R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 16 {'0'442R:A -> '0'443R:C: adjacent_5p upward } 0 17 {'0'443R:C -> '0'442R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . 9 . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'41R:G 0 1 '0'42R:C 0 2 '0'43R:U 0 3 '0'148R:A 0 4 '0'149R:G 0 5 '0'150R:G 0 6 '0'151R:A 0 [Edges] 0 {'0'41R:G -> '0'42R:C: adjacent_5p } 0 1 {'0'42R:C -> '0'41R:G: adjacent_3p } 0 2 {'0'41R:G -> '0'151R:A: pairing parallel trans one_hbond Sw/Ww } 0 3 {'0'151R:A -> '0'41R:G: pairing parallel trans one_hbond Ww/Sw } 0 4 {'0'42R:C -> '0'43R:U: adjacent_5p } 0 5 {'0'43R:U -> '0'42R:C: adjacent_3p } 0 6 {'0'42R:C -> '0'149R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'149R:G -> '0'42R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'43R:U -> '0'148R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'148R:A -> '0'43R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'43R:U -> '0'149R:G: outward } 0 11 {'0'149R:G -> '0'43R:U: outward } 0 12 {'0'148R:A -> '0'149R:G: adjacent_5p upward } 0 13 {'0'149R:G -> '0'148R:A: adjacent_3p downward } 0 14 {'0'149R:G -> '0'150R:G: adjacent_5p upward } 0 15 {'0'150R:G -> '0'149R:G: adjacent_3p downward } 0 16 {'0'150R:G -> '0'151R:A: adjacent_5p } 0 17 {'0'151R:A -> '0'150R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'48R:A 0 1 '0'49R:A 0 2 '0'50R:G 0 3 '0'111R:C 0 4 '0'112R:G 0 5 '0'113R:A 0 6 '0'114R:A 0 [Edges] 0 {'0'48R:A -> '0'49R:A: adjacent_5p upward } 0 1 {'0'49R:A -> '0'48R:A: adjacent_3p downward } 0 2 {'0'48R:A -> '0'113R:A: outward } 0 3 {'0'113R:A -> '0'48R:A: outward } 0 4 {'0'48R:A -> '0'114R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'114R:A -> '0'48R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'49R:A -> '0'50R:G: adjacent_5p upward } 0 7 {'0'50R:G -> '0'49R:A: adjacent_3p downward } 0 8 {'0'49R:A -> '0'112R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'112R:G -> '0'49R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'50R:G -> '0'111R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'111R:C -> '0'50R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'111R:C -> '0'112R:G: adjacent_5p upward } 0 13 {'0'112R:G -> '0'111R:C: adjacent_3p downward } 0 14 {'0'112R:G -> '0'113R:A: adjacent_5p } 0 15 {'0'113R:A -> '0'112R:G: adjacent_3p } 0 16 {'0'112R:G -> '0'114R:A: inward } 0 17 {'0'114R:A -> '0'112R:G: inward } 0 18 {'0'113R:A -> '0'114R:A: adjacent_5p outward } 0 19 {'0'114R:A -> '0'113R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . 8 . . 2 . 7 . 10 . . . 3 . . 11 . 12 . . 4 . 9 . 13 . 14 16 5 3 . . . 15 . 18 6 5 . . . 17 19 . [GraphModel] [Vertices] 0 '0'111R:C 0 1 '0'112R:G 0 2 '0'113R:A 0 3 '0'47R:G 0 4 '0'48R:A 0 5 '0'49R:A 0 6 '0'50R:G 0 [Edges] 0 {'0'47R:G -> '0'48R:A: adjacent_5p } 0 1 {'0'48R:A -> '0'47R:G: adjacent_3p } 0 2 {'0'47R:G -> '0'113R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 3 {'0'113R:A -> '0'47R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 4 {'0'48R:A -> '0'49R:A: adjacent_5p upward } 0 5 {'0'49R:A -> '0'48R:A: adjacent_3p downward } 0 6 {'0'48R:A -> '0'113R:A: outward } 0 7 {'0'113R:A -> '0'48R:A: outward } 0 8 {'0'49R:A -> '0'50R:G: adjacent_5p upward } 0 9 {'0'50R:G -> '0'49R:A: adjacent_3p downward } 0 10 {'0'49R:A -> '0'112R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {'0'112R:G -> '0'49R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {'0'50R:G -> '0'111R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'111R:C -> '0'50R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'111R:C -> '0'112R:G: adjacent_5p upward } 0 15 {'0'112R:G -> '0'111R:C: adjacent_3p downward } 0 16 {'0'112R:G -> '0'113R:A: adjacent_5p } 0 17 {'0'113R:A -> '0'112R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 3 7 . . 3 . . 2 . 0 . . 4 . . 6 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'152R:A 0 1 '0'153R:C 0 2 '0'154R:C 0 3 '0'182R:G 0 4 '0'183R:A 0 5 '0'184R:G 0 6 '0'185R:G 0 [Edges] 0 {'0'152R:A -> '0'153R:C: adjacent_5p upward } 0 1 {'0'153R:C -> '0'152R:A: adjacent_3p downward } 0 2 {'0'152R:A -> '0'185R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {'0'185R:G -> '0'152R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {'0'153R:C -> '0'154R:C: adjacent_5p } 0 5 {'0'154R:C -> '0'153R:C: adjacent_3p } 0 6 {'0'153R:C -> '0'184R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'184R:G -> '0'153R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'154R:C -> '0'182R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'182R:G -> '0'154R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'182R:G -> '0'183R:A: adjacent_5p } 0 11 {'0'183R:A -> '0'182R:G: adjacent_3p } 0 12 {'0'183R:A -> '0'184R:G: adjacent_5p upward } 0 13 {'0'184R:G -> '0'183R:A: adjacent_3p downward } 0 14 {'0'184R:G -> '0'185R:G: adjacent_5p upward } 0 15 {'0'185R:G -> '0'184R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'153R:C 0 1 '0'154R:C 0 2 '0'155R:C 0 3 '0'181R:G 0 4 '0'182R:G 0 5 '0'183R:A 0 6 '0'184R:G 0 [Edges] 0 {'0'153R:C -> '0'154R:C: adjacent_5p } 0 1 {'0'154R:C -> '0'153R:C: adjacent_3p } 0 2 {'0'153R:C -> '0'184R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'184R:G -> '0'153R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'154R:C -> '0'155R:C: adjacent_5p } 0 5 {'0'155R:C -> '0'154R:C: adjacent_3p } 0 6 {'0'154R:C -> '0'182R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'182R:G -> '0'154R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'155R:C -> '0'181R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'181R:G -> '0'155R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'181R:G -> '0'182R:G: adjacent_5p upward } 0 11 {'0'182R:G -> '0'181R:G: adjacent_3p downward } 0 12 {'0'182R:G -> '0'183R:A: adjacent_5p } 0 13 {'0'183R:A -> '0'182R:G: adjacent_3p } 0 14 {'0'183R:A -> '0'184R:G: adjacent_5p upward } 0 15 {'0'184R:G -> '0'183R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'159R:G 0 1 '0'160R:A 0 2 '0'161R:A 0 3 '0'174R:A 0 4 '0'175R:G 0 5 '0'176R:U 0 6 '0'177R:A 0 [Edges] 0 {'0'159R:G -> '0'160R:A: adjacent_5p } 0 1 {'0'160R:A -> '0'159R:G: adjacent_3p } 0 2 {'0'159R:G -> '0'175R:G: inward } 0 3 {'0'175R:G -> '0'159R:G: inward } 0 4 {'0'159R:G -> '0'177R:A: pairing antiparallel trans one_hbond Ss/Hw } 0 5 {'0'177R:A -> '0'159R:G: pairing antiparallel trans one_hbond Hw/Ss } 0 6 {'0'160R:A -> '0'161R:A: adjacent_5p upward } 0 7 {'0'161R:A -> '0'160R:A: adjacent_3p downward } 0 8 {'0'160R:A -> '0'176R:U: pairing antiparallel trans XXIV Hh/Ww } 0 9 {'0'176R:U -> '0'160R:A: pairing antiparallel trans XXIV Ww/Hh } 0 10 {'0'160R:A -> '0'177R:A: outward } 0 11 {'0'177R:A -> '0'160R:A: outward } 0 12 {'0'161R:A -> '0'174R:A: pairing parallel trans II Hh/Hh } 0 13 {'0'174R:A -> '0'161R:A: pairing parallel trans II Hh/Hh } 0 14 {'0'174R:A -> '0'175R:G: adjacent_5p } 0 15 {'0'175R:G -> '0'174R:A: adjacent_3p } 0 16 {'0'174R:A -> '0'176R:U: outward } 0 17 {'0'176R:U -> '0'174R:A: outward } 0 18 {'0'175R:G -> '0'176R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 19 {'0'176R:U -> '0'175R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 20 {'0'176R:U -> '0'177R:A: adjacent_5p } 0 21 {'0'177R:A -> '0'176R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . . 8 10 2 . 7 . 12 . . . 3 . . 13 . 14 16 . 4 3 . . 15 . 18 . 5 . 9 . 17 19 . 20 6 5 11 . . . 21 . [GraphModel] [Vertices] 0 '0'160R:A 0 1 '0'161R:A 0 2 '0'162R:C 0 3 '0'173R:C 0 4 '0'174R:A 0 5 '0'175R:G 0 6 '0'176R:U 0 [Edges] 0 {'0'160R:A -> '0'161R:A: adjacent_5p upward } 0 1 {'0'161R:A -> '0'160R:A: adjacent_3p downward } 0 2 {'0'160R:A -> '0'176R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {'0'176R:U -> '0'160R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {'0'161R:A -> '0'162R:C: adjacent_5p upward } 0 5 {'0'162R:C -> '0'161R:A: adjacent_3p downward } 0 6 {'0'161R:A -> '0'174R:A: pairing parallel trans II Hh/Hh } 0 7 {'0'174R:A -> '0'161R:A: pairing parallel trans II Hh/Hh } 0 8 {'0'162R:C -> '0'173R:C: pairing antiparallel trans 132 Hh/Bs } 0 9 {'0'173R:C -> '0'162R:C: pairing antiparallel trans 132 Bs/Hh } 0 10 {'0'173R:C -> '0'174R:A: adjacent_5p inward } 0 11 {'0'174R:A -> '0'173R:C: adjacent_3p inward } 0 12 {'0'174R:A -> '0'175R:G: adjacent_5p } 0 13 {'0'175R:G -> '0'174R:A: adjacent_3p } 0 14 {'0'174R:A -> '0'176R:U: outward } 0 15 {'0'176R:U -> '0'174R:A: outward } 0 16 {'0'175R:G -> '0'176R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 17 {'0'176R:U -> '0'175R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 '0'194R:A 0 1 '0'195R:C 0 2 '0'196R:G 0 3 '0'199R:A 0 4 '0'200R:U 0 5 '0'201R:G 0 6 '0'202R:U 0 [Edges] 0 {'0'194R:A -> '0'195R:C: adjacent_5p upward } 0 1 {'0'195R:C -> '0'194R:A: adjacent_3p downward } 0 2 {'0'194R:A -> '0'202R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'202R:U -> '0'194R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'195R:C -> '0'196R:G: adjacent_5p upward } 0 5 {'0'196R:G -> '0'195R:C: adjacent_3p downward } 0 6 {'0'195R:C -> '0'201R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'201R:G -> '0'195R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'196R:G -> '0'199R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {'0'199R:A -> '0'196R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {'0'199R:A -> '0'200R:U: adjacent_5p } 0 11 {'0'200R:U -> '0'199R:A: adjacent_3p } 0 12 {'0'199R:A -> '0'201R:G: upward } 0 13 {'0'201R:G -> '0'199R:A: downward } 0 14 {'0'200R:U -> '0'201R:G: adjacent_5p } 0 15 {'0'201R:G -> '0'200R:U: adjacent_3p } 0 16 {'0'201R:G -> '0'202R:U: adjacent_5p upward } 0 17 {'0'202R:U -> '0'201R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'201R:G 0 1 '0'202R:U 0 2 '0'203R:G 0 3 '0'192R:A 0 4 '0'193R:A 0 5 '0'194R:A 0 6 '0'195R:C 0 [Edges] 0 {'0'192R:A -> '0'193R:A: adjacent_5p } 0 1 {'0'193R:A -> '0'192R:A: adjacent_3p } 0 2 {'0'192R:A -> '0'194R:A: upward } 0 3 {'0'194R:A -> '0'192R:A: downward } 0 4 {'0'192R:A -> '0'203R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {'0'203R:G -> '0'192R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {'0'193R:A -> '0'194R:A: adjacent_5p } 0 7 {'0'194R:A -> '0'193R:A: adjacent_3p } 0 8 {'0'194R:A -> '0'195R:C: adjacent_5p upward } 0 9 {'0'195R:C -> '0'194R:A: adjacent_3p downward } 0 10 {'0'194R:A -> '0'202R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'202R:U -> '0'194R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'195R:C -> '0'201R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'201R:G -> '0'195R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'201R:G -> '0'202R:U: adjacent_5p upward } 0 15 {'0'202R:U -> '0'201R:G: adjacent_3p downward } 0 16 {'0'202R:U -> '0'203R:G: adjacent_5p upward } 0 17 {'0'203R:G -> '0'202R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'203R:G 0 1 '0'204R:A 0 2 '0'205R:U 0 3 '0'189R:A 0 4 '0'190R:G 0 5 '0'191R:A 0 6 '0'192R:A 0 [Edges] 0 {'0'189R:A -> '0'190R:G: adjacent_5p upward } 0 1 {'0'190R:G -> '0'189R:A: adjacent_3p downward } 0 2 {'0'189R:A -> '0'205R:U: pairing antiparallel cis one_hbond Bs/Ss } 0 3 {'0'205R:U -> '0'189R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 4 {'0'190R:G -> '0'191R:A: adjacent_5p } 0 5 {'0'191R:A -> '0'190R:G: adjacent_3p } 0 6 {'0'190R:G -> '0'204R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 7 {'0'204R:A -> '0'190R:G: pairing antiparallel cis one_hbond Bs/Ss } 0 8 {'0'191R:A -> '0'192R:A: adjacent_5p } 0 9 {'0'192R:A -> '0'191R:A: adjacent_3p } 0 10 {'0'191R:A -> '0'204R:A: outward } 0 11 {'0'204R:A -> '0'191R:A: outward } 0 12 {'0'192R:A -> '0'203R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'203R:G -> '0'192R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'203R:G -> '0'204R:A: adjacent_5p } 0 15 {'0'204R:A -> '0'203R:G: adjacent_3p } 0 16 {'0'204R:A -> '0'205R:U: adjacent_5p upward } 0 17 {'0'205R:U -> '0'204R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 11 . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'219R:G 0 1 '0'220R:C 0 2 '0'221R:G 0 3 '0'165R:A 0 4 '0'166R:A 0 5 '0'167R:A 0 6 '0'168R:C 0 [Edges] 0 {'0'165R:A -> '0'166R:A: adjacent_5p } 0 1 {'0'166R:A -> '0'165R:A: adjacent_3p } 0 2 {'0'165R:A -> '0'168R:C: inward } 0 3 {'0'168R:C -> '0'165R:A: inward } 0 4 {'0'165R:A -> '0'221R:G: pairing antiparallel cis one_hbond 58 Ss/Ws } 0 5 {'0'221R:G -> '0'165R:A: pairing antiparallel cis one_hbond 58 Ws/Ss } 0 6 {'0'166R:A -> '0'167R:A: adjacent_5p } 0 7 {'0'167R:A -> '0'166R:A: adjacent_3p } 0 8 {'0'167R:A -> '0'168R:C: adjacent_5p upward } 0 9 {'0'168R:C -> '0'167R:A: adjacent_3p downward } 0 10 {'0'168R:C -> '0'219R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'219R:G -> '0'168R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'219R:G -> '0'220R:C: adjacent_5p } 0 13 {'0'220R:C -> '0'219R:G: adjacent_3p } 0 14 {'0'219R:G -> '0'221R:G: outward } 0 15 {'0'221R:G -> '0'219R:G: outward } 0 16 {'0'220R:C -> '0'221R:G: adjacent_5p } 0 17 {'0'221R:G -> '0'220R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 14 . . . 11 1 13 . 16 . . . . 2 15 17 . 5 . . . 3 . . 4 . 0 . 2 4 . . . 1 . 6 . 5 . . . . 7 . 8 6 10 . . 3 . 9 . [GraphModel] [Vertices] 0 '0'225R:G 0 1 '0'226R:A 0 2 '0'227R:A 0 3 '0'212R:A 0 4 '0'213R:G 0 5 '0'214R:U 0 6 '0'215R:A 0 [Edges] 0 {'0'212R:A -> '0'213R:G: adjacent_5p } 0 1 {'0'213R:G -> '0'212R:A: adjacent_3p } 0 2 {'0'212R:A -> '0'214R:U: outward } 0 3 {'0'214R:U -> '0'212R:A: outward } 0 4 {'0'212R:A -> '0'227R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'227R:A -> '0'212R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'213R:G -> '0'214R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'214R:U -> '0'213R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'213R:G -> '0'225R:G: inward } 0 9 {'0'225R:G -> '0'213R:G: inward } 0 10 {'0'214R:U -> '0'215R:A: adjacent_5p upward } 0 11 {'0'215R:A -> '0'214R:U: adjacent_3p downward } 0 12 {'0'214R:U -> '0'226R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {'0'226R:A -> '0'214R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {'0'215R:A -> '0'225R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'225R:G -> '0'215R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'215R:A -> '0'226R:A: outward } 0 17 {'0'226R:A -> '0'215R:A: outward } 0 18 {'0'225R:G -> '0'226R:A: adjacent_5p } 0 19 {'0'226R:A -> '0'225R:G: adjacent_3p } 0 20 {'0'226R:A -> '0'227R:A: adjacent_5p upward } 0 21 {'0'227R:A -> '0'226R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 '0'226R:A 0 1 '0'227R:A 0 2 '0'228R:C 0 3 '0'211R:U 0 4 '0'212R:A 0 5 '0'213R:G 0 6 '0'214R:U 0 [Edges] 0 {'0'211R:U -> '0'212R:A: adjacent_5p inward } 0 1 {'0'212R:A -> '0'211R:U: adjacent_3p inward } 0 2 {'0'211R:U -> '0'228R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 3 {'0'228R:C -> '0'211R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 4 {'0'212R:A -> '0'213R:G: adjacent_5p } 0 5 {'0'213R:G -> '0'212R:A: adjacent_3p } 0 6 {'0'212R:A -> '0'214R:U: outward } 0 7 {'0'214R:U -> '0'212R:A: outward } 0 8 {'0'212R:A -> '0'227R:A: pairing parallel trans II Hh/Hh } 0 9 {'0'227R:A -> '0'212R:A: pairing parallel trans II Hh/Hh } 0 10 {'0'213R:G -> '0'214R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {'0'214R:U -> '0'213R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {'0'214R:U -> '0'226R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {'0'226R:A -> '0'214R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {'0'226R:A -> '0'227R:A: adjacent_5p upward } 0 15 {'0'227R:A -> '0'226R:A: adjacent_3p downward } 0 16 {'0'227R:A -> '0'228R:C: adjacent_5p upward } 0 17 {'0'228R:C -> '0'227R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 '0'273R:G 0 1 '0'274R:G 0 2 '0'275R:G 0 3 '0'374R:U 0 4 '0'375R:G 0 5 '0'376R:C 0 6 '0'377R:C 0 [Edges] 0 {'0'273R:G -> '0'274R:G: adjacent_5p upward } 0 1 {'0'274R:G -> '0'273R:G: adjacent_3p downward } 0 2 {'0'273R:G -> '0'377R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'377R:C -> '0'273R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'274R:G -> '0'275R:G: adjacent_5p upward } 0 5 {'0'275R:G -> '0'274R:G: adjacent_3p downward } 0 6 {'0'274R:G -> '0'376R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'376R:C -> '0'274R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'275R:G -> '0'374R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {'0'374R:U -> '0'275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {'0'374R:U -> '0'375R:G: adjacent_5p } 0 11 {'0'375R:G -> '0'374R:U: adjacent_3p } 0 12 {'0'375R:G -> '0'376R:C: adjacent_5p } 0 13 {'0'376R:C -> '0'375R:G: adjacent_3p } 0 14 {'0'376R:C -> '0'377R:C: adjacent_5p } 0 15 {'0'377R:C -> '0'376R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'274R:G 0 1 '0'275R:G 0 2 '0'276R:C 0 3 '0'373R:G 0 4 '0'374R:U 0 5 '0'375R:G 0 6 '0'376R:C 0 [Edges] 0 {'0'274R:G -> '0'275R:G: adjacent_5p upward } 0 1 {'0'275R:G -> '0'274R:G: adjacent_3p downward } 0 2 {'0'274R:G -> '0'376R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'376R:C -> '0'274R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'275R:G -> '0'276R:C: adjacent_5p upward } 0 5 {'0'276R:C -> '0'275R:G: adjacent_3p downward } 0 6 {'0'275R:G -> '0'374R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'374R:U -> '0'275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'276R:C -> '0'373R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'373R:G -> '0'276R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'373R:G -> '0'374R:U: adjacent_5p upward } 0 11 {'0'374R:U -> '0'373R:G: adjacent_3p downward } 0 12 {'0'374R:U -> '0'375R:G: adjacent_5p } 0 13 {'0'375R:G -> '0'374R:U: adjacent_3p } 0 14 {'0'375R:G -> '0'376R:C: adjacent_5p } 0 15 {'0'376R:C -> '0'375R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'293R:A 0 1 '0'294R:C 0 2 '0'295R:C 0 3 '0'356R:C 0 4 '0'357R:A 0 5 '0'358R:G 0 6 '0'359R:U 0 [Edges] 0 {'0'293R:A -> '0'294R:C: adjacent_5p upward } 0 1 {'0'294R:C -> '0'293R:A: adjacent_3p downward } 0 2 {'0'293R:A -> '0'359R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {'0'359R:U -> '0'293R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {'0'294R:C -> '0'295R:C: adjacent_5p upward } 0 5 {'0'295R:C -> '0'294R:C: adjacent_3p downward } 0 6 {'0'295R:C -> '0'356R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 7 {'0'356R:C -> '0'295R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 8 {'0'356R:C -> '0'357R:A: adjacent_5p inward } 0 9 {'0'357R:A -> '0'356R:C: adjacent_3p inward } 0 10 {'0'357R:A -> '0'358R:G: adjacent_5p } 0 11 {'0'358R:G -> '0'357R:A: adjacent_3p } 0 12 {'0'357R:A -> '0'359R:U: outward } 0 13 {'0'359R:U -> '0'357R:A: outward } 0 14 {'0'358R:G -> '0'359R:U: adjacent_5p } 0 15 {'0'359R:U -> '0'358R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 12 5 . . . . 11 . 14 6 3 . . . 13 15 . [GraphModel] [Vertices] 0 '0'311R:C 0 1 '0'312R:U 0 2 '0'313R:U 0 3 '0'317R:A 0 4 '0'318R:C 0 5 '0'319R:A 0 6 '0'320R:G 0 [Edges] 0 {'0'311R:C -> '0'312R:U: adjacent_5p upward } 0 1 {'0'312R:U -> '0'311R:C: adjacent_3p downward } 0 2 {'0'311R:C -> '0'320R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'320R:G -> '0'311R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'312R:U -> '0'313R:U: adjacent_5p upward } 0 5 {'0'313R:U -> '0'312R:U: adjacent_3p downward } 0 6 {'0'312R:U -> '0'319R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'319R:A -> '0'312R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'313R:U -> '0'317R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {'0'317R:A -> '0'313R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {'0'317R:A -> '0'318R:C: adjacent_5p } 0 11 {'0'318R:C -> '0'317R:A: adjacent_3p } 0 12 {'0'317R:A -> '0'319R:A: upward } 0 13 {'0'319R:A -> '0'317R:A: downward } 0 14 {'0'318R:C -> '0'319R:A: adjacent_5p } 0 15 {'0'319R:A -> '0'318R:C: adjacent_3p } 0 16 {'0'319R:A -> '0'320R:G: adjacent_5p upward } 0 17 {'0'320R:G -> '0'319R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'321R:A 0 1 '0'322R:G 0 2 '0'323R:C 0 3 '0'307R:G 0 4 '0'308R:U 0 5 '0'309R:C 0 6 '0'310R:U 0 [Edges] 0 {'0'307R:G -> '0'308R:U: adjacent_5p } 0 1 {'0'308R:U -> '0'307R:G: adjacent_3p } 0 2 {'0'307R:G -> '0'309R:C: upward } 0 3 {'0'309R:C -> '0'307R:G: downward } 0 4 {'0'307R:G -> '0'323R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'323R:C -> '0'307R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'308R:U -> '0'309R:C: adjacent_5p } 0 7 {'0'309R:C -> '0'308R:U: adjacent_3p } 0 8 {'0'309R:C -> '0'310R:U: adjacent_5p } 0 9 {'0'310R:U -> '0'309R:C: adjacent_3p } 0 10 {'0'309R:C -> '0'322R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'322R:G -> '0'309R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'310R:U -> '0'321R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'321R:A -> '0'310R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'321R:A -> '0'322R:G: adjacent_5p upward } 0 15 {'0'322R:G -> '0'321R:A: adjacent_3p downward } 0 16 {'0'322R:G -> '0'323R:C: adjacent_5p upward } 0 17 {'0'323R:C -> '0'322R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'344R:C 0 1 '0'345R:G 0 2 '0'346R:U 0 3 '0'329R:A 0 4 '0'330R:C 0 5 '0'331R:A 0 6 '0'332R:G 0 [Edges] 0 {'0'329R:A -> '0'330R:C: adjacent_5p } 0 1 {'0'330R:C -> '0'329R:A: adjacent_3p } 0 2 {'0'329R:A -> '0'346R:U: pairing antiparallel cis 43 Ss/Ww } 0 3 {'0'346R:U -> '0'329R:A: pairing antiparallel cis 43 Ww/Ss } 0 4 {'0'330R:C -> '0'331R:A: adjacent_5p } 0 5 {'0'331R:A -> '0'330R:C: adjacent_3p } 0 6 {'0'331R:A -> '0'332R:G: adjacent_5p upward } 0 7 {'0'332R:G -> '0'331R:A: adjacent_3p downward } 0 8 {'0'331R:A -> '0'345R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'345R:G -> '0'331R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'332R:G -> '0'344R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'344R:C -> '0'332R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'344R:C -> '0'345R:G: adjacent_5p upward } 0 13 {'0'345R:G -> '0'344R:C: adjacent_3p downward } 0 14 {'0'345R:G -> '0'346R:U: adjacent_5p upward } 0 15 {'0'346R:U -> '0'345R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 '0'406R:G 0 1 '0'407R:A 0 2 '0'408R:A 0 3 '0'380R:A 0 4 '0'381R:G 0 5 '0'382R:U 0 6 '0'383R:A 0 [Edges] 0 {'0'380R:A -> '0'381R:G: adjacent_5p } 0 1 {'0'381R:G -> '0'380R:A: adjacent_3p } 0 2 {'0'380R:A -> '0'408R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'408R:A -> '0'380R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'381R:G -> '0'382R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 5 {'0'382R:U -> '0'381R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 6 {'0'381R:G -> '0'406R:G: inward } 0 7 {'0'406R:G -> '0'381R:G: inward } 0 8 {'0'382R:U -> '0'383R:A: adjacent_5p upward } 0 9 {'0'383R:A -> '0'382R:U: adjacent_3p downward } 0 10 {'0'382R:U -> '0'407R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {'0'407R:A -> '0'382R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {'0'383R:A -> '0'406R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'406R:G -> '0'383R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'383R:A -> '0'407R:A: outward } 0 15 {'0'407R:A -> '0'383R:A: outward } 0 16 {'0'406R:G -> '0'407R:A: adjacent_5p } 0 17 {'0'407R:A -> '0'406R:G: adjacent_3p } 0 18 {'0'407R:A -> '0'408R:A: adjacent_5p upward } 0 19 {'0'408R:A -> '0'407R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . 7 . 13 1 17 . 18 . . 11 15 2 . 19 . 3 . . . 3 . . 2 . 0 . . 4 6 . . 1 . 4 . 5 . 10 . . 5 . 8 6 12 14 . . . 9 . [GraphModel] [Vertices] 0 '0'475R:G 0 1 '0'476R:A 0 2 '0'477R:A 0 3 '0'463R:A 0 4 '0'464R:G 0 5 '0'465R:U 0 6 '0'466R:A 0 [Edges] 0 {'0'463R:A -> '0'464R:G: adjacent_5p } 0 1 {'0'464R:G -> '0'463R:A: adjacent_3p } 0 2 {'0'463R:A -> '0'465R:U: outward } 0 3 {'0'465R:U -> '0'463R:A: outward } 0 4 {'0'463R:A -> '0'477R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'477R:A -> '0'463R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'464R:G -> '0'465R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'465R:U -> '0'464R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'464R:G -> '0'475R:G: inward } 0 9 {'0'475R:G -> '0'464R:G: inward } 0 10 {'0'465R:U -> '0'466R:A: adjacent_5p } 0 11 {'0'466R:A -> '0'465R:U: adjacent_3p } 0 12 {'0'465R:U -> '0'476R:A: pairing antiparallel trans XXIV Ww/Hh } 0 13 {'0'476R:A -> '0'465R:U: pairing antiparallel trans XXIV Hh/Ww } 0 14 {'0'466R:A -> '0'475R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'475R:G -> '0'466R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'466R:A -> '0'476R:A: outward } 0 17 {'0'476R:A -> '0'466R:A: outward } 0 18 {'0'475R:G -> '0'476R:A: adjacent_5p } 0 19 {'0'476R:A -> '0'475R:G: adjacent_3p } 0 20 {'0'476R:A -> '0'477R:A: adjacent_5p upward } 0 21 {'0'477R:A -> '0'476R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . 9 . 15 1 19 . 20 . . 13 17 2 . 21 . 5 . . . 3 . . 4 . 0 2 . 4 8 . . 1 . 6 . 5 . 12 . 3 7 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 '0'501R:G 0 1 '0'502R:A 0 2 '0'503R:G 0 3 '0'488R:U 0 4 '0'489R:A 0 5 '0'490R:C 0 6 '0'491R:C 0 [Edges] 0 {'0'488R:U -> '0'489R:A: adjacent_5p } 0 1 {'0'489R:A -> '0'488R:U: adjacent_3p } 0 2 {'0'488R:U -> '0'503R:G: pairing antiparallel cis 84 Bs/Ww } 0 3 {'0'503R:G -> '0'488R:U: pairing antiparallel cis 84 Ww/Bs } 0 4 {'0'489R:A -> '0'490R:C: adjacent_5p upward } 0 5 {'0'490R:C -> '0'489R:A: adjacent_3p downward } 0 6 {'0'489R:A -> '0'503R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'503R:G -> '0'489R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'490R:C -> '0'491R:C: adjacent_5p upward } 0 9 {'0'491R:C -> '0'490R:C: adjacent_3p downward } 0 10 {'0'490R:C -> '0'502R:A: pairing antiparallel cis 71 Ww/Ww } 0 11 {'0'502R:A -> '0'490R:C: pairing antiparallel cis 71 Ww/Ww } 0 12 {'0'491R:C -> '0'501R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'501R:G -> '0'491R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'501R:G -> '0'502R:A: adjacent_5p upward } 0 15 {'0'502R:A -> '0'501R:G: adjacent_3p downward } 0 16 {'0'502R:A -> '0'503R:G: adjacent_5p upward } 0 17 {'0'503R:G -> '0'502R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 3 7 . . 3 . . 2 . 0 . . 4 . . 6 1 . 4 . 5 . 10 . . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'569R:A 0 1 '0'570R:C 0 2 '0'571R:C 0 3 '0'586R:C 0 4 '0'587R:A 0 5 '0'588R:G 0 6 '0'589R:U 0 [Edges] 0 {'0'569R:A -> '0'570R:C: adjacent_5p upward } 0 1 {'0'570R:C -> '0'569R:A: adjacent_3p downward } 0 2 {'0'569R:A -> '0'589R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {'0'589R:U -> '0'569R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {'0'570R:C -> '0'571R:C: adjacent_5p upward } 0 5 {'0'571R:C -> '0'570R:C: adjacent_3p downward } 0 6 {'0'571R:C -> '0'586R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 7 {'0'586R:C -> '0'571R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 8 {'0'586R:C -> '0'587R:A: adjacent_5p inward } 0 9 {'0'587R:A -> '0'586R:C: adjacent_3p inward } 0 10 {'0'587R:A -> '0'588R:G: adjacent_5p } 0 11 {'0'588R:G -> '0'587R:A: adjacent_3p } 0 12 {'0'587R:A -> '0'589R:U: outward } 0 13 {'0'589R:U -> '0'587R:A: outward } 0 14 {'0'588R:G -> '0'589R:U: adjacent_5p } 0 15 {'0'589R:U -> '0'588R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 12 5 . . . . 11 . 14 6 3 . . . 13 15 . [GraphModel] [Vertices] 0 '0'640R:G 0 1 '0'641R:G 0 2 '0'642R:G 0 3 '0'1358R:A 0 4 '0'1359R:U 0 5 '0'1360R:C 0 6 '0'1361R:C 0 [Edges] 0 {'0'640R:G -> '0'641R:G: adjacent_5p upward } 0 1 {'0'641R:G -> '0'640R:G: adjacent_3p downward } 0 2 {'0'640R:G -> '0'1361R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1361R:C -> '0'640R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'641R:G -> '0'642R:G: adjacent_5p upward } 0 5 {'0'642R:G -> '0'641R:G: adjacent_3p downward } 0 6 {'0'641R:G -> '0'1360R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1360R:C -> '0'641R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'642R:G -> '0'1358R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {'0'1358R:A -> '0'642R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {'0'1358R:A -> '0'1359R:U: adjacent_5p } 0 11 {'0'1359R:U -> '0'1358R:A: adjacent_3p } 0 12 {'0'1358R:A -> '0'1360R:C: upward } 0 13 {'0'1360R:C -> '0'1358R:A: downward } 0 14 {'0'1359R:U -> '0'1360R:C: adjacent_5p } 0 15 {'0'1360R:C -> '0'1359R:U: adjacent_3p } 0 16 {'0'1360R:C -> '0'1361R:C: adjacent_5p } 0 17 {'0'1361R:C -> '0'1360R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'645R:U 0 1 '0'646R:G 0 2 '0'647R:U 0 3 '0'758R:A 0 4 '0'759R:C 0 5 '0'760R:G 0 6 '0'761R:A 0 [Edges] 0 {'0'645R:U -> '0'646R:G: adjacent_5p } 0 1 {'0'646R:G -> '0'645R:U: adjacent_3p } 0 2 {'0'645R:U -> '0'761R:A: pairing parallel trans 42 Ws/Ss } 0 3 {'0'761R:A -> '0'645R:U: pairing parallel trans 42 Ss/Ws } 0 4 {'0'646R:G -> '0'647R:U: adjacent_5p upward } 0 5 {'0'647R:U -> '0'646R:G: adjacent_3p downward } 0 6 {'0'646R:G -> '0'759R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'759R:C -> '0'646R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'646R:G -> '0'761R:A: downward } 0 9 {'0'761R:A -> '0'646R:G: upward } 0 10 {'0'647R:U -> '0'758R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'758R:A -> '0'647R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'758R:A -> '0'759R:C: adjacent_5p upward } 0 13 {'0'759R:C -> '0'758R:A: adjacent_3p downward } 0 14 {'0'759R:C -> '0'760R:G: adjacent_5p } 0 15 {'0'760R:G -> '0'759R:C: adjacent_3p } 0 16 {'0'759R:C -> '0'761R:A: inward } 0 17 {'0'761R:A -> '0'759R:C: inward } 0 18 {'0'760R:G -> '0'761R:A: adjacent_5p upward } 0 19 {'0'761R:A -> '0'760R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 16 5 . . . . 15 . 18 6 3 9 . . 17 19 . [GraphModel] [Vertices] 0 '0'766R:A 0 1 '0'767R:A 0 2 '0'768R:U 0 3 '0'893R:C 0 4 '0'894R:A 0 5 '0'895R:A 0 6 '0'896R:C 0 [Edges] 0 {'0'766R:A -> '0'767R:A: adjacent_5p upward } 0 1 {'0'767R:A -> '0'766R:A: adjacent_3p downward } 0 2 {'0'766R:A -> '0'896R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {'0'896R:C -> '0'766R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {'0'767R:A -> '0'768R:U: adjacent_5p } 0 5 {'0'768R:U -> '0'767R:A: adjacent_3p } 0 6 {'0'767R:A -> '0'895R:A: pairing antiparallel trans V Hh/Ww } 0 7 {'0'895R:A -> '0'767R:A: pairing antiparallel trans V Ww/Hh } 0 8 {'0'768R:U -> '0'893R:C: pairing parallel trans one_hbond 105 Wh/Wh } 0 9 {'0'893R:C -> '0'768R:U: pairing parallel trans one_hbond 105 Wh/Wh } 0 10 {'0'768R:U -> '0'895R:A: outward } 0 11 {'0'895R:A -> '0'768R:U: outward } 0 12 {'0'893R:C -> '0'894R:A: adjacent_5p } 0 13 {'0'894R:A -> '0'893R:C: adjacent_3p } 0 14 {'0'894R:A -> '0'895R:A: adjacent_5p } 0 15 {'0'895R:A -> '0'894R:A: adjacent_3p } 0 16 {'0'895R:A -> '0'896R:C: adjacent_5p upward } 0 17 {'0'896R:C -> '0'895R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . 10 . 3 . . 9 . 12 . . 4 . . . 13 . 14 . 5 . 7 11 . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'767R:A 0 1 '0'768R:U 0 2 '0'769R:C 0 3 '0'892R:G 0 4 '0'893R:C 0 5 '0'894R:A 0 6 '0'895R:A 0 [Edges] 0 {'0'767R:A -> '0'768R:U: adjacent_5p } 0 1 {'0'768R:U -> '0'767R:A: adjacent_3p } 0 2 {'0'767R:A -> '0'895R:A: pairing antiparallel trans V Hh/Ww } 0 3 {'0'895R:A -> '0'767R:A: pairing antiparallel trans V Ww/Hh } 0 4 {'0'768R:U -> '0'769R:C: adjacent_5p upward } 0 5 {'0'769R:C -> '0'768R:U: adjacent_3p downward } 0 6 {'0'768R:U -> '0'893R:C: pairing parallel trans one_hbond 105 Wh/Wh } 0 7 {'0'893R:C -> '0'768R:U: pairing parallel trans one_hbond 105 Wh/Wh } 0 8 {'0'768R:U -> '0'895R:A: outward } 0 9 {'0'895R:A -> '0'768R:U: outward } 0 10 {'0'769R:C -> '0'892R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'892R:G -> '0'769R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'892R:G -> '0'893R:C: adjacent_5p inward } 0 13 {'0'893R:C -> '0'892R:G: adjacent_3p inward } 0 14 {'0'893R:C -> '0'894R:A: adjacent_5p } 0 15 {'0'894R:A -> '0'893R:C: adjacent_3p } 0 16 {'0'894R:A -> '0'895R:A: adjacent_5p } 0 17 {'0'895R:A -> '0'894R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . . . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 '0'787R:G 0 1 '0'788R:A 0 2 '0'789R:C 0 3 '0'856R:G 0 4 '0'857R:A 0 5 '0'858R:U 0 6 '0'859R:C 0 [Edges] 0 {'0'787R:G -> '0'788R:A: adjacent_5p upward } 0 1 {'0'788R:A -> '0'787R:G: adjacent_3p downward } 0 2 {'0'787R:G -> '0'859R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'859R:C -> '0'787R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'788R:A -> '0'789R:C: adjacent_5p upward } 0 5 {'0'789R:C -> '0'788R:A: adjacent_3p downward } 0 6 {'0'788R:A -> '0'858R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'858R:U -> '0'788R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'789R:C -> '0'856R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'856R:G -> '0'789R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'856R:G -> '0'857R:A: adjacent_5p } 0 11 {'0'857R:A -> '0'856R:G: adjacent_3p } 0 12 {'0'856R:G -> '0'858R:U: upward } 0 13 {'0'858R:U -> '0'856R:G: downward } 0 14 {'0'857R:A -> '0'858R:U: adjacent_5p } 0 15 {'0'858R:U -> '0'857R:A: adjacent_3p } 0 16 {'0'858R:U -> '0'859R:C: adjacent_5p } 0 17 {'0'859R:C -> '0'858R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'792R:G 0 1 '0'793R:A 0 2 '0'794R:U 0 3 '0'819R:A 0 4 '0'820R:G 0 5 '0'821R:U 0 6 '0'822R:C 0 [Edges] 0 {'0'792R:G -> '0'793R:A: adjacent_5p upward } 0 1 {'0'793R:A -> '0'792R:G: adjacent_3p downward } 0 2 {'0'792R:G -> '0'822R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'822R:C -> '0'792R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'793R:A -> '0'794R:U: adjacent_5p upward } 0 5 {'0'794R:U -> '0'793R:A: adjacent_3p downward } 0 6 {'0'793R:A -> '0'821R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'821R:U -> '0'793R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'793R:A -> '0'822R:C: outward } 0 9 {'0'822R:C -> '0'793R:A: outward } 0 10 {'0'794R:U -> '0'819R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'819R:A -> '0'794R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'819R:A -> '0'820R:G: adjacent_5p } 0 13 {'0'820R:G -> '0'819R:A: adjacent_3p } 0 14 {'0'819R:A -> '0'821R:U: upward } 0 15 {'0'821R:U -> '0'819R:A: downward } 0 16 {'0'820R:G -> '0'821R:U: adjacent_5p } 0 17 {'0'821R:U -> '0'820R:G: adjacent_3p } 0 18 {'0'821R:U -> '0'822R:C: adjacent_5p } 0 19 {'0'822R:C -> '0'821R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 14 . 4 . . . 13 . 16 . 5 . 7 . 15 17 . 18 6 3 9 . . . 19 . [GraphModel] [Vertices] 0 '0'793R:A 0 1 '0'794R:U 0 2 '0'795R:G 0 3 '0'818R:A 0 4 '0'819R:A 0 5 '0'820R:G 0 6 '0'821R:U 0 [Edges] 0 {'0'793R:A -> '0'794R:U: adjacent_5p upward } 0 1 {'0'794R:U -> '0'793R:A: adjacent_3p downward } 0 2 {'0'793R:A -> '0'821R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'821R:U -> '0'793R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'794R:U -> '0'795R:G: adjacent_5p upward } 0 5 {'0'795R:G -> '0'794R:U: adjacent_3p downward } 0 6 {'0'794R:U -> '0'819R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'819R:A -> '0'794R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'795R:G -> '0'818R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {'0'818R:A -> '0'795R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {'0'818R:A -> '0'819R:A: adjacent_5p upward } 0 11 {'0'819R:A -> '0'818R:A: adjacent_3p downward } 0 12 {'0'819R:A -> '0'820R:G: adjacent_5p } 0 13 {'0'820R:G -> '0'819R:A: adjacent_3p } 0 14 {'0'819R:A -> '0'821R:U: upward } 0 15 {'0'821R:U -> '0'819R:A: downward } 0 16 {'0'820R:G -> '0'821R:U: adjacent_5p } 0 17 {'0'821R:U -> '0'820R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . [GraphModel] [Vertices] 0 '0'846R:A 0 1 '0'847R:C 0 2 '0'848R:C 0 3 '0'834R:G 0 4 '0'835R:U 0 5 '0'836R:G 0 6 '0'837R:U 0 [Edges] 0 {'0'834R:G -> '0'835R:U: adjacent_5p } 0 1 {'0'835R:U -> '0'834R:G: adjacent_3p } 0 2 {'0'834R:G -> '0'836R:G: upward } 0 3 {'0'836R:G -> '0'834R:G: downward } 0 4 {'0'834R:G -> '0'848R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'848R:C -> '0'834R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'835R:U -> '0'836R:G: adjacent_5p } 0 7 {'0'836R:G -> '0'835R:U: adjacent_3p } 0 8 {'0'836R:G -> '0'837R:U: adjacent_5p upward } 0 9 {'0'837R:U -> '0'836R:G: adjacent_3p downward } 0 10 {'0'836R:G -> '0'847R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'847R:C -> '0'836R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'837R:U -> '0'846R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'846R:A -> '0'837R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'846R:A -> '0'847R:C: adjacent_5p upward } 0 15 {'0'847R:C -> '0'846R:A: adjacent_3p downward } 0 16 {'0'847R:C -> '0'848R:C: adjacent_5p upward } 0 17 {'0'848R:C -> '0'847R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . . 11 . 2 . 17 . 5 . . . 3 . . 4 . 0 2 . 4 . . . 1 . 6 . 5 . 10 . 3 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'847R:C 0 1 '0'848R:C 0 2 '0'849R:C 0 3 '0'833R:G 0 4 '0'834R:G 0 5 '0'835R:U 0 6 '0'836R:G 0 [Edges] 0 {'0'833R:G -> '0'834R:G: adjacent_5p upward } 0 1 {'0'834R:G -> '0'833R:G: adjacent_3p downward } 0 2 {'0'833R:G -> '0'849R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'849R:C -> '0'833R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'834R:G -> '0'835R:U: adjacent_5p } 0 5 {'0'835R:U -> '0'834R:G: adjacent_3p } 0 6 {'0'834R:G -> '0'836R:G: upward } 0 7 {'0'836R:G -> '0'834R:G: downward } 0 8 {'0'834R:G -> '0'848R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'848R:C -> '0'834R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'835R:U -> '0'836R:G: adjacent_5p } 0 11 {'0'836R:G -> '0'835R:U: adjacent_3p } 0 12 {'0'836R:G -> '0'847R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'847R:C -> '0'836R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'847R:C -> '0'848R:C: adjacent_5p upward } 0 15 {'0'848R:C -> '0'847R:C: adjacent_3p downward } 0 16 {'0'848R:C -> '0'849R:C: adjacent_5p upward } 0 17 {'0'849R:C -> '0'848R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 9 . . 2 . 17 . 3 . . . 3 . . 2 . 0 . . 4 . 8 . 1 . 4 6 5 . . . . 5 . 10 6 12 . . . 7 11 . [GraphModel] [Vertices] 0 '0'849R:C 0 1 '0'850R:U 0 2 '0'851R:C 0 3 '0'830R:G 0 4 '0'831R:U 0 5 '0'832R:U 0 6 '0'833R:G 0 [Edges] 0 {'0'830R:G -> '0'831R:U: adjacent_5p upward } 0 1 {'0'831R:U -> '0'830R:G: adjacent_3p downward } 0 2 {'0'830R:G -> '0'851R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'851R:C -> '0'830R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'831R:U -> '0'832R:U: adjacent_5p } 0 5 {'0'832R:U -> '0'831R:U: adjacent_3p } 0 6 {'0'832R:U -> '0'833R:G: adjacent_5p } 0 7 {'0'833R:G -> '0'832R:U: adjacent_3p } 0 8 {'0'832R:U -> '0'850R:U: pairing antiparallel cis XVI Ww/Ws } 0 9 {'0'850R:U -> '0'832R:U: pairing antiparallel cis XVI Ws/Ww } 0 10 {'0'833R:G -> '0'849R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'849R:C -> '0'833R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'849R:C -> '0'850R:U: adjacent_5p upward } 0 13 {'0'850R:U -> '0'849R:C: adjacent_3p downward } 0 14 {'0'850R:U -> '0'851R:C: adjacent_5p upward } 0 15 {'0'851R:C -> '0'850R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 '0'850R:U 0 1 '0'851R:C 0 2 '0'852R:U 0 3 '0'829R:A 0 4 '0'830R:G 0 5 '0'831R:U 0 6 '0'832R:U 0 [Edges] 0 {'0'829R:A -> '0'830R:G: adjacent_5p upward } 0 1 {'0'830R:G -> '0'829R:A: adjacent_3p downward } 0 2 {'0'829R:A -> '0'852R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'852R:U -> '0'829R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'830R:G -> '0'831R:U: adjacent_5p upward } 0 5 {'0'831R:U -> '0'830R:G: adjacent_3p downward } 0 6 {'0'830R:G -> '0'851R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'851R:C -> '0'830R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'830R:G -> '0'852R:U: outward } 0 9 {'0'852R:U -> '0'830R:G: outward } 0 10 {'0'831R:U -> '0'832R:U: adjacent_5p } 0 11 {'0'832R:U -> '0'831R:U: adjacent_3p } 0 12 {'0'832R:U -> '0'850R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {'0'850R:U -> '0'832R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {'0'850R:U -> '0'851R:C: adjacent_5p upward } 0 15 {'0'851R:C -> '0'850R:U: adjacent_3p downward } 0 16 {'0'851R:C -> '0'852R:U: adjacent_5p } 0 17 {'0'852R:U -> '0'851R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 . . 2 . 17 . 3 9 . . 3 . . 2 . 0 . . 4 . 6 8 1 . 4 . 5 . . . . 5 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 '0'871R:G 0 1 '0'872R:U 0 2 '0'873R:G 0 3 '0'876R:A 0 4 '0'877R:G 0 5 '0'878R:G 0 6 '0'879R:C 0 [Edges] 0 {'0'871R:G -> '0'872R:U: adjacent_5p upward } 0 1 {'0'872R:U -> '0'871R:G: adjacent_3p downward } 0 2 {'0'871R:G -> '0'879R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'879R:C -> '0'871R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'872R:U -> '0'873R:G: adjacent_5p upward } 0 5 {'0'873R:G -> '0'872R:U: adjacent_3p downward } 0 6 {'0'872R:U -> '0'878R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'878R:G -> '0'872R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'873R:G -> '0'876R:A: pairing parallel trans X Ss/Ww } 0 9 {'0'876R:A -> '0'873R:G: pairing parallel trans X Ww/Ss } 0 10 {'0'876R:A -> '0'877R:G: adjacent_5p } 0 11 {'0'877R:G -> '0'876R:A: adjacent_3p } 0 12 {'0'876R:A -> '0'878R:G: outward } 0 13 {'0'878R:G -> '0'876R:A: outward } 0 14 {'0'877R:G -> '0'878R:G: adjacent_5p } 0 15 {'0'878R:G -> '0'877R:G: adjacent_3p } 0 16 {'0'878R:G -> '0'879R:C: adjacent_5p upward } 0 17 {'0'879R:C -> '0'878R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'943R:A 0 1 '0'944R:G 0 2 '0'945R:U 0 3 '0'1022R:A 0 4 '0'1023R:C 0 5 '0'1024R:G 0 6 '0'1025R:C 0 [Edges] 0 {'0'943R:A -> '0'944R:G: adjacent_5p } 0 1 {'0'944R:G -> '0'943R:A: adjacent_3p } 0 2 {'0'943R:A -> '0'1025R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {'0'1025R:C -> '0'943R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {'0'944R:G -> '0'945R:U: adjacent_5p upward } 0 5 {'0'945R:U -> '0'944R:G: adjacent_3p downward } 0 6 {'0'944R:G -> '0'1023R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1023R:C -> '0'944R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'945R:U -> '0'1022R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'1022R:A -> '0'945R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'1022R:A -> '0'1023R:C: adjacent_5p upward } 0 11 {'0'1023R:C -> '0'1022R:A: adjacent_3p downward } 0 12 {'0'1023R:C -> '0'1024R:G: adjacent_5p upward } 0 13 {'0'1024R:G -> '0'1023R:C: adjacent_3p downward } 0 14 {'0'1024R:G -> '0'1025R:C: adjacent_5p upward } 0 15 {'0'1025R:C -> '0'1024R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'955R:A 0 1 '0'956R:G 0 2 '0'957R:A 0 3 '0'1009R:U 0 4 '0'1010R:C 0 5 '0'1011R:C 0 6 '0'1012R:A 0 [Edges] 0 {'0'955R:A -> '0'956R:G: adjacent_5p upward } 0 1 {'0'956R:G -> '0'955R:A: adjacent_3p downward } 0 2 {'0'955R:A -> '0'1012R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 3 {'0'1012R:A -> '0'955R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 4 {'0'956R:G -> '0'957R:A: adjacent_5p upward } 0 5 {'0'957R:A -> '0'956R:G: adjacent_3p downward } 0 6 {'0'956R:G -> '0'1011R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1011R:C -> '0'956R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'957R:A -> '0'1009R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'1009R:U -> '0'957R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'1009R:U -> '0'1010R:C: adjacent_5p pairing parallel cis 99 Bs/Hh } 0 11 {'0'1010R:C -> '0'1009R:U: adjacent_3p pairing parallel cis 99 Hh/Bs } 0 12 {'0'1010R:C -> '0'1011R:C: adjacent_5p } 0 13 {'0'1011R:C -> '0'1010R:C: adjacent_3p } 0 14 {'0'1011R:C -> '0'1012R:A: adjacent_5p upward } 0 15 {'0'1012R:A -> '0'1011R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'956R:G 0 1 '0'957R:A 0 2 '0'958R:G 0 3 '0'1008R:C 0 4 '0'1009R:U 0 5 '0'1010R:C 0 6 '0'1011R:C 0 [Edges] 0 {'0'956R:G -> '0'957R:A: adjacent_5p upward } 0 1 {'0'957R:A -> '0'956R:G: adjacent_3p downward } 0 2 {'0'956R:G -> '0'1011R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1011R:C -> '0'956R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'957R:A -> '0'958R:G: adjacent_5p upward } 0 5 {'0'958R:G -> '0'957R:A: adjacent_3p downward } 0 6 {'0'957R:A -> '0'1009R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1009R:U -> '0'957R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'958R:G -> '0'1008R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1008R:C -> '0'958R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'1008R:C -> '0'1009R:U: adjacent_5p upward } 0 11 {'0'1009R:U -> '0'1008R:C: adjacent_3p downward } 0 12 {'0'1009R:U -> '0'1010R:C: adjacent_5p pairing parallel cis 99 Bs/Hh } 0 13 {'0'1010R:C -> '0'1009R:U: adjacent_3p pairing parallel cis 99 Hh/Bs } 0 14 {'0'1010R:C -> '0'1011R:C: adjacent_5p } 0 15 {'0'1011R:C -> '0'1010R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'1022R:A 0 1 '0'1023R:C 0 2 '0'1024R:G 0 3 '0'942R:U 0 4 '0'943R:A 0 5 '0'944R:G 0 6 '0'945R:U 0 [Edges] 0 {'0'942R:U -> '0'943R:A: adjacent_5p } 0 1 {'0'943R:A -> '0'942R:U: adjacent_3p } 0 2 {'0'942R:U -> '0'1024R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1024R:G -> '0'942R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'943R:A -> '0'944R:G: adjacent_5p } 0 5 {'0'944R:G -> '0'943R:A: adjacent_3p } 0 6 {'0'944R:G -> '0'945R:U: adjacent_5p upward } 0 7 {'0'945R:U -> '0'944R:G: adjacent_3p downward } 0 8 {'0'944R:G -> '0'1023R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1023R:C -> '0'944R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'945R:U -> '0'1022R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1022R:A -> '0'945R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1022R:A -> '0'1023R:C: adjacent_5p upward } 0 13 {'0'1023R:C -> '0'1022R:A: adjacent_3p downward } 0 14 {'0'1023R:C -> '0'1024R:G: adjacent_5p upward } 0 15 {'0'1024R:G -> '0'1023R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 '0'1023R:C 0 1 '0'1024R:G 0 2 '0'1025R:C 0 3 '0'941R:G 0 4 '0'942R:U 0 5 '0'943R:A 0 6 '0'944R:G 0 [Edges] 0 {'0'941R:G -> '0'942R:U: adjacent_5p upward } 0 1 {'0'942R:U -> '0'941R:G: adjacent_3p downward } 0 2 {'0'941R:G -> '0'1025R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1025R:C -> '0'941R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'942R:U -> '0'943R:A: adjacent_5p } 0 5 {'0'943R:A -> '0'942R:U: adjacent_3p } 0 6 {'0'942R:U -> '0'1024R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1024R:G -> '0'942R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'943R:A -> '0'944R:G: adjacent_5p } 0 9 {'0'944R:G -> '0'943R:A: adjacent_3p } 0 10 {'0'943R:A -> '0'1025R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 11 {'0'1025R:C -> '0'943R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 12 {'0'944R:G -> '0'1023R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1023R:C -> '0'944R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1023R:C -> '0'1024R:G: adjacent_5p upward } 0 15 {'0'1024R:G -> '0'1023R:C: adjacent_3p downward } 0 16 {'0'1024R:G -> '0'1025R:C: adjacent_5p upward } 0 17 {'0'1025R:C -> '0'1024R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 16 . 7 . . 2 . 17 . 3 . 11 . 3 . . 2 . 0 . . 4 . 6 . 1 . 4 . 5 . . 10 . 5 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 '0'1041R:U 0 1 '0'1042R:U 0 2 '0'1043R:C 0 3 '0'926R:A 0 4 '0'927R:U 0 5 '0'928R:G 0 6 '0'929R:A 0 [Edges] 0 {'0'926R:A -> '0'927R:U: adjacent_5p upward } 0 1 {'0'927R:U -> '0'926R:A: adjacent_3p downward } 0 2 {'0'926R:A -> '0'1043R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {'0'1043R:C -> '0'926R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {'0'927R:U -> '0'928R:G: adjacent_5p upward } 0 5 {'0'928R:G -> '0'927R:U: adjacent_3p downward } 0 6 {'0'928R:G -> '0'929R:A: adjacent_5p upward } 0 7 {'0'929R:A -> '0'928R:G: adjacent_3p downward } 0 8 {'0'929R:A -> '0'1041R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {'0'1041R:U -> '0'929R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {'0'1041R:U -> '0'1042R:U: adjacent_5p upward } 0 11 {'0'1042R:U -> '0'1041R:U: adjacent_3p downward } 0 12 {'0'1042R:U -> '0'1043R:C: adjacent_5p } 0 13 {'0'1043R:C -> '0'1042R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 10 . . . . 9 1 11 . 12 . . . . 2 . 13 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . . . . 5 . 6 6 8 . . . . 7 . [GraphModel] [Vertices] 0 '0'1053R:G 0 1 '0'1054R:G 0 2 '0'1055R:G 0 3 '0'1058R:A 0 4 '0'1059R:G 0 5 '0'1060R:C 0 6 '0'1061R:C 0 [Edges] 0 {'0'1053R:G -> '0'1054R:G: adjacent_5p upward } 0 1 {'0'1054R:G -> '0'1053R:G: adjacent_3p downward } 0 2 {'0'1053R:G -> '0'1061R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1061R:C -> '0'1053R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1054R:G -> '0'1055R:G: adjacent_5p upward } 0 5 {'0'1055R:G -> '0'1054R:G: adjacent_3p downward } 0 6 {'0'1054R:G -> '0'1060R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1060R:C -> '0'1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1055R:G -> '0'1058R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 9 {'0'1058R:A -> '0'1055R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 10 {'0'1058R:A -> '0'1059R:G: adjacent_5p } 0 11 {'0'1059R:G -> '0'1058R:A: adjacent_3p } 0 12 {'0'1058R:A -> '0'1060R:C: upward } 0 13 {'0'1060R:C -> '0'1058R:A: downward } 0 14 {'0'1059R:G -> '0'1060R:C: adjacent_5p } 0 15 {'0'1060R:C -> '0'1059R:G: adjacent_3p } 0 16 {'0'1060R:C -> '0'1061R:C: adjacent_5p } 0 17 {'0'1061R:C -> '0'1060R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'1072R:G 0 1 '0'1073R:A 0 2 '0'1074R:G 0 3 '0'1085R:C 0 4 '0'1086R:A 0 5 '0'1087R:G 0 6 '0'1088R:A 0 [Edges] 0 {'0'1072R:G -> '0'1073R:A: adjacent_5p } 0 1 {'0'1073R:A -> '0'1072R:G: adjacent_3p } 0 2 {'0'1072R:G -> '0'1087R:G: inward } 0 3 {'0'1087R:G -> '0'1072R:G: inward } 0 4 {'0'1072R:G -> '0'1088R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'1088R:A -> '0'1072R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'1073R:A -> '0'1074R:G: adjacent_5p upward } 0 7 {'0'1074R:G -> '0'1073R:A: adjacent_3p downward } 0 8 {'0'1073R:A -> '0'1087R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 9 {'0'1087R:G -> '0'1073R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 10 {'0'1073R:A -> '0'1088R:A: outward } 0 11 {'0'1088R:A -> '0'1073R:A: outward } 0 12 {'0'1074R:G -> '0'1085R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1085R:C -> '0'1074R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1085R:C -> '0'1086R:A: adjacent_5p upward } 0 15 {'0'1086R:A -> '0'1085R:C: adjacent_3p downward } 0 16 {'0'1086R:A -> '0'1087R:G: adjacent_5p } 0 17 {'0'1087R:G -> '0'1086R:A: adjacent_3p } 0 18 {'0'1087R:G -> '0'1088R:A: adjacent_5p } 0 19 {'0'1088R:A -> '0'1087R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . 2 4 1 1 . 6 . . 8 10 2 . 7 . 12 . . . 3 . . 13 . 14 . . 4 . . . 15 . 16 . 5 3 9 . . 17 . 18 6 5 11 . . . 19 . [GraphModel] [Vertices] 0 '0'1073R:A 0 1 '0'1074R:G 0 2 '0'1075R:G 0 3 '0'1084R:C 0 4 '0'1085R:C 0 5 '0'1086R:A 0 6 '0'1087R:G 0 [Edges] 0 {'0'1073R:A -> '0'1074R:G: adjacent_5p upward } 0 1 {'0'1074R:G -> '0'1073R:A: adjacent_3p downward } 0 2 {'0'1073R:A -> '0'1087R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'1087R:G -> '0'1073R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'1074R:G -> '0'1075R:G: adjacent_5p upward } 0 5 {'0'1075R:G -> '0'1074R:G: adjacent_3p downward } 0 6 {'0'1074R:G -> '0'1085R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1085R:C -> '0'1074R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1075R:G -> '0'1084R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1084R:C -> '0'1075R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'1084R:C -> '0'1085R:C: adjacent_5p upward } 0 11 {'0'1085R:C -> '0'1084R:C: adjacent_3p downward } 0 12 {'0'1085R:C -> '0'1086R:A: adjacent_5p upward } 0 13 {'0'1086R:A -> '0'1085R:C: adjacent_3p downward } 0 14 {'0'1086R:A -> '0'1087R:G: adjacent_5p } 0 15 {'0'1087R:G -> '0'1086R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 '0'1094R:G 0 1 '0'1095R:U 0 2 '0'1096R:U 0 3 '0'1259R:A 0 4 '0'1260R:G 0 5 '0'1261R:A 0 6 '0'1262R:C 0 [Edges] 0 {'0'1094R:G -> '0'1095R:U: adjacent_5p upward } 0 1 {'0'1095R:U -> '0'1094R:G: adjacent_3p downward } 0 2 {'0'1094R:G -> '0'1262R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1262R:C -> '0'1094R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1095R:U -> '0'1096R:U: adjacent_5p upward } 0 5 {'0'1096R:U -> '0'1095R:U: adjacent_3p downward } 0 6 {'0'1095R:U -> '0'1261R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1261R:A -> '0'1095R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1096R:U -> '0'1259R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {'0'1259R:A -> '0'1096R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {'0'1259R:A -> '0'1260R:G: adjacent_5p } 0 11 {'0'1260R:G -> '0'1259R:A: adjacent_3p } 0 12 {'0'1259R:A -> '0'1261R:A: upward } 0 13 {'0'1261R:A -> '0'1259R:A: downward } 0 14 {'0'1260R:G -> '0'1261R:A: adjacent_5p } 0 15 {'0'1261R:A -> '0'1260R:G: adjacent_3p } 0 16 {'0'1261R:A -> '0'1262R:C: adjacent_5p upward } 0 17 {'0'1262R:C -> '0'1261R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'1114R:A 0 1 '0'1115R:U 0 2 '0'1116R:U 0 3 '0'1246R:A 0 4 '0'1247R:A 0 5 '0'1248R:A 0 6 '0'1249R:U 0 [Edges] 0 {'0'1114R:A -> '0'1115R:U: adjacent_5p upward } 0 1 {'0'1115R:U -> '0'1114R:A: adjacent_3p downward } 0 2 {'0'1114R:A -> '0'1249R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1249R:U -> '0'1114R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1115R:U -> '0'1116R:U: adjacent_5p } 0 5 {'0'1116R:U -> '0'1115R:U: adjacent_3p } 0 6 {'0'1115R:U -> '0'1248R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1248R:A -> '0'1115R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1116R:U -> '0'1246R:A: pairing antiparallel trans one_hbond 46 Ws/Bh } 0 9 {'0'1246R:A -> '0'1116R:U: pairing antiparallel trans one_hbond 46 Bh/Ws } 0 10 {'0'1246R:A -> '0'1247R:A: adjacent_5p } 0 11 {'0'1247R:A -> '0'1246R:A: adjacent_3p } 0 12 {'0'1246R:A -> '0'1248R:A: upward } 0 13 {'0'1248R:A -> '0'1246R:A: downward } 0 14 {'0'1247R:A -> '0'1248R:A: adjacent_5p } 0 15 {'0'1248R:A -> '0'1247R:A: adjacent_3p } 0 16 {'0'1248R:A -> '0'1249R:U: adjacent_5p upward } 0 17 {'0'1249R:U -> '0'1248R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 12 . 4 . . . 11 . 14 . 5 . 7 . 13 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 '0'1152R:A 0 1 '0'1153R:C 0 2 '0'1154R:A 0 3 '0'1213R:C 0 4 '0'1214R:G 0 5 '0'1215R:A 0 6 '0'1216R:G 0 [Edges] 0 {'0'1152R:A -> '0'1153R:C: adjacent_5p upward } 0 1 {'0'1153R:C -> '0'1152R:A: adjacent_3p downward } 0 2 {'0'1152R:A -> '0'1214R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'1214R:G -> '0'1152R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'1152R:A -> '0'1215R:A: outward } 0 5 {'0'1215R:A -> '0'1152R:A: outward } 0 6 {'0'1152R:A -> '0'1216R:G: pairing parallel trans 57 Ss/Ss } 0 7 {'0'1216R:G -> '0'1152R:A: pairing parallel trans 57 Ss/Ss } 0 8 {'0'1153R:C -> '0'1154R:A: adjacent_5p upward } 0 9 {'0'1154R:A -> '0'1153R:C: adjacent_3p downward } 0 10 {'0'1154R:A -> '0'1213R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 11 {'0'1213R:C -> '0'1154R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 12 {'0'1213R:C -> '0'1214R:G: adjacent_5p upward } 0 13 {'0'1214R:G -> '0'1213R:C: adjacent_3p downward } 0 14 {'0'1214R:G -> '0'1215R:A: adjacent_5p } 0 15 {'0'1215R:A -> '0'1214R:G: adjacent_3p } 0 16 {'0'1215R:A -> '0'1216R:G: adjacent_5p } 0 17 {'0'1216R:G -> '0'1215R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 4 6 1 1 . 8 . . . . 2 . 9 . 10 . . . 3 . . 11 . 12 . . 4 3 . . 13 . 14 . 5 5 . . . 15 . 16 6 7 . . . . 17 . [GraphModel] [Vertices] 0 '0'1212R:C 0 1 '0'1213R:C 0 2 '0'1214R:G 0 3 '0'1152R:A 0 4 '0'1153R:C 0 5 '0'1154R:A 0 6 '0'1155R:G 0 [Edges] 0 {'0'1152R:A -> '0'1153R:C: adjacent_5p upward } 0 1 {'0'1153R:C -> '0'1152R:A: adjacent_3p downward } 0 2 {'0'1152R:A -> '0'1214R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'1214R:G -> '0'1152R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'1153R:C -> '0'1154R:A: adjacent_5p upward } 0 5 {'0'1154R:A -> '0'1153R:C: adjacent_3p downward } 0 6 {'0'1154R:A -> '0'1155R:G: adjacent_5p upward } 0 7 {'0'1155R:G -> '0'1154R:A: adjacent_3p downward } 0 8 {'0'1154R:A -> '0'1213R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 9 {'0'1213R:C -> '0'1154R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 10 {'0'1155R:G -> '0'1212R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1212R:C -> '0'1155R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1212R:C -> '0'1213R:C: adjacent_5p upward } 0 13 {'0'1213R:C -> '0'1212R:C: adjacent_3p downward } 0 14 {'0'1213R:C -> '0'1214R:G: adjacent_5p upward } 0 15 {'0'1214R:G -> '0'1213R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 14 . . 9 . 2 . 15 . 3 . . . 3 . . 2 . 0 . . 4 . . . 1 . 4 . 5 . 8 . . 5 . 6 6 10 . . . . 7 . [GraphModel] [Vertices] 0 '0'1213R:C 0 1 '0'1214R