MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 B21R:A 0 4 B22R:G 0 5 B23R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B21R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {B21R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {B21R:A -> B22R:G: adjacent_5p upward } 0 11 {B22R:G -> B21R:A: adjacent_3p downward } 0 12 {B22R:G -> B23R:C: adjacent_5p upward } 0 13 {B23R:C -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 B20R:U 0 4 B21R:A 0 5 B22R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B21R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B21R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B20R:U -> B21R:A: adjacent_5p upward } 0 11 {B21R:A -> B20R:U: adjacent_3p downward } 0 12 {B21R:A -> B22R:G: adjacent_5p upward } 0 13 {B22R:G -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:A 0 3 B19R:U 0 4 B20R:U 0 5 B21R:A 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B21R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B21R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B19R:U -> B20R:U: adjacent_5p upward } 0 11 {B20R:U -> B19R:U: adjacent_3p downward } 0 12 {B20R:U -> B21R:A: adjacent_5p upward } 0 13 {B21R:A -> B20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:U 0 3 B18R:A 0 4 B19R:U 0 5 B20R:U 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B18R:A -> B19R:U: adjacent_5p upward } 0 11 {B19R:U -> B18R:A: adjacent_3p downward } 0 12 {B19R:U -> B20R:U: adjacent_5p upward } 0 13 {B20R:U -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:U 0 2 A8R:U 0 3 B17R:A 0 4 B18R:A 0 5 B19R:U 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B17R:A -> B18R:A: adjacent_5p upward } 0 11 {B18R:A -> B17R:A: adjacent_3p downward } 0 12 {B18R:A -> B19R:U: adjacent_5p upward } 0 13 {B19R:U -> B18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:A 0 3 B16R:G 0 4 B17R:A 0 5 B18R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B16R:G: pairing antiparallel cis VIII Ww/Ww } 0 9 {B16R:G -> A9R:A: pairing antiparallel cis VIII Ww/Ww } 0 10 {B16R:G -> B17R:A: adjacent_5p upward } 0 11 {B17R:A -> B16R:G: adjacent_3p downward } 0 12 {B17R:A -> B18R:A: adjacent_5p upward } 0 13 {B18R:A -> B17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:A 0 2 A10R:G 0 3 B15R:C 0 4 B16R:G 0 5 B17R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:A -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B16R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B16R:G -> A9R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B15R:C -> B16R:G: adjacent_5p upward } 0 11 {B16R:G -> B15R:C: adjacent_3p downward } 0 12 {B16R:G -> B17R:A: adjacent_5p upward } 0 13 {B17R:A -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:G 0 2 A11R:C 0 3 B14R:G 0 4 B15R:C 0 5 B16R:G 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B16R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B16R:G -> A9R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B14R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B14R:G -> B15R:C: adjacent_5p upward } 0 11 {B15R:C -> B14R:G: adjacent_3p downward } 0 12 {B15R:C -> B16R:G: adjacent_5p upward } 0 13 {B16R:G -> B15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 18R:U 0 4 19R:G 0 5 20R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p } 0 1 {3R:C -> 2R:G: adjacent_3p } 0 2 {2R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p } 0 5 {4R:G -> 3R:C: adjacent_3p } 0 6 {3R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {19R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {18R:U -> 4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {4R:G -> 19R:G: outward } 0 11 {19R:G -> 4R:G: outward } 0 12 {18R:U -> 19R:G: adjacent_5p } 0 13 {19R:G -> 18R:U: adjacent_3p } 0 14 {19R:G -> 20R:C: adjacent_5p upward } 0 15 {20R:C -> 19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:G 0 2 5R:U 0 3 17R:A 0 4 18R:U 0 5 19R:G 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p } 0 1 {4R:G -> 3R:C: adjacent_3p } 0 2 {3R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {19R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 5R:U: adjacent_5p upward } 0 5 {5R:U -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {18R:U -> 4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {4R:G -> 19R:G: outward } 0 9 {19R:G -> 4R:G: outward } 0 10 {5R:U -> 17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {17R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {17R:A -> 18R:U: adjacent_5p upward } 0 13 {18R:U -> 17R:A: adjacent_3p downward } 0 14 {18R:U -> 19R:G: adjacent_5p } 0 15 {19R:G -> 18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 B1R:A 0 1 B2R:A 0 2 B3R:A 0 3 C7R:U 0 4 C8R:U 0 5 C9R:U 0 [Edges] 0 {B1R:A -> B2R:A: adjacent_5p upward } 0 1 {B2R:A -> B1R:A: adjacent_3p downward } 0 2 {B1R:A -> C9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C9R:U -> B1R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B2R:A -> B3R:A: adjacent_5p upward } 0 5 {B3R:A -> B2R:A: adjacent_3p downward } 0 6 {B3R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C7R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C7R:U -> C8R:U: adjacent_5p upward } 0 9 {C8R:U -> C7R:U: adjacent_3p downward } 0 10 {C8R:U -> C9R:U: adjacent_5p } 0 11 {C9R:U -> C8R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:A 0 2 B5R:A 0 3 C5R:U 0 4 C6R:U 0 5 C7R:U 0 [Edges] 0 {B3R:A -> B4R:A: adjacent_5p upward } 0 1 {B4R:A -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C7R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:A -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:A: adjacent_3p downward } 0 6 {B4R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C6R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C5R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C5R:U -> C6R:U: adjacent_5p upward } 0 11 {C6R:U -> C5R:U: adjacent_3p downward } 0 12 {C6R:U -> C7R:U: adjacent_5p upward } 0 13 {C7R:U -> C6R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B4R:A 0 1 B5R:A 0 2 B6R:A 0 3 C4R:U 0 4 C5R:U 0 5 C6R:U 0 [Edges] 0 {B4R:A -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:A: adjacent_3p downward } 0 2 {B4R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C6R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B5R:A -> B6R:A: adjacent_5p upward } 0 5 {B6R:A -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C5R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C4R:U -> C5R:U: adjacent_5p upward } 0 11 {C5R:U -> C4R:U: adjacent_3p downward } 0 12 {C5R:U -> C6R:U: adjacent_5p upward } 0 13 {C6R:U -> C5R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B5R:A 0 1 B6R:A 0 2 B7R:A 0 3 C3R:U 0 4 C4R:U 0 5 C5R:U 0 [Edges] 0 {B5R:A -> B6R:A: adjacent_5p upward } 0 1 {B6R:A -> B5R:A: adjacent_3p downward } 0 2 {B5R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C5R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B6R:A -> B7R:A: adjacent_5p upward } 0 5 {B7R:A -> B6R:A: adjacent_3p downward } 0 6 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B7R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C3R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C3R:U -> C4R:U: adjacent_5p } 0 11 {C4R:U -> C3R:U: adjacent_3p } 0 12 {C4R:U -> C5R:U: adjacent_5p upward } 0 13 {C5R:U -> C4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B6R:A 0 1 B7R:A 0 2 B8R:A 0 3 C2R:U 0 4 C3R:U 0 5 C4R:U 0 [Edges] 0 {B6R:A -> B7R:A: adjacent_5p upward } 0 1 {B7R:A -> B6R:A: adjacent_3p downward } 0 2 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B7R:A -> B8R:A: adjacent_5p upward } 0 5 {B8R:A -> B7R:A: adjacent_3p downward } 0 6 {B7R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C3R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B8R:A -> C2R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C2R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C2R:U -> C3R:U: adjacent_5p } 0 11 {C3R:U -> C2R:U: adjacent_3p } 0 12 {C3R:U -> C4R:U: adjacent_5p } 0 13 {C4R:U -> C3R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B7R:A 0 1 B8R:A 0 2 B9R:A 0 3 C1R:U 0 4 C2R:U 0 5 C3R:U 0 [Edges] 0 {B7R:A -> B8R:A: adjacent_5p upward } 0 1 {B8R:A -> B7R:A: adjacent_3p downward } 0 2 {B7R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C3R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B8R:A -> B9R:A: adjacent_5p upward } 0 5 {B9R:A -> B8R:A: adjacent_3p downward } 0 6 {B8R:A -> C2R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C2R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B9R:A -> C1R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C1R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C1R:U -> C2R:U: adjacent_5p upward } 0 11 {C2R:U -> C1R:U: adjacent_3p downward } 0 12 {C2R:U -> C3R:U: adjacent_5p } 0 13 {C3R:U -> C2R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:G 0 2 A7R:C 0 3 A15R:G 0 4 A16R:C 0 5 A17R:G 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A17R:G: outward } 0 9 {A17R:G -> A6R:G: outward } 0 10 {A7R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A16R:C: adjacent_5p upward } 0 13 {A16R:C -> A15R:G: adjacent_3p downward } 0 14 {A16R:C -> A17R:G: adjacent_5p } 0 15 {A17R:G -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:C 0 2 A8R:U 0 3 A14R:A 0 4 A15R:G 0 5 A16R:C 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A14R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A14R:A -> A15R:G: adjacent_5p upward } 0 11 {A15R:G -> A14R:A: adjacent_3p downward } 0 12 {A15R:G -> A16R:C: adjacent_5p upward } 0 13 {A16R:C -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:G 0 3 A13R:A 0 4 A14R:A 0 5 A15R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A14R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A13R:A: pairing antiparallel trans one_hbond Bs/Hh } 0 9 {A13R:A -> A9R:G: pairing antiparallel trans one_hbond Hh/Bs } 0 10 {A13R:A -> A14R:A: adjacent_5p upward } 0 11 {A14R:A -> A13R:A: adjacent_3p downward } 0 12 {A14R:A -> A15R:G: adjacent_5p upward } 0 13 {A15R:G -> A14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 69R:G 0 1 70R:C 0 2 71R:C 0 3 105R:G 0 4 106R:G 0 5 107R:C 0 [Edges] 0 {69R:G -> 70R:C: adjacent_5p upward } 0 1 {70R:C -> 69R:G: adjacent_3p downward } 0 2 {69R:G -> 107R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {107R:C -> 69R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {70R:C -> 71R:C: adjacent_5p } 0 5 {71R:C -> 70R:C: adjacent_3p } 0 6 {70R:C -> 106R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {106R:G -> 70R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {71R:C -> 105R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {105R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {105R:G -> 106R:G: adjacent_5p upward } 0 11 {106R:G -> 105R:G: adjacent_3p downward } 0 12 {106R:G -> 107R:C: adjacent_5p upward } 0 13 {107R:C -> 106R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 70R:C 0 1 71R:C 0 2 72R:G 0 3 104R:A 0 4 105R:G 0 5 106R:G 0 [Edges] 0 {70R:C -> 71R:C: adjacent_5p } 0 1 {71R:C -> 70R:C: adjacent_3p } 0 2 {70R:C -> 106R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {106R:G -> 70R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {71R:C -> 72R:G: adjacent_5p upward } 0 5 {72R:G -> 71R:C: adjacent_3p downward } 0 6 {71R:C -> 105R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {105R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {104R:A -> 105R:G: adjacent_5p upward } 0 11 {105R:G -> 104R:A: adjacent_3p downward } 0 12 {105R:G -> 106R:G: adjacent_5p upward } 0 13 {106R:G -> 105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 71R:C 0 1 72R:G 0 2 73R:A 0 3 103R:U 0 4 104R:A 0 5 105R:G 0 [Edges] 0 {71R:C -> 72R:G: adjacent_5p upward } 0 1 {72R:G -> 71R:C: adjacent_3p downward } 0 2 {71R:C -> 105R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {105R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {72R:G -> 73R:A: adjacent_5p } 0 5 {73R:A -> 72R:G: adjacent_3p } 0 6 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 9 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 10 {73R:A -> 104R:A: outward } 0 11 {104R:A -> 73R:A: outward } 0 12 {103R:U -> 104R:A: adjacent_5p upward } 0 13 {104R:A -> 103R:U: adjacent_3p downward } 0 14 {104R:A -> 105R:G: adjacent_5p upward } 0 15 {105R:G -> 104R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 72R:G 0 1 73R:A 0 2 74R:U 0 3 102R:G 0 4 103R:U 0 5 104R:A 0 [Edges] 0 {72R:G -> 73R:A: adjacent_5p } 0 1 {73R:A -> 72R:G: adjacent_3p } 0 2 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {73R:A -> 74R:U: adjacent_5p upward } 0 5 {74R:U -> 73R:A: adjacent_3p downward } 0 6 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {73R:A -> 104R:A: outward } 0 9 {104R:A -> 73R:A: outward } 0 10 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 11 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 12 {102R:G -> 103R:U: adjacent_5p upward } 0 13 {103R:U -> 102R:G: adjacent_3p downward } 0 14 {103R:U -> 104R:A: adjacent_5p upward } 0 15 {104R:A -> 103R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 73R:A 0 1 74R:U 0 2 75R:G 0 3 101R:A 0 4 102R:G 0 5 103R:U 0 [Edges] 0 {73R:A -> 74R:U: adjacent_5p upward } 0 1 {74R:U -> 73R:A: adjacent_3p downward } 0 2 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {74R:U -> 75R:G: adjacent_5p upward } 0 5 {75R:G -> 74R:U: adjacent_3p downward } 0 6 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 7 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 8 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 9 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 10 {101R:A -> 102R:G: adjacent_5p upward } 0 11 {102R:G -> 101R:A: adjacent_3p downward } 0 12 {102R:G -> 103R:U: adjacent_5p upward } 0 13 {103R:U -> 102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 74R:U 0 1 75R:G 0 2 76R:G 0 3 100R:G 0 4 101R:A 0 5 102R:G 0 [Edges] 0 {74R:U -> 75R:G: adjacent_5p upward } 0 1 {75R:G -> 74R:U: adjacent_3p downward } 0 2 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 3 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 4 {75R:G -> 76R:G: adjacent_5p upward } 0 5 {76R:G -> 75R:G: adjacent_3p downward } 0 6 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 7 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 8 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 9 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 10 {100R:G -> 101R:A: adjacent_5p upward } 0 11 {101R:A -> 100R:G: adjacent_3p downward } 0 12 {101R:A -> 102R:G: adjacent_5p upward } 0 13 {102R:G -> 101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 75R:G 0 1 76R:G 0 2 77R:U 0 3 99R:A 0 4 100R:G 0 5 101R:A 0 [Edges] 0 {75R:G -> 76R:G: adjacent_5p upward } 0 1 {76R:G -> 75R:G: adjacent_3p downward } 0 2 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 3 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 4 {76R:G -> 77R:U: adjacent_5p upward } 0 5 {77R:U -> 76R:G: adjacent_3p downward } 0 6 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {99R:A -> 100R:G: adjacent_5p upward } 0 11 {100R:G -> 99R:A: adjacent_3p downward } 0 12 {100R:G -> 101R:A: adjacent_5p upward } 0 13 {101R:A -> 100R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 76R:G 0 1 77R:U 0 2 78R:A 0 3 98R:G 0 4 99R:A 0 5 100R:G 0 [Edges] 0 {76R:G -> 77R:U: adjacent_5p upward } 0 1 {77R:U -> 76R:G: adjacent_3p downward } 0 2 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {77R:U -> 78R:A: adjacent_5p upward } 0 5 {78R:A -> 77R:U: adjacent_3p downward } 0 6 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {78R:A -> 99R:A: outward } 0 11 {99R:A -> 78R:A: outward } 0 12 {98R:G -> 99R:A: adjacent_5p } 0 13 {99R:A -> 98R:G: adjacent_3p } 0 14 {99R:A -> 100R:G: adjacent_5p upward } 0 15 {100R:G -> 99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 77R:U 0 1 78R:A 0 2 79R:G 0 3 97R:C 0 4 98R:G 0 5 99R:A 0 [Edges] 0 {77R:U -> 78R:A: adjacent_5p upward } 0 1 {78R:A -> 77R:U: adjacent_3p downward } 0 2 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {78R:A -> 79R:G: adjacent_5p upward } 0 5 {79R:G -> 78R:A: adjacent_3p downward } 0 6 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {78R:A -> 99R:A: outward } 0 9 {99R:A -> 78R:A: outward } 0 10 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {97R:C -> 98R:G: adjacent_5p upward } 0 13 {98R:G -> 97R:C: adjacent_3p downward } 0 14 {98R:G -> 99R:A: adjacent_5p } 0 15 {99R:A -> 98R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 78R:A 0 1 79R:G 0 2 80R:U 0 3 96R:G 0 4 97R:C 0 5 98R:G 0 [Edges] 0 {78R:A -> 79R:G: adjacent_5p upward } 0 1 {79R:G -> 78R:A: adjacent_3p downward } 0 2 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {79R:G -> 80R:U: adjacent_5p upward } 0 5 {80R:U -> 79R:G: adjacent_3p downward } 0 6 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {96R:G -> 97R:C: adjacent_5p upward } 0 11 {97R:C -> 96R:G: adjacent_3p downward } 0 12 {97R:C -> 98R:G: adjacent_5p upward } 0 13 {98R:G -> 97R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 79R:G 0 1 80R:U 0 2 81R:G 0 3 95R:U 0 4 96R:G 0 5 97R:C 0 [Edges] 0 {79R:G -> 80R:U: adjacent_5p upward } 0 1 {80R:U -> 79R:G: adjacent_3p downward } 0 2 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {80R:U -> 81R:G: adjacent_5p } 0 5 {81R:G -> 80R:U: adjacent_3p } 0 6 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {81R:G -> 96R:G: outward } 0 11 {96R:G -> 81R:G: outward } 0 12 {95R:U -> 96R:G: adjacent_5p } 0 13 {96R:G -> 95R:U: adjacent_3p } 0 14 {96R:G -> 97R:C: adjacent_5p upward } 0 15 {97R:C -> 96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 80R:U 0 1 81R:G 0 2 82R:U 0 3 94R:A 0 4 95R:U 0 5 96R:G 0 [Edges] 0 {80R:U -> 81R:G: adjacent_5p } 0 1 {81R:G -> 80R:U: adjacent_3p } 0 2 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {81R:G -> 82R:U: adjacent_5p upward } 0 5 {82R:U -> 81R:G: adjacent_3p downward } 0 6 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {81R:G -> 96R:G: outward } 0 9 {96R:G -> 81R:G: outward } 0 10 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {94R:A -> 95R:U: adjacent_5p upward } 0 13 {95R:U -> 94R:A: adjacent_3p downward } 0 14 {95R:U -> 96R:G: adjacent_5p } 0 15 {96R:G -> 95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 81R:G 0 1 82R:U 0 2 83R:G 0 3 93R:C 0 4 94R:A 0 5 95R:U 0 [Edges] 0 {81R:G -> 82R:U: adjacent_5p upward } 0 1 {82R:U -> 81R:G: adjacent_3p downward } 0 2 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {82R:U -> 83R:G: adjacent_5p upward } 0 5 {83R:G -> 82R:U: adjacent_3p downward } 0 6 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {83R:G -> 94R:A: outward } 0 11 {94R:A -> 83R:G: outward } 0 12 {93R:C -> 94R:A: adjacent_5p upward } 0 13 {94R:A -> 93R:C: adjacent_3p downward } 0 14 {94R:A -> 95R:U: adjacent_5p upward } 0 15 {95R:U -> 94R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 82R:U 0 1 83R:G 0 2 84R:G 0 3 92R:C 0 4 93R:C 0 5 94R:A 0 [Edges] 0 {82R:U -> 83R:G: adjacent_5p upward } 0 1 {83R:G -> 82R:U: adjacent_3p downward } 0 2 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {83R:G -> 84R:G: adjacent_5p upward } 0 5 {84R:G -> 83R:G: adjacent_3p downward } 0 6 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {83R:G -> 94R:A: outward } 0 9 {94R:A -> 83R:G: outward } 0 10 {84R:G -> 92R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {92R:C -> 84R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {92R:C -> 93R:C: adjacent_5p } 0 13 {93R:C -> 92R:C: adjacent_3p } 0 14 {93R:C -> 94R:A: adjacent_5p upward } 0 15 {94R:A -> 93R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 83R:G 0 1 84R:G 0 2 85R:G 0 3 91R:C 0 4 92R:C 0 5 93R:C 0 [Edges] 0 {83R:G -> 84R:G: adjacent_5p upward } 0 1 {84R:G -> 83R:G: adjacent_3p downward } 0 2 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {84R:G -> 85R:G: adjacent_5p upward } 0 5 {85R:G -> 84R:G: adjacent_3p downward } 0 6 {84R:G -> 92R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {92R:C -> 84R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {85R:G -> 91R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {91R:C -> 85R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {91R:C -> 92R:C: adjacent_5p } 0 11 {92R:C -> 91R:C: adjacent_3p } 0 12 {92R:C -> 93R:C: adjacent_5p } 0 13 {93R:C -> 92R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 84R:G 0 1 85R:G 0 2 86R:G 0 3 90R:C 0 4 91R:C 0 5 92R:C 0 [Edges] 0 {84R:G -> 85R:G: adjacent_5p upward } 0 1 {85R:G -> 84R:G: adjacent_3p downward } 0 2 {84R:G -> 92R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {92R:C -> 84R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {85R:G -> 86R:G: adjacent_5p upward } 0 5 {86R:G -> 85R:G: adjacent_3p downward } 0 6 {85R:G -> 91R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {91R:C -> 85R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {86R:G -> 90R:C: pairing antiparallel cis 128 Bs/Ww } 0 9 {90R:C -> 86R:G: pairing antiparallel cis 128 Ww/Bs } 0 10 {90R:C -> 91R:C: adjacent_5p } 0 11 {91R:C -> 90R:C: adjacent_3p } 0 12 {91R:C -> 92R:C: adjacent_5p } 0 13 {92R:C -> 91R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 14R:U 0 4 15R:C 0 5 16R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {16R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p } 0 5 {4R:A -> 3R:G: adjacent_3p } 0 6 {3R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {15R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {14R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {14R:U -> 15R:C: adjacent_5p upward } 0 11 {15R:C -> 14R:U: adjacent_3p downward } 0 12 {15R:C -> 16R:C: adjacent_5p upward } 0 13 {16R:C -> 15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:A 0 2 5R:G 0 3 13R:C 0 4 14R:U 0 5 15R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p } 0 1 {4R:A -> 3R:G: adjacent_3p } 0 2 {3R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {15R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:G: adjacent_5p upward } 0 5 {5R:G -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {14R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {13R:C -> 5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {13R:C -> 14R:U: adjacent_5p upward } 0 11 {14R:U -> 13R:C: adjacent_3p downward } 0 12 {14R:U -> 15R:C: adjacent_5p upward } 0 13 {15R:C -> 14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 18R:C 0 1 19R:C 0 2 20R:C 0 3 30R:G 0 4 31R:G 0 5 32R:G 0 [Edges] 0 {18R:C -> 19R:C: adjacent_5p } 0 1 {19R:C -> 18R:C: adjacent_3p } 0 2 {18R:C -> 32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {32R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {19R:C -> 20R:C: adjacent_5p upward } 0 5 {20R:C -> 19R:C: adjacent_3p downward } 0 6 {19R:C -> 31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {31R:G -> 19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {20R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {30R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {30R:G -> 31R:G: adjacent_5p upward } 0 11 {31R:G -> 30R:G: adjacent_3p downward } 0 12 {31R:G -> 32R:G: adjacent_5p upward } 0 13 {32R:G -> 31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 24R:U 0 1 25R:U 0 2 26R:C 0 3 39R:G 0 4 40R:A 0 5 41R:A 0 [Edges] 0 {24R:U -> 25R:U: adjacent_5p } 0 1 {25R:U -> 24R:U: adjacent_3p } 0 2 {24R:U -> 41R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {41R:A -> 24R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {25R:U -> 26R:C: adjacent_5p upward } 0 5 {26R:C -> 25R:U: adjacent_3p downward } 0 6 {25R:U -> 40R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {40R:A -> 25R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {26R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {39R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {39R:G -> 40R:A: adjacent_5p upward } 0 11 {40R:A -> 39R:G: adjacent_3p downward } 0 12 {40R:A -> 41R:A: adjacent_5p upward } 0 13 {41R:A -> 40R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 25R:U 0 1 26R:C 0 2 27R:C 0 3 38R:G 0 4 39R:G 0 5 40R:A 0 [Edges] 0 {25R:U -> 26R:C: adjacent_5p upward } 0 1 {26R:C -> 25R:U: adjacent_3p downward } 0 2 {25R:U -> 40R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {40R:A -> 25R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {26R:C -> 27R:C: adjacent_5p upward } 0 5 {27R:C -> 26R:C: adjacent_3p downward } 0 6 {26R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {39R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {38R:G -> 39R:G: adjacent_5p upward } 0 11 {39R:G -> 38R:G: adjacent_3p downward } 0 12 {39R:G -> 40R:A: adjacent_5p upward } 0 13 {40R:A -> 39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 26R:C 0 1 27R:C 0 2 28R:G 0 3 37R:C 0 4 38R:G 0 5 39R:G 0 [Edges] 0 {26R:C -> 27R:C: adjacent_5p upward } 0 1 {27R:C -> 26R:C: adjacent_3p downward } 0 2 {26R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {39R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {27R:C -> 28R:G: adjacent_5p } 0 5 {28R:G -> 27R:C: adjacent_3p } 0 6 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {28R:G -> 37R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {37R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {28R:G -> 38R:G: outward } 0 11 {38R:G -> 28R:G: outward } 0 12 {37R:C -> 38R:G: adjacent_5p } 0 13 {38R:G -> 37R:C: adjacent_3p } 0 14 {38R:G -> 39R:G: adjacent_5p upward } 0 15 {39R:G -> 38R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 27R:C 0 1 28R:G 0 2 29R:A 0 3 36R:U 0 4 37R:C 0 5 38R:G 0 [Edges] 0 {27R:C -> 28R:G: adjacent_5p } 0 1 {28R:G -> 27R:C: adjacent_3p } 0 2 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {28R:G -> 29R:A: adjacent_5p upward } 0 5 {29R:A -> 28R:G: adjacent_3p downward } 0 6 {28R:G -> 37R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {37R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {28R:G -> 38R:G: outward } 0 9 {38R:G -> 28R:G: outward } 0 10 {29R:A -> 36R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {36R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {36R:U -> 37R:C: adjacent_5p upward } 0 13 {37R:C -> 36R:U: adjacent_3p downward } 0 14 {37R:C -> 38R:G: adjacent_5p } 0 15 {38R:G -> 37R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 28R:G 0 1 29R:A 0 2 30R:G 0 3 35R:A 0 4 36R:U 0 5 37R:C 0 [Edges] 0 {28R:G -> 29R:A: adjacent_5p upward } 0 1 {29R:A -> 28R:G: adjacent_3p downward } 0 2 {28R:G -> 37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {37R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {29R:A -> 30R:G: adjacent_5p upward } 0 5 {30R:G -> 29R:A: adjacent_3p downward } 0 6 {29R:A -> 36R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {36R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {30R:G -> 35R:A: pairing antiparallel cis one_hbond Bs/Ww } 0 9 {35R:A -> 30R:G: pairing antiparallel cis one_hbond Ww/Bs } 0 10 {35R:A -> 36R:U: adjacent_5p } 0 11 {36R:U -> 35R:A: adjacent_3p } 0 12 {36R:U -> 37R:C: adjacent_5p upward } 0 13 {37R:C -> 36R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 Q1R:C 0 1 Q2R:U 0 2 Q3R:G 0 3 Q19R:C 0 4 Q20R:A 0 5 Q21R:G 0 [Edges] 0 {Q1R:C -> Q2R:U: adjacent_5p upward } 0 1 {Q2R:U -> Q1R:C: adjacent_3p downward } 0 2 {Q1R:C -> Q21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {Q21R:G -> Q1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {Q2R:U -> Q3R:G: adjacent_5p } 0 5 {Q3R:G -> Q2R:U: adjacent_3p } 0 6 {Q2R:U -> Q20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {Q20R:A -> Q2R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {Q3R:G -> Q19R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {Q19R:C -> Q3R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {Q3R:G -> Q20R:A: outward } 0 11 {Q20R:A -> Q3R:G: outward } 0 12 {Q19R:C -> Q20R:A: adjacent_5p upward } 0 13 {Q20R:A -> Q19R:C: adjacent_3p downward } 0 14 {Q20R:A -> Q21R:G: adjacent_5p upward } 0 15 {Q21R:G -> Q20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 Q2R:U 0 1 Q3R:G 0 2 Q4R:G 0 3 Q18R:C 0 4 Q19R:C 0 5 Q20R:A 0 [Edges] 0 {Q2R:U -> Q3R:G: adjacent_5p } 0 1 {Q3R:G -> Q2R:U: adjacent_3p } 0 2 {Q2R:U -> Q20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {Q20R:A -> Q2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {Q3R:G -> Q4R:G: adjacent_5p upward } 0 5 {Q4R:G -> Q3R:G: adjacent_3p downward } 0 6 {Q3R:G -> Q19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {Q19R:C -> Q3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {Q3R:G -> Q20R:A: outward } 0 9 {Q20R:A -> Q3R:G: outward } 0 10 {Q4R:G -> Q18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {Q18R:C -> Q4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {Q18R:C -> Q19R:C: adjacent_5p } 0 13 {Q19R:C -> Q18R:C: adjacent_3p } 0 14 {Q19R:C -> Q20R:A: adjacent_5p upward } 0 15 {Q20R:A -> Q19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 Q3R:G 0 1 Q4R:G 0 2 Q5R:U 0 3 Q17R:U 0 4 Q18R:C 0 5 Q19R:C 0 [Edges] 0 {Q3R:G -> Q4R:G: adjacent_5p upward } 0 1 {Q4R:G -> Q3R:G: adjacent_3p downward } 0 2 {Q3R:G -> Q19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {Q19R:C -> Q3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {Q4R:G -> Q5R:U: adjacent_5p upward } 0 5 {Q5R:U -> Q4R:G: adjacent_3p downward } 0 6 {Q4R:G -> Q18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {Q18R:C -> Q4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {Q5R:U -> Q17R:U: pairing antiparallel cis XVI Ws/Ww } 0 9 {Q17R:U -> Q5R:U: pairing antiparallel cis XVI Ww/Ws } 0 10 {Q17R:U -> Q18R:C: adjacent_5p upward } 0 11 {Q18R:C -> Q17R:U: adjacent_3p downward } 0 12 {Q18R:C -> Q19R:C: adjacent_5p } 0 13 {Q19R:C -> Q18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 R1R:C 0 1 R2R:U 0 2 R3R:G 0 3 R19R:C 0 4 R20R:A 0 5 R21R:G 0 [Edges] 0 {R1R:C -> R2R:U: adjacent_5p upward } 0 1 {R2R:U -> R1R:C: adjacent_3p downward } 0 2 {R1R:C -> R21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R21R:G -> R1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R2R:U -> R3R:G: adjacent_5p upward } 0 5 {R3R:G -> R2R:U: adjacent_3p downward } 0 6 {R2R:U -> R20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {R20R:A -> R2R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {R3R:G -> R19R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R19R:C -> R3R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R3R:G -> R20R:A: outward } 0 11 {R20R:A -> R3R:G: outward } 0 12 {R19R:C -> R20R:A: adjacent_5p upward } 0 13 {R20R:A -> R19R:C: adjacent_3p downward } 0 14 {R20R:A -> R21R:G: adjacent_5p upward } 0 15 {R21R:G -> R20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 R2R:U 0 1 R3R:G 0 2 R4R:G 0 3 R18R:C 0 4 R19R:C 0 5 R20R:A 0 [Edges] 0 {R2R:U -> R3R:G: adjacent_5p upward } 0 1 {R3R:G -> R2R:U: adjacent_3p downward } 0 2 {R2R:U -> R20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R20R:A -> R2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R3R:G -> R4R:G: adjacent_5p upward } 0 5 {R4R:G -> R3R:G: adjacent_3p downward } 0 6 {R3R:G -> R19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R19R:C -> R3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R3R:G -> R20R:A: outward } 0 9 {R20R:A -> R3R:G: outward } 0 10 {R4R:G -> R18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R18R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R18R:C -> R19R:C: adjacent_5p } 0 13 {R19R:C -> R18R:C: adjacent_3p } 0 14 {R19R:C -> R20R:A: adjacent_5p upward } 0 15 {R20R:A -> R19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 R3R:G 0 1 R4R:G 0 2 R5R:U 0 3 R17R:U 0 4 R18R:C 0 5 R19R:C 0 [Edges] 0 {R3R:G -> R4R:G: adjacent_5p upward } 0 1 {R4R:G -> R3R:G: adjacent_3p downward } 0 2 {R3R:G -> R19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R19R:C -> R3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R4R:G -> R5R:U: adjacent_5p upward } 0 5 {R5R:U -> R4R:G: adjacent_3p downward } 0 6 {R4R:G -> R18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R18R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R5R:U -> R17R:U: pairing antiparallel cis XVI Ws/Ww } 0 9 {R17R:U -> R5R:U: pairing antiparallel cis XVI Ww/Ws } 0 10 {R17R:U -> R18R:C: adjacent_5p upward } 0 11 {R18R:C -> R17R:U: adjacent_3p downward } 0 12 {R18R:C -> R19R:C: adjacent_5p } 0 13 {R19R:C -> R18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:U 0 2 4R:G 0 3 9R:C 0 4 10R:A 0 5 11R:C 0 [Edges] 0 {2R:G -> 3R:U: adjacent_5p upward } 0 1 {3R:U -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {11R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:U -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:U: adjacent_3p downward } 0 6 {3R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {10R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {9R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {9R:C -> 10R:A: adjacent_5p } 0 11 {10R:A -> 9R:C: adjacent_3p } 0 12 {10R:A -> 11R:C: adjacent_5p upward } 0 13 {11R:C -> 10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:A 0 1 3R:C 0 2 4R:A 0 3 15R:U 0 4 16R:G 0 5 17R:U 0 [Edges] 0 {2R:A -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:A: adjacent_3p downward } 0 2 {2R:A -> 17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {17R:U -> 2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {3R:C -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {16R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {15R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {4R:A -> 16R:G: outward } 0 11 {16R:G -> 4R:A: outward } 0 12 {15R:U -> 16R:G: adjacent_5p upward } 0 13 {16R:G -> 15R:U: adjacent_3p downward } 0 14 {16R:G -> 17R:U: adjacent_5p upward } 0 15 {17R:U -> 16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:A 0 2 5R:G 0 3 14R:U 0 4 15R:U 0 5 16R:G 0 [Edges] 0 {3R:C -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {16R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:G: adjacent_5p upward } 0 5 {5R:G -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {15R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:A -> 16R:G: outward } 0 9 {16R:G -> 4R:A: outward } 0 10 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {14R:U -> 15R:U: adjacent_5p upward } 0 13 {15R:U -> 14R:U: adjacent_3p downward } 0 14 {15R:U -> 16R:G: adjacent_5p upward } 0 15 {16R:G -> 15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:G 0 2 6R:G 0 3 13R:U 0 4 14R:U 0 5 15R:U 0 [Edges] 0 {4R:A -> 5R:G: adjacent_5p upward } 0 1 {5R:G -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {15R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:G -> 6R:G: adjacent_5p upward } 0 5 {6R:G -> 5R:G: adjacent_3p downward } 0 6 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {6R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {13R:U -> 6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {13R:U -> 14R:U: adjacent_5p upward } 0 11 {14R:U -> 13R:U: adjacent_3p downward } 0 12 {14R:U -> 15R:U: adjacent_5p upward } 0 13 {15R:U -> 14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 5R:G 0 1 6R:G 0 2 7R:G 0 3 12R:C 0 4 13R:U 0 5 14R:U 0 [Edges] 0 {5R:G -> 6R:G: adjacent_5p upward } 0 1 {6R:G -> 5R:G: adjacent_3p downward } 0 2 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {6R:G -> 7R:G: adjacent_5p upward } 0 5 {7R:G -> 6R:G: adjacent_3p downward } 0 6 {6R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {13R:U -> 6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {7R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {12R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {12R:C -> 13R:U: adjacent_5p upward } 0 11 {13R:U -> 12R:C: adjacent_3p downward } 0 12 {13R:U -> 14R:U: adjacent_5p upward } 0 13 {14R:U -> 13R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 6R:G 0 1 7R:G 0 2 8R:G 0 3 11R:A 0 4 12R:C 0 5 13R:U 0 [Edges] 0 {6R:G -> 7R:G: adjacent_5p upward } 0 1 {7R:G -> 6R:G: adjacent_3p downward } 0 2 {6R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {13R:U -> 6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {7R:G -> 8R:G: adjacent_5p upward } 0 5 {8R:G -> 7R:G: adjacent_3p downward } 0 6 {7R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {12R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {8R:G -> 11R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {11R:A -> 8R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {11R:A -> 12R:C: adjacent_5p upward } 0 11 {12R:C -> 11R:A: adjacent_3p downward } 0 12 {12R:C -> 13R:U: adjacent_5p upward } 0 13 {13R:U -> 12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:U 0 3 B19R:A 0 4 B20R:G 0 5 B21R:U 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p } 0 1 {A11R:C -> A10R:G: adjacent_3p } 0 2 {A10R:G -> B21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B21R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A11R:C -> A12R:U: adjacent_5p } 0 5 {A12R:U -> A11R:C: adjacent_3p } 0 6 {A11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B19R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B19R:A -> B20R:G: adjacent_5p upward } 0 11 {B20R:G -> B19R:A: adjacent_3p downward } 0 12 {B20R:G -> B21R:U: adjacent_5p upward } 0 13 {B21R:U -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 B9R:U 0 4 B10R:G 0 5 B11R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A4R:A -> B10R:G: outward } 0 11 {B10R:G -> A4R:A: outward } 0 12 {B9R:U -> B10R:G: adjacent_5p } 0 13 {B10R:G -> B9R:U: adjacent_3p } 0 14 {B10R:G -> B11R:C: adjacent_5p upward } 0 15 {B11R:C -> B10R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 B8R:U 0 4 B9R:U 0 5 B10R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> B10R:G: outward } 0 9 {B10R:G -> A4R:A: outward } 0 10 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B8R:U -> B9R:U: adjacent_5p } 0 13 {B9R:U -> B8R:U: adjacent_3p } 0 14 {B9R:U -> B10R:G: adjacent_5p } 0 15 {B10R:G -> B9R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:A 0 3 B7R:U 0 4 B8R:U 0 5 B9R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B7R:U -> B8R:U: adjacent_5p } 0 11 {B8R:U -> B7R:U: adjacent_3p } 0 12 {B8R:U -> B9R:U: adjacent_5p } 0 13 {B9R:U -> B8R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:U 0 3 B6R:A 0 4 B7R:U 0 5 B8R:U 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B6R:A -> B7R:U: adjacent_5p upward } 0 11 {B7R:U -> B6R:A: adjacent_3p downward } 0 12 {B7R:U -> B8R:U: adjacent_5p } 0 13 {B8R:U -> B7R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:U 0 2 A8R:U 0 3 B5R:A 0 4 B6R:A 0 5 B7R:U 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B5R:A -> B6R:A: adjacent_5p upward } 0 11 {B6R:A -> B5R:A: adjacent_3p downward } 0 12 {B6R:A -> B7R:U: adjacent_5p upward } 0 13 {B7R:U -> B6R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:U 0 3 B4R:A 0 4 B5R:A 0 5 B6R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B4R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B4R:A -> B5R:A: adjacent_5p upward } 0 11 {B5R:A -> B4R:A: adjacent_3p downward } 0 12 {B5R:A -> B6R:A: adjacent_5p upward } 0 13 {B6R:A -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:U 0 2 A10R:G 0 3 B3R:C 0 4 B4R:A 0 5 B5R:A 0 [Edges] 0 {A8R:U -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B3R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A10R:G -> B4R:A: outward } 0 11 {B4R:A -> A10R:G: outward } 0 12 {B3R:C -> B4R:A: adjacent_5p upward } 0 13 {B4R:A -> B3R:C: adjacent_3p downward } 0 14 {B4R:A -> B5R:A: adjacent_5p upward } 0 15 {B5R:A -> B4R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:G 0 2 A11R:C 0 3 B2R:G 0 4 B3R:C 0 5 B4R:A 0 [Edges] 0 {A9R:U -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B4R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B3R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> B4R:A: outward } 0 9 {B4R:A -> A10R:G: outward } 0 10 {A11R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B2R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B2R:G -> B3R:C: adjacent_5p upward } 0 13 {B3R:C -> B2R:G: adjacent_3p downward } 0 14 {B3R:C -> B4R:A: adjacent_5p upward } 0 15 {B4R:A -> B3R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:A 0 3 16R:U 0 4 17R:G 0 5 18R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {16R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {4R:A -> 17R:G: outward } 0 11 {17R:G -> 4R:A: outward } 0 12 {16R:U -> 17R:G: adjacent_5p upward } 0 13 {17R:G -> 16R:U: adjacent_3p downward } 0 14 {17R:G -> 18R:C: adjacent_5p upward } 0 15 {18R:C -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:A 0 2 5R:C 0 3 15R:G 0 4 16R:U 0 5 17R:G 0 [Edges] 0 {3R:C -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {16R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:A -> 17R:G: outward } 0 9 {17R:G -> 4R:A: outward } 0 10 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {15R:G -> 16R:U: adjacent_5p upward } 0 13 {16R:U -> 15R:G: adjacent_3p downward } 0 14 {16R:U -> 17R:G: adjacent_5p upward } 0 15 {17R:G -> 16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:C 0 2 6R:C 0 3 14R:G 0 4 15R:G 0 5 16R:U 0 [Edges] 0 {4R:A -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {16R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:C -> 6R:C: adjacent_5p upward } 0 5 {6R:C -> 5R:C: adjacent_3p downward } 0 6 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {14R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {14R:G -> 15R:G: adjacent_5p upward } 0 11 {15R:G -> 14R:G: adjacent_3p downward } 0 12 {15R:G -> 16R:U: adjacent_5p upward } 0 13 {16R:U -> 15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 5R:C 0 1 6R:C 0 2 7R:U 0 3 13R:C 0 4 14R:G 0 5 15R:G 0 [Edges] 0 {5R:C -> 6R:C: adjacent_5p upward } 0 1 {6R:C -> 5R:C: adjacent_3p downward } 0 2 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {6R:C -> 7R:U: adjacent_5p upward } 0 5 {7R:U -> 6R:C: adjacent_3p downward } 0 6 {6R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {14R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {7R:U -> 13R:C: pairing antiparallel cis one_hbond 100 Ws/Bh } 0 9 {13R:C -> 7R:U: pairing antiparallel cis one_hbond 100 Bh/Ws } 0 10 {13R:C -> 14R:G: adjacent_5p upward } 0 11 {14R:G -> 13R:C: adjacent_3p downward } 0 12 {14R:G -> 15R:G: adjacent_5p upward } 0 13 {15R:G -> 14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 13R:U 0 4 14R:C 0 5 15R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {15R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {14R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 13R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {13R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {13R:U -> 14R:C: adjacent_5p upward } 0 11 {14R:C -> 13R:U: adjacent_3p downward } 0 12 {14R:C -> 15R:C: adjacent_5p upward } 0 13 {15R:C -> 14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:A 0 2 5R:C 0 3 12R:G 0 4 13R:U 0 5 14R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {14R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 13R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {13R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {12R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {12R:G -> 13R:U: adjacent_5p upward } 0 11 {13R:U -> 12R:G: adjacent_3p downward } 0 12 {13R:U -> 14R:C: adjacent_5p upward } 0 13 {14R:C -> 13R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:C 0 2 6R:C 0 3 11R:G 0 4 12R:G 0 5 13R:U 0 [Edges] 0 {4R:A -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {13R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:C -> 6R:C: adjacent_5p } 0 5 {6R:C -> 5R:C: adjacent_3p } 0 6 {5R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {12R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {11R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {11R:G -> 12R:G: adjacent_5p upward } 0 11 {12R:G -> 11R:G: adjacent_3p downward } 0 12 {12R:G -> 13R:U: adjacent_5p upward } 0 13 {13R:U -> 12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 5R:C 0 1 6R:C 0 2 7R:A 0 3 10R:A 0 4 11R:G 0 5 12R:G 0 [Edges] 0 {5R:C -> 6R:C: adjacent_5p } 0 1 {6R:C -> 5R:C: adjacent_3p } 0 2 {5R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {12R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {6R:C -> 7R:A: adjacent_5p } 0 5 {7R:A -> 6R:C: adjacent_3p } 0 6 {6R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {11R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {7R:A -> 10R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 9 {10R:A -> 7R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 10 {10R:A -> 11R:G: adjacent_5p upward } 0 11 {11R:G -> 10R:A: adjacent_3p downward } 0 12 {11R:G -> 12R:G: adjacent_5p upward } 0 13 {12R:G -> 11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:C 0 1 3R:U 0 2 4R:C 0 3 11R:G 0 4 12R:A 0 5 13R:G 0 [Edges] 0 {2R:C -> 3R:U: adjacent_5p upward } 0 1 {3R:U -> 2R:C: adjacent_3p downward } 0 2 {2R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {13R:G -> 2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:U -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:U: adjacent_3p downward } 0 6 {3R:U -> 12R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {12R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {11R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {11R:G -> 12R:A: adjacent_5p upward } 0 11 {12R:A -> 11R:G: adjacent_3p downward } 0 12 {12R:A -> 13R:G: adjacent_5p upward } 0 13 {13R:G -> 12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 3R:U 0 1 4R:C 0 2 5R:C 0 3 10R:G 0 4 11R:G 0 5 12R:A 0 [Edges] 0 {3R:U -> 4R:C: adjacent_5p upward } 0 1 {4R:C -> 3R:U: adjacent_3p downward } 0 2 {3R:U -> 12R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {12R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {4R:C -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:C: adjacent_3p downward } 0 6 {4R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {11R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {5R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {10R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {10R:G -> 11R:G: adjacent_5p upward } 0 11 {11R:G -> 10R:G: adjacent_3p downward } 0 12 {11R:G -> 12R:A: adjacent_5p upward } 0 13 {12R:A -> 11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B21R:C 0 1 B22R:A 0 2 B23R:G 0 3 B46R:C 0 4 B47R:U 0 5 B48R:G 0 [Edges] 0 {B21R:C -> B22R:A: adjacent_5p } 0 1 {B22R:A -> B21R:C: adjacent_3p } 0 2 {B21R:C -> B48R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B22R:A -> B23R:G: adjacent_5p upward } 0 5 {B23R:G -> B22R:A: adjacent_3p downward } 0 6 {B22R:A -> B47R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B47R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B23R:G -> B46R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {B46R:C -> B23R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {B46R:C -> B47R:U: adjacent_5p } 0 11 {B47R:U -> B46R:C: adjacent_3p } 0 12 {B47R:U -> B48R:G: adjacent_5p } 0 13 {B48R:G -> B47R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B26R:U 0 1 B27R:C 0 2 B28R:C 0 3 B35R:G 0 4 B36R:G 0 5 B37R:A 0 [Edges] 0 {B26R:U -> B27R:C: adjacent_5p upward } 0 1 {B27R:C -> B26R:U: adjacent_3p downward } 0 2 {B26R:U -> B37R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B37R:A -> B26R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B27R:C -> B28R:C: adjacent_5p } 0 5 {B28R:C -> B27R:C: adjacent_3p } 0 6 {B28R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B35R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B35R:G -> B36R:G: adjacent_5p upward } 0 9 {B36R:G -> B35R:G: adjacent_3p downward } 0 10 {B36R:G -> B37R:A: adjacent_5p } 0 11 {B37R:A -> B36R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 R1R:G 0 1 R2R:G 0 2 R3R:C 0 3 R70R:G 0 4 R71R:C 0 5 R72R:C 0 [Edges] 0 {R1R:G -> R2R:G: adjacent_5p upward } 0 1 {R2R:G -> R1R:G: adjacent_3p downward } 0 2 {R1R:G -> R72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R72R:C -> R1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R2R:G -> R3R:C: adjacent_5p upward } 0 5 {R3R:C -> R2R:G: adjacent_3p downward } 0 6 {R2R:G -> R71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {R71R:C -> R2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {R3R:C -> R70R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {R70R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {R70R:G -> R71R:C: adjacent_5p upward } 0 11 {R71R:C -> R70R:G: adjacent_3p downward } 0 12 {R71R:C -> R72R:C: adjacent_5p } 0 13 {R72R:C -> R71R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 R2R:G 0 1 R3R:C 0 2 R4R:G 0 3 R69R:C 0 4 R70R:G 0 5 R71R:C 0 [Edges] 0 {R2R:G -> R3R:C: adjacent_5p upward } 0 1 {R3R:C -> R2R:G: adjacent_3p downward } 0 2 {R2R:G -> R71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {R71R:C -> R2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {R3R:C -> R4R:G: adjacent_5p } 0 5 {R4R:G -> R3R:C: adjacent_3p } 0 6 {R3R:C -> R70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R70R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R4R:G -> R70R:G: outward } 0 11 {R70R:G -> R4R:G: outward } 0 12 {R69R:C -> R70R:G: adjacent_5p upward } 0 13 {R70R:G -> R69R:C: adjacent_3p downward } 0 14 {R70R:G -> R71R:C: adjacent_5p upward } 0 15 {R71R:C -> R70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 R3R:C 0 1 R4R:G 0 2 R5R:C 0 3 R68R:G 0 4 R69R:C 0 5 R70R:G 0 [Edges] 0 {R3R:C -> R4R:G: adjacent_5p } 0 1 {R4R:G -> R3R:C: adjacent_3p } 0 2 {R3R:C -> R70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R70R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R4R:G -> R5R:C: adjacent_5p upward } 0 5 {R5R:C -> R4R:G: adjacent_3p downward } 0 6 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:G -> R70R:G: outward } 0 9 {R70R:G -> R4R:G: outward } 0 10 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R68R:G -> R69R:C: adjacent_5p upward } 0 13 {R69R:C -> R68R:G: adjacent_3p downward } 0 14 {R69R:C -> R70R:G: adjacent_5p upward } 0 15 {R70R:G -> R69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 R4R:G 0 1 R5R:C 0 2 R6R:G 0 3 R67R:C 0 4 R68R:G 0 5 R69R:C 0 [Edges] 0 {R4R:G -> R5R:C: adjacent_5p upward } 0 1 {R5R:C -> R4R:G: adjacent_3p downward } 0 2 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R5R:C -> R6R:G: adjacent_5p } 0 5 {R6R:G -> R5R:C: adjacent_3p } 0 6 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R6R:G -> R67R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R67R:C -> R6R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R6R:G -> R68R:G: outward } 0 11 {R68R:G -> R6R:G: outward } 0 12 {R67R:C -> R68R:G: adjacent_5p upward } 0 13 {R68R:G -> R67R:C: adjacent_3p downward } 0 14 {R68R:G -> R69R:C: adjacent_5p upward } 0 15 {R69R:C -> R68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 R5R:C 0 1 R6R:G 0 2 R7R:U 0 3 R66R:A 0 4 R67R:C 0 5 R68R:G 0 [Edges] 0 {R5R:C -> R6R:G: adjacent_5p } 0 1 {R6R:G -> R5R:C: adjacent_3p } 0 2 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R6R:G -> R7R:U: adjacent_5p } 0 5 {R7R:U -> R6R:G: adjacent_3p } 0 6 {R6R:G -> R67R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R67R:C -> R6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R6R:G -> R68R:G: outward } 0 9 {R68R:G -> R6R:G: outward } 0 10 {R7R:U -> R66R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {R66R:A -> R7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {R66R:A -> R67R:C: adjacent_5p upward } 0 13 {R67R:C -> R66R:A: adjacent_3p downward } 0 14 {R67R:C -> R68R:G: adjacent_5p upward } 0 15 {R68R:G -> R67R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 R11R:C 0 1 R12R:A 0 2 R13R:A 0 3 R22R:A 0 4 R23R:U 0 5 R24R:G 0 [Edges] 0 {R11R:C -> R12R:A: adjacent_5p } 0 1 {R12R:A -> R11R:C: adjacent_3p } 0 2 {R11R:C -> R24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R24R:G -> R11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R12R:A -> R13R:A: adjacent_5p upward } 0 5 {R13R:A -> R12R:A: adjacent_3p downward } 0 6 {R12R:A -> R23R:U: pairing antiparallel cis XX Ww/Ws } 0 7 {R23R:U -> R12R:A: pairing antiparallel cis XX Ws/Ww } 0 8 {R12R:A -> R24R:G: outward } 0 9 {R24R:G -> R12R:A: outward } 0 10 {R13R:A -> R22R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 11 {R22R:A -> R13R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 12 {R22R:A -> R23R:U: adjacent_5p upward } 0 13 {R23R:U -> R22R:A: adjacent_3p downward } 0 14 {R23R:U -> R24R:G: adjacent_5p } 0 15 {R24R:G -> R23R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 R27R:G 0 1 R28R:C 0 2 R29R:G 0 3 R41R:C 0 4 R42R:G 0 5 R43R:U 0 [Edges] 0 {R27R:G -> R28R:C: adjacent_5p upward } 0 1 {R28R:C -> R27R:G: adjacent_3p downward } 0 2 {R27R:G -> R43R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {R43R:U -> R27R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {R28R:C -> R29R:G: adjacent_5p upward } 0 5 {R29R:G -> R28R:C: adjacent_3p downward } 0 6 {R28R:C -> R42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R42R:G -> R28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R29R:G -> R41R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R41R:C -> R29R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R29R:G -> R42R:G: outward } 0 11 {R42R:G -> R29R:G: outward } 0 12 {R41R:C -> R42R:G: adjacent_5p upward } 0 13 {R42R:G -> R41R:C: adjacent_3p downward } 0 14 {R42R:G -> R43R:U: adjacent_5p upward } 0 15 {R43R:U -> R42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 R28R:C 0 1 R29R:G 0 2 R30R:G 0 3 R40R:C 0 4 R41R:C 0 5 R42R:G 0 [Edges] 0 {R28R:C -> R29R:G: adjacent_5p upward } 0 1 {R29R:G -> R28R:C: adjacent_3p downward } 0 2 {R28R:C -> R42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R42R:G -> R28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R29R:G -> R30R:G: adjacent_5p upward } 0 5 {R30R:G -> R29R:G: adjacent_3p downward } 0 6 {R29R:G -> R41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R41R:C -> R29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R29R:G -> R42R:G: outward } 0 9 {R42R:G -> R29R:G: outward } 0 10 {R30R:G -> R40R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 11 {R40R:C -> R30R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 12 {R40R:C -> R41R:C: adjacent_5p } 0 13 {R41R:C -> R40R:C: adjacent_3p } 0 14 {R41R:C -> R42R:G: adjacent_5p upward } 0 15 {R42R:G -> R41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 R49R:U 0 1 R50R:C 0 2 R51R:C 0 3 R63R:G 0 4 R64R:G 0 5 R65R:A 0 [Edges] 0 {R49R:U -> R50R:C: adjacent_5p upward } 0 1 {R50R:C -> R49R:U: adjacent_3p downward } 0 2 {R49R:U -> R65R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R65R:A -> R49R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R50R:C -> R51R:C: adjacent_5p upward } 0 5 {R51R:C -> R50R:C: adjacent_3p downward } 0 6 {R50R:C -> R64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R64R:G -> R50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {R51R:C -> R64R:G: outward } 0 11 {R64R:G -> R51R:C: outward } 0 12 {R63R:G -> R64R:G: adjacent_5p upward } 0 13 {R64R:G -> R63R:G: adjacent_3p downward } 0 14 {R64R:G -> R65R:A: adjacent_5p upward } 0 15 {R65R:A -> R64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 R50R:C 0 1 R51R:C 0 2 R52R:G 0 3 R62R:C 0 4 R63R:G 0 5 R64R:G 0 [Edges] 0 {R50R:C -> R51R:C: adjacent_5p upward } 0 1 {R51R:C -> R50R:C: adjacent_3p downward } 0 2 {R50R:C -> R64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R64R:G -> R50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R51R:C -> R52R:G: adjacent_5p } 0 5 {R52R:G -> R51R:C: adjacent_3p } 0 6 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R51R:C -> R64R:G: outward } 0 9 {R64R:G -> R51R:C: outward } 0 10 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R52R:G -> R63R:G: outward } 0 13 {R63R:G -> R52R:G: outward } 0 14 {R62R:C -> R63R:G: adjacent_5p } 0 15 {R63R:G -> R62R:C: adjacent_3p } 0 16 {R63R:G -> R64R:G: adjacent_5p upward } 0 17 {R64R:G -> R63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . [GraphModel] [Vertices] 0 R51R:C 0 1 R52R:G 0 2 R53R:G 0 3 R61R:C 0 4 R62R:C 0 5 R63R:G 0 [Edges] 0 {R51R:C -> R52R:G: adjacent_5p } 0 1 {R52R:G -> R51R:C: adjacent_3p } 0 2 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R52R:G -> R53R:G: adjacent_5p upward } 0 5 {R53R:G -> R52R:G: adjacent_3p downward } 0 6 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R52R:G -> R63R:G: outward } 0 9 {R63R:G -> R52R:G: outward } 0 10 {R53R:G -> R61R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R61R:C -> R53R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R53R:G -> R62R:C: outward } 0 13 {R62R:C -> R53R:G: outward } 0 14 {R61R:C -> R62R:C: adjacent_5p } 0 15 {R62R:C -> R61R:C: adjacent_3p } 0 16 {R62R:C -> R63R:G: adjacent_5p } 0 17 {R63R:G -> R62R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A35R:C 0 4 A36R:A 0 5 A37R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A37R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A36R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A35R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A4R:G -> A36R:A: outward } 0 11 {A36R:A -> A4R:G: outward } 0 12 {A35R:C -> A36R:A: adjacent_5p } 0 13 {A36R:A -> A35R:C: adjacent_3p } 0 14 {A36R:A -> A37R:C: adjacent_5p upward } 0 15 {A37R:C -> A36R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A34R:G 0 4 A35R:C 0 5 A36R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A36R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A35R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A36R:A: outward } 0 9 {A36R:A -> A4R:G: outward } 0 10 {A5R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A34R:G -> A35R:C: adjacent_5p upward } 0 13 {A35R:C -> A34R:G: adjacent_3p downward } 0 14 {A35R:C -> A36R:A: adjacent_5p } 0 15 {A36R:A -> A35R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:A 0 2 A7R:G 0 3 A32R:A 0 4 A33R:C 0 5 A34R:G 0 [Edges] 0 {A5R:C -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A7R:G -> A32R:A: pairing antiparallel trans one_hbond 63 Ss/Hw } 0 7 {A32R:A -> A7R:G: pairing antiparallel trans one_hbond 63 Hw/Ss } 0 8 {A32R:A -> A33R:C: adjacent_5p upward } 0 9 {A33R:C -> A32R:A: adjacent_3p downward } 0 10 {A33R:C -> A34R:G: adjacent_5p } 0 11 {A34R:G -> A33R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:C 0 2 A12R:A 0 3 A25R:G 0 4 A26R:U 0 5 A27R:A 0 [Edges] 0 {A10R:A -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:A: adjacent_3p downward } 0 2 {A10R:A -> A27R:A: pairing antiparallel trans one_hbond 40 Bh/Ss } 0 3 {A27R:A -> A10R:A: pairing antiparallel trans one_hbond 40 Ss/Bh } 0 4 {A11R:C -> A12R:A: adjacent_5p } 0 5 {A12R:A -> A11R:C: adjacent_3p } 0 6 {A11R:C -> A26R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 7 {A26R:U -> A11R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 8 {A12R:A -> A25R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 9 {A25R:G -> A12R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 10 {A25R:G -> A26R:U: adjacent_5p upward } 0 11 {A26R:U -> A25R:G: adjacent_3p downward } 0 12 {A26R:U -> A27R:A: adjacent_5p upward } 0 13 {A27R:A -> A26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:A 0 2 A13R:G 0 3 A24R:C 0 4 A25R:G 0 5 A26R:U 0 [Edges] 0 {A11R:C -> A12R:A: adjacent_5p } 0 1 {A12R:A -> A11R:C: adjacent_3p } 0 2 {A11R:C -> A26R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 3 {A26R:U -> A11R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 4 {A12R:A -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A25R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 7 {A25R:G -> A12R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 8 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A24R:C -> A25R:G: adjacent_5p upward } 0 11 {A25R:G -> A24R:C: adjacent_3p downward } 0 12 {A25R:G -> A26R:U: adjacent_5p upward } 0 13 {A26R:U -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:G 0 2 A14R:C 0 3 A23R:G 0 4 A24R:C 0 5 A25R:G 0 [Edges] 0 {A12R:A -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A25R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 3 {A25R:G -> A12R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A23R:G -> A24R:C: adjacent_5p upward } 0 11 {A24R:C -> A23R:G: adjacent_3p downward } 0 12 {A24R:C -> A25R:G: adjacent_5p upward } 0 13 {A25R:G -> A24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:G 0 3 A22R:C 0 4 A23R:G 0 5 A24R:C 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A15R:G: adjacent_5p } 0 5 {A15R:G -> A14R:C: adjacent_3p } 0 6 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A22R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A15R:G -> A23R:G: outward } 0 11 {A23R:G -> A15R:G: outward } 0 12 {A22R:C -> A23R:G: adjacent_5p } 0 13 {A23R:G -> A22R:C: adjacent_3p } 0 14 {A23R:G -> A24R:C: adjacent_5p upward } 0 15 {A24R:C -> A23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:G 0 2 A16R:C 0 3 A21R:G 0 4 A22R:C 0 5 A23R:G 0 [Edges] 0 {A14R:C -> A15R:G: adjacent_5p } 0 1 {A15R:G -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:G -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A23R:G: outward } 0 9 {A23R:G -> A15R:G: outward } 0 10 {A16R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:G -> A22R:C: adjacent_5p upward } 0 13 {A22R:C -> A21R:G: adjacent_3p downward } 0 14 {A22R:C -> A23R:G: adjacent_5p } 0 15 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:C 0 2 A17R:U 0 3 A20R:G 0 4 A21R:G 0 5 A22R:C 0 [Edges] 0 {A15R:G -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:C -> A17R:U: adjacent_5p upward } 0 5 {A17R:U -> A16R:C: adjacent_3p downward } 0 6 {A16R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:U -> A20R:G: pairing parallel trans one_hbond 87 Bs/Ww } 0 9 {A20R:G -> A17R:U: pairing parallel trans one_hbond 87 Ww/Bs } 0 10 {A20R:G -> A21R:G: adjacent_5p outward } 0 11 {A21R:G -> A20R:G: adjacent_3p outward } 0 12 {A21R:G -> A22R:C: adjacent_5p upward } 0 13 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A20R:U 0 4 A21R:G 0 5 A22R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p } 0 5 {A4R:A -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A4R:A -> A21R:G: outward } 0 11 {A21R:G -> A4R:A: outward } 0 12 {A20R:U -> A21R:G: adjacent_5p } 0 13 {A21R:G -> A20R:U: adjacent_3p } 0 14 {A21R:G -> A22R:C: adjacent_5p upward } 0 15 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 A19R:U 0 4 A20R:U 0 5 A21R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p } 0 1 {A4R:A -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A21R:G: outward } 0 9 {A21R:G -> A4R:A: outward } 0 10 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A19R:U -> A20R:U: adjacent_5p upward } 0 13 {A20R:U -> A19R:U: adjacent_3p downward } 0 14 {A20R:U -> A21R:G: adjacent_5p } 0 15 {A21R:G -> A20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:U 0 3 A18R:G 0 4 A19R:U 0 5 A20R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {A18R:G -> A19R:U: adjacent_5p upward } 0 11 {A19R:U -> A18R:G: adjacent_3p downward } 0 12 {A19R:U -> A20R:U: adjacent_5p upward } 0 13 {A20R:U -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:G 0 2 A11R:C 0 3 B14R:G 0 4 B15R:C 0 5 B16R:A 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> B16R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 3 {B16R:A -> A9R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B15R:C: pairing antiparallel cis 127 Ww/Ww } 0 7 {B15R:C -> A10R:G: pairing antiparallel cis 127 Ww/Ww } 0 8 {A11R:C -> B14R:G: pairing antiparallel cis 128 Ww/Ww } 0 9 {B14R:G -> A11R:C: pairing antiparallel cis 128 Ww/Ww } 0 10 {B14R:G -> B15R:C: adjacent_5p upward } 0 11 {B15R:C -> B14R:G: adjacent_3p downward } 0 12 {B15R:C -> B16R:A: adjacent_5p upward } 0 13 {B16R:A -> B15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:G 0 3 B13R:C 0 4 B14R:G 0 5 B15R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis 127 Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis 127 Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:C: adjacent_3p } 0 6 {A11R:C -> B14R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {B14R:G -> A11R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 9 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 10 {B13R:C -> B14R:G: adjacent_5p } 0 11 {B14R:G -> B13R:C: adjacent_3p } 0 12 {B14R:G -> B15R:C: adjacent_5p upward } 0 13 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:C 0 3 B12R:G 0 4 B13R:C 0 5 B14R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> B14R:G: pairing antiparallel cis 128 Ww/Ww } 0 3 {B14R:G -> A11R:C: pairing antiparallel cis 128 Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 8 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 9 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 10 {B12R:G -> B13R:C: adjacent_5p upward } 0 11 {B13R:C -> B12R:G: adjacent_3p downward } 0 12 {B13R:C -> B14R:G: adjacent_5p } 0 13 {B14R:G -> B13R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:G 0 3 B11R:C 0 4 B12R:G 0 5 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 4 {A13R:C -> A14R:G: adjacent_5p } 0 5 {A14R:G -> A13R:C: adjacent_3p } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B11R:C -> B12R:G: adjacent_5p } 0 11 {B12R:G -> B11R:C: adjacent_3p } 0 12 {B12R:G -> B13R:C: adjacent_5p upward } 0 13 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:G 0 2 A15R:C 0 3 B10R:G 0 4 B11R:C 0 5 B12R:G 0 [Edges] 0 {A13R:C -> A14R:G: adjacent_5p } 0 1 {A14R:G -> A13R:C: adjacent_3p } 0 2 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 3 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 4 {A14R:G -> A15R:C: adjacent_5p upward } 0 5 {A15R:C -> A14R:G: adjacent_3p downward } 0 6 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B10R:G -> B11R:C: adjacent_5p upward } 0 11 {B11R:C -> B10R:G: adjacent_3p downward } 0 12 {B11R:C -> B12R:G: adjacent_5p } 0 13 {B12R:G -> B11R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:C 0 2 A16R:A 0 3 B9R:A 0 4 B10R:G 0 5 B11R:C 0 [Edges] 0 {A14R:G -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:C -> A16R:A: adjacent_5p upward } 0 5 {A16R:A -> A15R:C: adjacent_3p downward } 0 6 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:A -> B9R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 9 {B9R:A -> A16R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 10 {B9R:A -> B10R:G: adjacent_5p } 0 11 {B10R:G -> B9R:A: adjacent_3p } 0 12 {B10R:G -> B11R:C: adjacent_5p upward } 0 13 {B11R:C -> B10R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:C 0 2 B4R:A 0 3 B20R:U 0 4 B21R:G 0 5 B22R:C 0 [Edges] 0 {B2R:G -> B3R:C: adjacent_5p upward } 0 1 {B3R:C -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:C -> B4R:A: adjacent_5p } 0 5 {B4R:A -> B3R:C: adjacent_3p } 0 6 {B3R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B20R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B4R:A -> B21R:G: outward } 0 11 {B21R:G -> B4R:A: outward } 0 12 {B20R:U -> B21R:G: adjacent_5p } 0 13 {B21R:G -> B20R:U: adjacent_3p } 0 14 {B21R:G -> B22R:C: adjacent_5p upward } 0 15 {B22R:C -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B3R:C 0 1 B4R:A 0 2 B5R:A 0 3 B19R:U 0 4 B20R:U 0 5 B21R:G 0 [Edges] 0 {B3R:C -> B4R:A: adjacent_5p } 0 1 {B4R:A -> B3R:C: adjacent_3p } 0 2 {B3R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:A -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:A: adjacent_3p downward } 0 6 {B4R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B20R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:A -> B21R:G: outward } 0 9 {B21R:G -> B4R:A: outward } 0 10 {B5R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B19R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B19R:U -> B20R:U: adjacent_5p upward } 0 13 {B20R:U -> B19R:U: adjacent_3p downward } 0 14 {B20R:U -> B21R:G: adjacent_5p } 0 15 {B21R:G -> B20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B4R:A 0 1 B5R:A 0 2 B6R:U 0 3 B18R:G 0 4 B19R:U 0 5 B20R:U 0 [Edges] 0 {B4R:A -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:A: adjacent_3p downward } 0 2 {B4R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B20R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B5R:A -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:U -> B18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B18R:G -> B6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B18R:G -> B19R:U: adjacent_5p upward } 0 11 {B19R:U -> B18R:G: adjacent_3p downward } 0 12 {B19R:U -> B20R:U: adjacent_5p upward } 0 13 {B20R:U -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 20R:U 0 4 21R:C 0 5 22R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 22R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {22R:C -> 2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {21R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 20R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {20R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {20R:U -> 21R:C: adjacent_5p upward } 0 11 {21R:C -> 20R:U: adjacent_3p downward } 0 12 {21R:C -> 22R:C: adjacent_5p } 0 13 {22R:C -> 21R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A18R:U 0 4 A19R:G 0 5 A20R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A4R:A -> A19R:G: outward } 0 11 {A19R:G -> A4R:A: outward } 0 12 {A18R:U -> A19R:G: adjacent_5p } 0 13 {A19R:G -> A18R:U: adjacent_3p } 0 14 {A19R:G -> A20R:C: adjacent_5p upward } 0 15 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 A17R:U 0 4 A18R:U 0 5 A19R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A19R:G: outward } 0 9 {A19R:G -> A4R:A: outward } 0 10 {A5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A17R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A18R:U: outward } 0 13 {A18R:U -> A5R:A: outward } 0 14 {A17R:U -> A18R:U: adjacent_5p } 0 15 {A18R:U -> A17R:U: adjacent_3p } 0 16 {A18R:U -> A19R:G: adjacent_5p } 0 17 {A19R:G -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:C 0 3 A16R:G 0 4 A17R:U 0 5 A18R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A17R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A18R:U: outward } 0 9 {A18R:U -> A5R:A: outward } 0 10 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:G -> A17R:U: adjacent_5p upward } 0 13 {A17R:U -> A16R:G: adjacent_3p downward } 0 14 {A17R:U -> A18R:U: adjacent_5p } 0 15 {A18R:U -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:G 0 3 A15R:C 0 4 A16R:G 0 5 A17R:U 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A17R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A15R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A7R:G -> A16R:G: outward } 0 11 {A16R:G -> A7R:G: outward } 0 12 {A15R:C -> A16R:G: adjacent_5p upward } 0 13 {A16R:G -> A15R:C: adjacent_3p downward } 0 14 {A16R:G -> A17R:U: adjacent_5p upward } 0 15 {A17R:U -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:A 0 2 A10R:U 0 3 B11R:A 0 4 B12R:U 0 5 B13R:C 0 [Edges] 0 {A8R:G -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B13R:C: outward } 0 9 {B13R:C -> A9R:A: outward } 0 10 {A10R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B11R:A -> B12R:U: adjacent_5p upward } 0 13 {B12R:U -> B11R:A: adjacent_3p downward } 0 14 {B12R:U -> B13R:C: adjacent_5p } 0 15 {B13R:C -> B12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:U 0 2 A11R:G 0 3 B10R:C 0 4 B11R:A 0 5 B12R:U 0 [Edges] 0 {A9R:A -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B12R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:U -> A11R:G: adjacent_5p } 0 5 {A11R:G -> A10R:U: adjacent_3p } 0 6 {A10R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B11R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B10R:C -> B11R:A: adjacent_5p upward } 0 11 {B11R:A -> B10R:C: adjacent_3p downward } 0 12 {B11R:A -> B12R:U: adjacent_5p upward } 0 13 {B12R:U -> B11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:G 0 2 A12R:G 0 3 B9R:C 0 4 B10R:C 0 5 B11R:A 0 [Edges] 0 {A10R:U -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:U: adjacent_3p } 0 2 {A10R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B11R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:G -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B9R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B9R:C -> B10R:C: adjacent_5p upward } 0 11 {B10R:C -> B9R:C: adjacent_3p downward } 0 12 {B10R:C -> B11R:A: adjacent_5p upward } 0 13 {B11R:A -> B10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:G 0 2 A13R:U 0 3 B8R:A 0 4 B9R:C 0 5 B10R:C 0 [Edges] 0 {A11R:G -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:U: adjacent_5p } 0 5 {A13R:U -> A12R:G: adjacent_3p } 0 6 {A12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B9R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B8R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B8R:A -> B9R:C: adjacent_5p upward } 0 11 {B9R:C -> B8R:A: adjacent_3p downward } 0 12 {B9R:C -> B10R:C: adjacent_5p upward } 0 13 {B10R:C -> B9R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:U 0 2 A14R:U 0 3 B7R:A 0 4 B8R:A 0 5 B9R:C 0 [Edges] 0 {A12R:G -> A13R:U: adjacent_5p } 0 1 {A13R:U -> A12R:G: adjacent_3p } 0 2 {A12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:U -> A14R:U: adjacent_5p } 0 5 {A14R:U -> A13R:U: adjacent_3p } 0 6 {A13R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B8R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B7R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B7R:A -> B8R:A: adjacent_5p upward } 0 11 {B8R:A -> B7R:A: adjacent_3p downward } 0 12 {B8R:A -> B9R:C: adjacent_5p upward } 0 13 {B9R:C -> B8R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B2R:C 0 1 B3R:A 0 2 B4R:C 0 3 B16R:G 0 4 B17R:U 0 5 B18R:G 0 [Edges] 0 {B2R:C -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:C: adjacent_3p downward } 0 2 {B2R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B17R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B3R:A -> B18R:G: outward } 0 9 {B18R:G -> B3R:A: outward } 0 10 {B4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B16R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B16R:G -> B17R:U: adjacent_5p upward } 0 13 {B17R:U -> B16R:G: adjacent_3p downward } 0 14 {B17R:U -> B18R:G: adjacent_5p upward } 0 15 {B18R:G -> B17R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:C 0 2 B5R:C 0 3 B15R:G 0 4 B16R:G 0 5 B17R:U 0 [Edges] 0 {B3R:A -> B4R:C: adjacent_5p upward } 0 1 {B4R:C -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B17R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:C -> B5R:C: adjacent_5p } 0 5 {B5R:C -> B4R:C: adjacent_3p } 0 6 {B4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B15R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B5R:C -> B16R:G: outward } 0 11 {B16R:G -> B5R:C: outward } 0 12 {B15R:G -> B16R:G: adjacent_5p upward } 0 13 {B16R:G -> B15R:G: adjacent_3p downward } 0 14 {B16R:G -> B17R:U: adjacent_5p upward } 0 15 {B17R:U -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B4R:C 0 1 B5R:C 0 2 B6R:G 0 3 B14R:C 0 4 B15R:G 0 5 B16R:G 0 [Edges] 0 {B4R:C -> B5R:C: adjacent_5p } 0 1 {B5R:C -> B4R:C: adjacent_3p } 0 2 {B4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:G: adjacent_5p } 0 5 {B6R:G -> B5R:C: adjacent_3p } 0 6 {B5R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B15R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:C -> B16R:G: outward } 0 9 {B16R:G -> B5R:C: outward } 0 10 {B6R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B14R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B6R:G -> B15R:G: outward } 0 13 {B15R:G -> B6R:G: outward } 0 14 {B14R:C -> B15R:G: adjacent_5p } 0 15 {B15R:G -> B14R:C: adjacent_3p } 0 16 {B15R:G -> B16R:G: adjacent_5p upward } 0 17 {B16R:G -> B15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:A 0 2 4R:C 0 3 17R:G 0 4 18R:U 0 5 19R:C 0 [Edges] 0 {2R:G -> 3R:A: adjacent_5p upward } 0 1 {3R:A -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {19R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:A -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:A: adjacent_3p downward } 0 6 {3R:A -> 18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {18R:U -> 3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {17R:G -> 18R:U: adjacent_5p upward } 0 11 {18R:U -> 17R:G: adjacent_3p downward } 0 12 {18R:U -> 19R:C: adjacent_5p upward } 0 13 {19R:C -> 18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 3R:A 0 1 4R:C 0 2 5R:U 0 3 16R:A 0 4 17R:G 0 5 18R:U 0 [Edges] 0 {3R:A -> 4R:C: adjacent_5p upward } 0 1 {4R:C -> 3R:A: adjacent_3p downward } 0 2 {3R:A -> 18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {18R:U -> 3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {4R:C -> 5R:U: adjacent_5p } 0 5 {5R:U -> 4R:C: adjacent_3p } 0 6 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {16R:A -> 17R:G: adjacent_5p upward } 0 11 {17R:G -> 16R:A: adjacent_3p downward } 0 12 {17R:G -> 18R:U: adjacent_5p upward } 0 13 {18R:U -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 4R:C 0 1 5R:U 0 2 6R:A 0 3 15R:U 0 4 16R:A 0 5 17R:G 0 [Edges] 0 {4R:C -> 5R:U: adjacent_5p } 0 1 {5R:U -> 4R:C: adjacent_3p } 0 2 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:U -> 6R:A: adjacent_5p } 0 5 {6R:A -> 5R:U: adjacent_3p } 0 6 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {6R:A -> 16R:A: outward } 0 11 {16R:A -> 6R:A: outward } 0 12 {15R:U -> 16R:A: adjacent_5p upward } 0 13 {16R:A -> 15R:U: adjacent_3p downward } 0 14 {16R:A -> 17R:G: adjacent_5p upward } 0 15 {17R:G -> 16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 5R:U 0 1 6R:A 0 2 7R:G 0 3 14R:C 0 4 15R:U 0 5 16R:A 0 [Edges] 0 {5R:U -> 6R:A: adjacent_5p } 0 1 {6R:A -> 5R:U: adjacent_3p } 0 2 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {6R:A -> 7R:G: adjacent_5p upward } 0 5 {7R:G -> 6R:A: adjacent_3p downward } 0 6 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {6R:A -> 16R:A: outward } 0 9 {16R:A -> 6R:A: outward } 0 10 {7R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {14R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {14R:C -> 15R:U: adjacent_5p upward } 0 13 {15R:U -> 14R:C: adjacent_3p downward } 0 14 {15R:U -> 16R:A: adjacent_5p upward } 0 15 {16R:A -> 15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 6R:A 0 1 7R:G 0 2 8R:C 0 3 13R:G 0 4 14R:C 0 5 15R:U 0 [Edges] 0 {6R:A -> 7R:G: adjacent_5p upward } 0 1 {7R:G -> 6R:A: adjacent_3p downward } 0 2 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {7R:G -> 8R:C: adjacent_5p upward } 0 5 {8R:C -> 7R:G: adjacent_3p downward } 0 6 {7R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {14R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {8R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {13R:G -> 8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {13R:G -> 14R:C: adjacent_5p upward } 0 11 {14R:C -> 13R:G: adjacent_3p downward } 0 12 {14R:C -> 15R:U: adjacent_5p upward } 0 13 {15R:U -> 14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A21R:G 0 4 A22R:C 0 5 A23R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A21R:G -> A22R:C: adjacent_5p upward } 0 11 {A22R:C -> A21R:G: adjacent_3p downward } 0 12 {A22R:C -> A23R:C: adjacent_5p upward } 0 13 {A23R:C -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A20R:C 0 4 A21R:G 0 5 A22R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A4R:G -> A21R:G: outward } 0 11 {A21R:G -> A4R:G: outward } 0 12 {A20R:C -> A21R:G: adjacent_5p upward } 0 13 {A21R:G -> A20R:C: adjacent_3p downward } 0 14 {A21R:G -> A22R:C: adjacent_5p upward } 0 15 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 A19R:U 0 4 A20R:C 0 5 A21R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:G: outward } 0 9 {A21R:G -> A4R:G: outward } 0 10 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A19R:U -> A20R:C: adjacent_5p upward } 0 13 {A20R:C -> A19R:U: adjacent_3p downward } 0 14 {A20R:C -> A21R:G: adjacent_5p upward } 0 15 {A21R:G -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:U 0 3 A16R:A 0 4 A17R:U 0 5 A18R:C 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A16R:A -> A17R:U: adjacent_5p upward } 0 11 {A17R:U -> A16R:A: adjacent_3p downward } 0 12 {A17R:U -> A18R:C: adjacent_5p } 0 13 {A18R:C -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:U 0 2 A10R:G 0 3 A15R:A 0 4 A16R:A 0 5 A17R:U 0 [Edges] 0 {A8R:G -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:G -> A15R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {A15R:A -> A10R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A15R:A -> A16R:A: adjacent_5p upward } 0 11 {A16R:A -> A15R:A: adjacent_3p downward } 0 12 {A16R:A -> A17R:U: adjacent_5p upward } 0 13 {A17R:U -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A25R:G 0 4 A26R:C 0 5 A27R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A25R:G -> A26R:C: adjacent_5p upward } 0 11 {A26R:C -> A25R:G: adjacent_3p downward } 0 12 {A26R:C -> A27R:C: adjacent_5p upward } 0 13 {A27R:C -> A26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A24R:C 0 4 A25R:G 0 5 A26R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A24R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A4R:G -> A25R:G: outward } 0 11 {A25R:G -> A4R:G: outward } 0 12 {A24R:C -> A25R:G: adjacent_5p } 0 13 {A25R:G -> A24R:C: adjacent_3p } 0 14 {A25R:G -> A26R:C: adjacent_5p upward } 0 15 {A26R:C -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:C 0 3 A22R:G 0 4 A23R:U 0 5 A24R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:U: adjacent_3p downward } 0 6 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A22R:G -> A23R:U: adjacent_5p upward } 0 9 {A23R:U -> A22R:G: adjacent_3p downward } 0 10 {A23R:U -> A24R:C: adjacent_5p upward } 0 11 {A24R:C -> A23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:A 0 2 A10R:C 0 3 A17R:G 0 4 A18R:U 0 5 A19R:G 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A19R:G: outward } 0 9 {A19R:G -> A9R:A: outward } 0 10 {A10R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> A18R:U: adjacent_5p upward } 0 13 {A18R:U -> A17R:G: adjacent_3p downward } 0 14 {A18R:U -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:C 0 2 A11R:C 0 3 A16R:G 0 4 A17R:G 0 5 A18R:U 0 [Edges] 0 {A9R:A -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:G -> A17R:G: adjacent_5p upward } 0 11 {A17R:G -> A16R:G: adjacent_3p downward } 0 12 {A17R:G -> A18R:U: adjacent_5p upward } 0 13 {A18R:U -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:C 0 2 A12R:U 0 3 A15R:G 0 4 A16R:G 0 5 A17R:G 0 [Edges] 0 {A10R:C -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:U -> A15R:G: pairing parallel trans 87 Bs/Ww } 0 9 {A15R:G -> A12R:U: pairing parallel trans 87 Ww/Bs } 0 10 {A15R:G -> A16R:G: adjacent_5p outward } 0 11 {A16R:G -> A15R:G: adjacent_3p outward } 0 12 {A16R:G -> A17R:G: adjacent_5p upward } 0 13 {A17R:G -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:G 0 3 B102R:C 0 4 B103R:C 0 5 B104R:A 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B104R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B104R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> B103R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B103R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> B104R:A: outward } 0 9 {B104R:A -> A6R:G: outward } 0 10 {A7R:G -> B102R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B102R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B102R:C -> B103R:C: adjacent_5p } 0 13 {B103R:C -> B102R:C: adjacent_3p } 0 14 {B103R:C -> B104R:A: adjacent_5p upward } 0 15 {B104R:A -> B103R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 28R:C 0 1 29R:A 0 2 30R:G 0 3 40R:C 0 4 41R:U 0 5 42R:G 0 [Edges] 0 {28R:C -> 29R:A: adjacent_5p upward } 0 1 {29R:A -> 28R:C: adjacent_3p downward } 0 2 {28R:C -> 42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {42R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {29R:A -> 30R:G: adjacent_5p upward } 0 5 {30R:G -> 29R:A: adjacent_3p downward } 0 6 {29R:A -> 41R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {41R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {29R:A -> 42R:G: outward } 0 9 {42R:G -> 29R:A: outward } 0 10 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {40R:C -> 41R:U: adjacent_5p upward } 0 13 {41R:U -> 40R:C: adjacent_3p downward } 0 14 {41R:U -> 42R:G: adjacent_5p upward } 0 15 {42R:G -> 41R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 29R:A 0 1 30R:G 0 2 31R:A 0 3 39R:U 0 4 40R:C 0 5 41R:U 0 [Edges] 0 {29R:A -> 30R:G: adjacent_5p upward } 0 1 {30R:G -> 29R:A: adjacent_3p downward } 0 2 {29R:A -> 41R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {41R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {30R:G -> 31R:A: adjacent_5p upward } 0 5 {31R:A -> 30R:G: adjacent_3p downward } 0 6 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {31R:A -> 39R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {39R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {39R:U -> 40R:C: adjacent_5p upward } 0 11 {40R:C -> 39R:U: adjacent_3p downward } 0 12 {40R:C -> 41R:U: adjacent_5p upward } 0 13 {41R:U -> 40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 30R:G 0 1 31R:A 0 2 32R:C 0 3 38R:A 0 4 39R:U 0 5 40R:C 0 [Edges] 0 {30R:G -> 31R:A: adjacent_5p upward } 0 1 {31R:A -> 30R:G: adjacent_3p downward } 0 2 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {31R:A -> 32R:C: adjacent_5p upward } 0 5 {32R:C -> 31R:A: adjacent_3p downward } 0 6 {31R:A -> 39R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {39R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {32R:C -> 38R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 9 {38R:A -> 32R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 10 {38R:A -> 39R:U: adjacent_5p upward } 0 11 {39R:U -> 38R:A: adjacent_3p downward } 0 12 {39R:U -> 40R:C: adjacent_5p upward } 0 13 {40R:C -> 39R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 28R:C 0 1 29R:A 0 2 30R:G 0 3 40R:C 0 4 41R:U 0 5 42R:G 0 [Edges] 0 {28R:C -> 29R:A: adjacent_5p } 0 1 {29R:A -> 28R:C: adjacent_3p } 0 2 {28R:C -> 42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {42R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {29R:A -> 30R:G: adjacent_5p upward } 0 5 {30R:G -> 29R:A: adjacent_3p downward } 0 6 {29R:A -> 41R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {41R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {29R:A -> 42R:G: outward } 0 9 {42R:G -> 29R:A: outward } 0 10 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {30R:G -> 41R:U: outward } 0 13 {41R:U -> 30R:G: outward } 0 14 {40R:C -> 41R:U: adjacent_5p } 0 15 {41R:U -> 40R:C: adjacent_3p } 0 16 {41R:U -> 42R:G: adjacent_5p } 0 17 {42R:G -> 41R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . MOLECULE: [GraphModel] [Vertices] 0 B601R:G 0 1 B602R:G 0 2 B603R:A 0 3 B670R:U 0 4 B671R:C 0 5 B672R:C 0 [Edges] 0 {B601R:G -> B602R:G: adjacent_5p upward } 0 1 {B602R:G -> B601R:G: adjacent_3p downward } 0 2 {B601R:G -> B672R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B672R:C -> B601R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B602R:G -> B603R:A: adjacent_5p upward } 0 5 {B603R:A -> B602R:G: adjacent_3p downward } 0 6 {B602R:G -> B671R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B671R:C -> B602R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B603R:A -> B670R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B670R:U -> B603R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B670R:U -> B671R:C: adjacent_5p upward } 0 11 {B671R:C -> B670R:U: adjacent_3p downward } 0 12 {B671R:C -> B672R:C: adjacent_5p } 0 13 {B672R:C -> B671R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B602R:G 0 1 B603R:A 0 2 B604R:G 0 3 B669R:U 0 4 B670R:U 0 5 B671R:C 0 [Edges] 0 {B602R:G -> B603R:A: adjacent_5p upward } 0 1 {B603R:A -> B602R:G: adjacent_3p downward } 0 2 {B602R:G -> B671R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B671R:C -> B602R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B603R:A -> B604R:G: adjacent_5p upward } 0 5 {B604R:G -> B603R:A: adjacent_3p downward } 0 6 {B603R:A -> B670R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B670R:U -> B603R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {B669R:U -> B670R:U: adjacent_5p } 0 11 {B670R:U -> B669R:U: adjacent_3p } 0 12 {B670R:U -> B671R:C: adjacent_5p upward } 0 13 {B671R:C -> B670R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B603R:A 0 1 B604R:G 0 2 B605R:C 0 3 B668R:G 0 4 B669R:U 0 5 B670R:U 0 [Edges] 0 {B603R:A -> B604R:G: adjacent_5p upward } 0 1 {B604R:G -> B603R:A: adjacent_3p downward } 0 2 {B603R:A -> B670R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B670R:U -> B603R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B604R:G -> B605R:C: adjacent_5p upward } 0 5 {B605R:C -> B604R:G: adjacent_3p downward } 0 6 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B605R:C -> B668R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B668R:G -> B605R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B668R:G -> B669R:U: adjacent_5p upward } 0 11 {B669R:U -> B668R:G: adjacent_3p downward } 0 12 {B669R:U -> B670R:U: adjacent_5p } 0 13 {B670R:U -> B669R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B604R:G 0 1 B605R:C 0 2 B606R:G 0 3 B667R:C 0 4 B668R:G 0 5 B669R:U 0 [Edges] 0 {B604R:G -> B605R:C: adjacent_5p upward } 0 1 {B605R:C -> B604R:G: adjacent_3p downward } 0 2 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B605R:C -> B606R:G: adjacent_5p } 0 5 {B606R:G -> B605R:C: adjacent_3p } 0 6 {B605R:C -> B668R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B668R:G -> B605R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B606R:G -> B667R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B667R:C -> B606R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B606R:G -> B668R:G: outward } 0 11 {B668R:G -> B606R:G: outward } 0 12 {B667R:C -> B668R:G: adjacent_5p upward } 0 13 {B668R:G -> B667R:C: adjacent_3p downward } 0 14 {B668R:G -> B669R:U: adjacent_5p upward } 0 15 {B669R:U -> B668R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B605R:C 0 1 B606R:G 0 2 B607R:G 0 3 B666R:C 0 4 B667R:C 0 5 B668R:G 0 [Edges] 0 {B605R:C -> B606R:G: adjacent_5p } 0 1 {B606R:G -> B605R:C: adjacent_3p } 0 2 {B605R:C -> B668R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B668R:G -> B605R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B606R:G -> B607R:G: adjacent_5p upward } 0 5 {B607R:G -> B606R:G: adjacent_3p downward } 0 6 {B606R:G -> B667R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B667R:C -> B606R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B606R:G -> B668R:G: outward } 0 9 {B668R:G -> B606R:G: outward } 0 10 {B607R:G -> B666R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B666R:C -> B607R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B666R:C -> B667R:C: adjacent_5p upward } 0 13 {B667R:C -> B666R:C: adjacent_3p downward } 0 14 {B667R:C -> B668R:G: adjacent_5p upward } 0 15 {B668R:G -> B667R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B610R:G 0 1 B611R:U 0 2 B612R:U 0 3 B623R:A 0 4 B624R:A 0 5 B625R:U 0 [Edges] 0 {B610R:G -> B611R:U: adjacent_5p upward } 0 1 {B611R:U -> B610R:G: adjacent_3p downward } 0 2 {B610R:G -> B625R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B625R:U -> B610R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B611R:U -> B612R:U: adjacent_5p upward } 0 5 {B612R:U -> B611R:U: adjacent_3p downward } 0 6 {B611R:U -> B624R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B624R:A -> B611R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B612R:U -> B623R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B623R:A -> B612R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B623R:A -> B624R:A: adjacent_5p upward } 0 11 {B624R:A -> B623R:A: adjacent_3p downward } 0 12 {B624R:A -> B625R:U: adjacent_5p upward } 0 13 {B625R:U -> B624R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B611R:U 0 1 B612R:U 0 2 B613R:C 0 3 B622R:G 0 4 B623R:A 0 5 B624R:A 0 [Edges] 0 {B611R:U -> B612R:U: adjacent_5p upward } 0 1 {B612R:U -> B611R:U: adjacent_3p downward } 0 2 {B611R:U -> B624R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B624R:A -> B611R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B612R:U -> B613R:C: adjacent_5p upward } 0 5 {B613R:C -> B612R:U: adjacent_3p downward } 0 6 {B612R:U -> B623R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B623R:A -> B612R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B613R:C -> B622R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B622R:G -> B613R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B622R:G -> B623R:A: adjacent_5p upward } 0 11 {B623R:A -> B622R:G: adjacent_3p downward } 0 12 {B623R:A -> B624R:A: adjacent_5p upward } 0 13 {B624R:A -> B623R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B625R:U 0 1 B626R:A 0 2 B627R:C 0 3 B643R:G 0 4 B644R:G 0 5 B645R:G 0 [Edges] 0 {B625R:U -> B626R:A: adjacent_5p upward } 0 1 {B626R:A -> B625R:U: adjacent_3p downward } 0 2 {B625R:U -> B645R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {B645R:G -> B625R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {B626R:A -> B627R:C: adjacent_5p upward } 0 5 {B627R:C -> B626R:A: adjacent_3p downward } 0 6 {B626R:A -> B644R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B644R:G -> B626R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {B627R:C -> B643R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B643R:G -> B627R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B643R:G -> B644R:G: adjacent_5p upward } 0 11 {B644R:G -> B643R:G: adjacent_3p downward } 0 12 {B644R:G -> B645R:G: adjacent_5p upward } 0 13 {B645R:G -> B644R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B626R:A 0 1 B627R:C 0 2 B628R:C 0 3 B642R:G 0 4 B643R:G 0 5 B644R:G 0 [Edges] 0 {B626R:A -> B627R:C: adjacent_5p upward } 0 1 {B627R:C -> B626R:A: adjacent_3p downward } 0 2 {B626R:A -> B644R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B644R:G -> B626R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {B627R:C -> B628R:C: adjacent_5p upward } 0 5 {B628R:C -> B627R:C: adjacent_3p downward } 0 6 {B627R:C -> B643R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B643R:G -> B627R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B642R:G -> B643R:G: adjacent_5p upward } 0 11 {B643R:G -> B642R:G: adjacent_3p downward } 0 12 {B643R:G -> B644R:G: adjacent_5p upward } 0 13 {B644R:G -> B643R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B627R:C 0 1 B628R:C 0 2 B629R:U 0 3 B641R:A 0 4 B642R:G 0 5 B643R:G 0 [Edges] 0 {B627R:C -> B628R:C: adjacent_5p upward } 0 1 {B628R:C -> B627R:C: adjacent_3p downward } 0 2 {B627R:C -> B643R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B643R:G -> B627R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B628R:C -> B629R:U: adjacent_5p upward } 0 5 {B629R:U -> B628R:C: adjacent_3p downward } 0 6 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B641R:A -> B642R:G: adjacent_5p upward } 0 11 {B642R:G -> B641R:A: adjacent_3p downward } 0 12 {B642R:G -> B643R:G: adjacent_5p upward } 0 13 {B643R:G -> B642R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B628R:C 0 1 B629R:U 0 2 B630R:G 0 3 B640R:C 0 4 B641R:A 0 5 B642R:G 0 [Edges] 0 {B628R:C -> B629R:U: adjacent_5p upward } 0 1 {B629R:U -> B628R:C: adjacent_3p downward } 0 2 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B629R:U -> B630R:G: adjacent_5p } 0 5 {B630R:G -> B629R:U: adjacent_3p } 0 6 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B630R:G -> B640R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B640R:C -> B630R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B630R:G -> B641R:A: outward } 0 11 {B641R:A -> B630R:G: outward } 0 12 {B640R:C -> B641R:A: adjacent_5p upward } 0 13 {B641R:A -> B640R:C: adjacent_3p downward } 0 14 {B641R:A -> B642R:G: adjacent_5p upward } 0 15 {B642R:G -> B641R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B629R:U 0 1 B630R:G 0 2 B631R:C 0 3 B639R:G 0 4 B640R:C 0 5 B641R:A 0 [Edges] 0 {B629R:U -> B630R:G: adjacent_5p } 0 1 {B630R:G -> B629R:U: adjacent_3p } 0 2 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B630R:G -> B631R:C: adjacent_5p upward } 0 5 {B631R:C -> B630R:G: adjacent_3p downward } 0 6 {B630R:G -> B640R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B640R:C -> B630R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B630R:G -> B641R:A: outward } 0 9 {B641R:A -> B630R:G: outward } 0 10 {B631R:C -> B639R:G: pairing antiparallel cis Ww/Ww } 0 11 {B639R:G -> B631R:C: pairing antiparallel cis Ww/Ww } 0 12 {B639R:G -> B640R:C: adjacent_5p upward } 0 13 {B640R:C -> B639R:G: adjacent_3p downward } 0 14 {B640R:C -> B641R:A: adjacent_5p upward } 0 15 {B641R:A -> B640R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B630R:G 0 1 B631R:C 0 2 B632R:C 0 3 B638R:C 0 4 B639R:G 0 5 B640R:C 0 [Edges] 0 {B630R:G -> B631R:C: adjacent_5p upward } 0 1 {B631R:C -> B630R:G: adjacent_3p downward } 0 2 {B630R:G -> B640R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B640R:C -> B630R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B631R:C -> B632R:C: adjacent_5p upward } 0 5 {B632R:C -> B631R:C: adjacent_3p downward } 0 6 {B631R:C -> B639R:G: pairing antiparallel cis Ww/Ww } 0 7 {B639R:G -> B631R:C: pairing antiparallel cis Ww/Ww } 0 8 {B632R:C -> B638R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 9 {B638R:C -> B632R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 10 {B638R:C -> B639R:G: adjacent_5p upward } 0 11 {B639R:G -> B638R:C: adjacent_3p downward } 0 12 {B639R:G -> B640R:C: adjacent_5p upward } 0 13 {B640R:C -> B639R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B650R:C 0 1 B651R:G 0 2 B652R:G 0 3 B662R:C 0 4 B663R:C 0 5 B664R:G 0 [Edges] 0 {B650R:C -> B651R:G: adjacent_5p upward } 0 1 {B651R:G -> B650R:C: adjacent_3p downward } 0 2 {B650R:C -> B664R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B664R:G -> B650R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B651R:G -> B652R:G: adjacent_5p upward } 0 5 {B652R:G -> B651R:G: adjacent_3p downward } 0 6 {B651R:G -> B663R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B663R:C -> B651R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B651R:G -> B664R:G: outward } 0 9 {B664R:G -> B651R:G: outward } 0 10 {B652R:G -> B662R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B662R:C -> B652R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B662R:C -> B663R:C: adjacent_5p upward } 0 13 {B663R:C -> B662R:C: adjacent_3p downward } 0 14 {B663R:C -> B664R:G: adjacent_5p upward } 0 15 {B664R:G -> B663R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B651R:G 0 1 B652R:G 0 2 B653R:G 0 3 B661R:C 0 4 B662R:C 0 5 B663R:C 0 [Edges] 0 {B651R:G -> B652R:G: adjacent_5p upward } 0 1 {B652R:G -> B651R:G: adjacent_3p downward } 0 2 {B651R:G -> B663R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B663R:C -> B651R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B652R:G -> B653R:G: adjacent_5p upward } 0 5 {B653R:G -> B652R:G: adjacent_3p downward } 0 6 {B652R:G -> B662R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B662R:C -> B652R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B653R:G -> B661R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B661R:C -> B653R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B661R:C -> B662R:C: adjacent_5p } 0 11 {B662R:C -> B661R:C: adjacent_3p } 0 12 {B662R:C -> B663R:C: adjacent_5p upward } 0 13 {B663R:C -> B662R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:U 0 3 A11R:G 0 4 A12R:U 0 5 A13R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A12R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:U -> A11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {A11R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {A11R:G -> A12R:U: adjacent_5p upward } 0 11 {A12R:U -> A11R:G: adjacent_3p downward } 0 12 {A12R:U -> A13R:C: adjacent_5p upward } 0 13 {A13R:C -> A12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:C 0 3 A10R:G 0 4 A11R:G 0 5 A12R:U 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A12R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A4R:U -> A5R:C: adjacent_5p } 0 5 {A5R:C -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A11R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A10R:G -> A11R:G: adjacent_5p upward } 0 11 {A11R:G -> A10R:G: adjacent_3p downward } 0 12 {A11R:G -> A12R:U: adjacent_5p upward } 0 13 {A12R:U -> A11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 B15R:G 0 4 B16R:U 0 5 B17R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B16R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B15R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B15R:G -> B16R:U: adjacent_5p upward } 0 11 {B16R:U -> B15R:G: adjacent_3p downward } 0 12 {B16R:U -> B17R:C: adjacent_5p } 0 13 {B17R:C -> B16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:C 0 3 B13R:G 0 4 B14R:C 0 5 B15R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:U: adjacent_3p downward } 0 6 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B13R:G -> B14R:C: adjacent_5p upward } 0 9 {B14R:C -> B13R:G: adjacent_3p downward } 0 10 {B14R:C -> B15R:G: adjacent_5p upward } 0 11 {B15R:G -> B14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:A 0 2 A8R:G 0 3 B11R:C 0 4 B12R:U 0 5 B13R:G 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p } 0 1 {A7R:A -> A6R:C: adjacent_3p } 0 2 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:A -> B13R:G: outward } 0 9 {B13R:G -> A7R:A: outward } 0 10 {A8R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B11R:C -> B12R:U: adjacent_5p upward } 0 13 {B12R:U -> B11R:C: adjacent_3p downward } 0 14 {B12R:U -> B13R:G: adjacent_5p upward } 0 15 {B13R:G -> B12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:A 0 2 A8R:C 0 3 A62R:G 0 4 A63R:U 0 5 A64R:C 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A64R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A63R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A63R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:C -> A62R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A62R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A62R:G -> A63R:U: adjacent_5p upward } 0 11 {A63R:U -> A62R:G: adjacent_3p downward } 0 12 {A63R:U -> A64R:C: adjacent_5p upward } 0 13 {A64R:C -> A63R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:C 0 2 A9R:C 0 3 A61R:G 0 4 A62R:G 0 5 A63R:U 0 [Edges] 0 {A7R:A -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A63R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A63R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:C -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A62R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A62R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A61R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A61R:G -> A62R:G: adjacent_5p upward } 0 11 {A62R:G -> A61R:G: adjacent_3p downward } 0 12 {A62R:G -> A63R:U: adjacent_5p upward } 0 13 {A63R:U -> A62R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:C 0 2 A10R:G 0 3 A60R:U 0 4 A61R:G 0 5 A62R:G 0 [Edges] 0 {A8R:C -> A9R:C: adjacent_5p } 0 1 {A9R:C -> A8R:C: adjacent_3p } 0 2 {A8R:C -> A62R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A62R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:C -> A10R:G: adjacent_5p } 0 5 {A10R:G -> A9R:C: adjacent_3p } 0 6 {A9R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A61R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> A60R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A60R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A10R:G -> A61R:G: outward } 0 11 {A61R:G -> A10R:G: outward } 0 12 {A60R:U -> A61R:G: adjacent_5p } 0 13 {A61R:G -> A60R:U: adjacent_3p } 0 14 {A61R:G -> A62R:G: adjacent_5p upward } 0 15 {A62R:G -> A61R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:U 0 2 A15R:G 0 3 A52R:C 0 4 A53R:G 0 5 A54R:C 0 [Edges] 0 {A13R:G -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A54R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:U -> A15R:G: adjacent_5p } 0 5 {A15R:G -> A14R:U: adjacent_3p } 0 6 {A14R:U -> A53R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A53R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A15R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A52R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A15R:G -> A53R:G: outward } 0 11 {A53R:G -> A15R:G: outward } 0 12 {A52R:C -> A53R:G: adjacent_5p upward } 0 13 {A53R:G -> A52R:C: adjacent_3p downward } 0 14 {A53R:G -> A54R:C: adjacent_5p upward } 0 15 {A54R:C -> A53R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:G 0 2 A16R:U 0 3 A51R:A 0 4 A52R:C 0 5 A53R:G 0 [Edges] 0 {A14R:U -> A15R:G: adjacent_5p } 0 1 {A15R:G -> A14R:U: adjacent_3p } 0 2 {A14R:U -> A53R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A53R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A15R:G -> A16R:U: adjacent_5p upward } 0 5 {A16R:U -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A52R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A53R:G: outward } 0 9 {A53R:G -> A15R:G: outward } 0 10 {A16R:U -> A51R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A51R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A51R:A -> A52R:C: adjacent_5p upward } 0 13 {A52R:C -> A51R:A: adjacent_3p downward } 0 14 {A52R:C -> A53R:G: adjacent_5p upward } 0 15 {A53R:G -> A52R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:U 0 2 A17R:C 0 3 A50R:G 0 4 A51R:A 0 5 A52R:C 0 [Edges] 0 {A15R:G -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A52R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:C: adjacent_5p upward } 0 5 {A17R:C -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A51R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A51R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A17R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A50R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A50R:G -> A51R:A: adjacent_5p upward } 0 11 {A51R:A -> A50R:G: adjacent_3p downward } 0 12 {A51R:A -> A52R:C: adjacent_5p upward } 0 13 {A52R:C -> A51R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A16R:U 0 1 A17R:C 0 2 A18R:G 0 3 A21R:A 0 4 A50R:G 0 5 A51R:A 0 [Edges] 0 {A16R:U -> A17R:C: adjacent_5p upward } 0 1 {A17R:C -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A51R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A51R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A17R:C -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:C: adjacent_3p downward } 0 6 {A17R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A50R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:G -> A21R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {A21R:A -> A18R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A18R:G -> A50R:G: outward } 0 11 {A50R:G -> A18R:G: outward } 0 12 {A21R:A -> A50R:G: adjacent_5p } 0 13 {A50R:G -> A21R:A: adjacent_3p } 0 14 {A50R:G -> A51R:A: adjacent_5p upward } 0 15 {A51R:A -> A50R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A40R:C 0 4 A41R:G 0 5 A42R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A40R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A4R:G -> A41R:G: outward } 0 11 {A41R:G -> A4R:G: outward } 0 12 {A40R:C -> A41R:G: adjacent_5p upward } 0 13 {A41R:G -> A40R:C: adjacent_3p downward } 0 14 {A41R:G -> A42R:C: adjacent_5p upward } 0 15 {A42R:C -> A41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A39R:G 0 4 A40R:C 0 5 A41R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A41R:G: outward } 0 9 {A41R:G -> A4R:G: outward } 0 10 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A39R:G -> A40R:C: adjacent_5p upward } 0 13 {A40R:C -> A39R:G: adjacent_3p downward } 0 14 {A40R:C -> A41R:G: adjacent_5p upward } 0 15 {A41R:G -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:U 0 3 A38R:G 0 4 A39R:G 0 5 A40R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A40R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:U: adjacent_3p } 0 6 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A38R:G: pairing antiparallel trans one_hbond Ww/Hw } 0 9 {A38R:G -> A6R:U: pairing antiparallel trans one_hbond Hw/Ww } 0 10 {A38R:G -> A39R:G: adjacent_5p upward } 0 11 {A39R:G -> A38R:G: adjacent_3p downward } 0 12 {A39R:G -> A40R:C: adjacent_5p upward } 0 13 {A40R:C -> A39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:G 0 2 A13R:G 0 3 A34R:C 0 4 A35R:C 0 5 A36R:A 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> A36R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 3 {A36R:A -> A11R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A35R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A34R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A34R:C -> A35R:C: adjacent_5p upward } 0 11 {A35R:C -> A34R:C: adjacent_3p downward } 0 12 {A35R:C -> A36R:A: adjacent_5p upward } 0 13 {A36R:A -> A35R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:U 0 3 A33R:G 0 4 A34R:C 0 5 A35R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A34R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {A33R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {A33R:G -> A34R:C: adjacent_5p upward } 0 11 {A34R:C -> A33R:G: adjacent_3p downward } 0 12 {A34R:C -> A35R:C: adjacent_5p upward } 0 13 {A35R:C -> A34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:U 0 2 A15R:C 0 3 A32R:A 0 4 A33R:G 0 5 A34R:C 0 [Edges] 0 {A13R:G -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:U -> A15R:C: adjacent_5p upward } 0 5 {A15R:C -> A14R:U: adjacent_3p downward } 0 6 {A14R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A33R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A15R:C -> A32R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 9 {A32R:A -> A15R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 10 {A32R:A -> A33R:G: adjacent_5p upward } 0 11 {A33R:G -> A32R:A: adjacent_3p downward } 0 12 {A33R:G -> A34R:C: adjacent_5p upward } 0 13 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:U 0 2 A20R:C 0 3 A27R:G 0 4 A28R:A 0 5 A29R:A 0 [Edges] 0 {A18R:G -> A19R:U: adjacent_5p upward } 0 1 {A19R:U -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A29R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A19R:U -> A20R:C: adjacent_5p upward } 0 5 {A20R:C -> A19R:U: adjacent_3p downward } 0 6 {A19R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A20R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A27R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A27R:G -> A28R:A: adjacent_5p upward } 0 11 {A28R:A -> A27R:G: adjacent_3p downward } 0 12 {A28R:A -> A29R:A: adjacent_5p upward } 0 13 {A29R:A -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:C 0 2 A21R:C 0 3 A26R:G 0 4 A27R:G 0 5 A28R:A 0 [Edges] 0 {A19R:U -> A20R:C: adjacent_5p upward } 0 1 {A20R:C -> A19R:U: adjacent_3p downward } 0 2 {A19R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A28R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A20R:C -> A21R:C: adjacent_5p upward } 0 5 {A21R:C -> A20R:C: adjacent_3p downward } 0 6 {A20R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A26R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A26R:G -> A27R:G: adjacent_5p upward } 0 11 {A27R:G -> A26R:G: adjacent_3p downward } 0 12 {A27R:G -> A28R:A: adjacent_5p upward } 0 13 {A28R:A -> A27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:C 0 2 A22R:G 0 3 A25R:A 0 4 A26R:G 0 5 A27R:G 0 [Edges] 0 {A20R:C -> A21R:C: adjacent_5p upward } 0 1 {A21R:C -> A20R:C: adjacent_3p downward } 0 2 {A20R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:C -> A22R:G: adjacent_5p upward } 0 5 {A22R:G -> A21R:C: adjacent_3p downward } 0 6 {A21R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A22R:G -> A25R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 9 {A25R:A -> A22R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 10 {A25R:A -> A26R:G: adjacent_5p upward } 0 11 {A26R:G -> A25R:A: adjacent_3p downward } 0 12 {A26R:G -> A27R:G: adjacent_5p upward } 0 13 {A27R:G -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A44R:A 0 1 A45R:C 0 2 A46R:G 0 3 B74R:C 0 4 B75R:G 0 5 B76R:U 0 [Edges] 0 {A44R:A -> A45R:C: adjacent_5p upward } 0 1 {A45R:C -> A44R:A: adjacent_3p downward } 0 2 {A44R:A -> B76R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B76R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A45R:C -> A46R:G: adjacent_5p upward } 0 5 {A46R:G -> A45R:C: adjacent_3p downward } 0 6 {A45R:C -> B75R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B75R:G -> A45R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A46R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B74R:C -> A46R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A46R:G -> B75R:G: outward } 0 11 {B75R:G -> A46R:G: outward } 0 12 {B74R:C -> B75R:G: adjacent_5p upward } 0 13 {B75R:G -> B74R:C: adjacent_3p downward } 0 14 {B75R:G -> B76R:U: adjacent_5p upward } 0 15 {B76R:U -> B75R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A45R:C 0 1 A46R:G 0 2 A47R:G 0 3 B73R:A 0 4 B74R:C 0 5 B75R:G 0 [Edges] 0 {A45R:C -> A46R:G: adjacent_5p upward } 0 1 {A46R:G -> A45R:C: adjacent_3p downward } 0 2 {A45R:C -> B75R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B75R:G -> A45R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A46R:G -> A47R:G: adjacent_5p upward } 0 5 {A47R:G -> A46R:G: adjacent_3p downward } 0 6 {A46R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B74R:C -> A46R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A46R:G -> B75R:G: outward } 0 9 {B75R:G -> A46R:G: outward } 0 10 {A47R:G -> B73R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {B73R:A -> B74R:C: adjacent_5p upward } 0 13 {B74R:C -> B73R:A: adjacent_3p downward } 0 14 {B74R:C -> B75R:G: adjacent_5p upward } 0 15 {B75R:G -> B74R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A48R:G 0 1 A49R:C 0 2 A50R:G 0 3 B69R:C 0 4 B70R:G 0 5 B71R:G 0 [Edges] 0 {A48R:G -> A49R:C: adjacent_5p upward } 0 1 {A49R:C -> A48R:G: adjacent_3p downward } 0 2 {A48R:G -> B71R:G: pairing parallel cis VI Ww/Hh } 0 3 {B71R:G -> A48R:G: pairing parallel cis VI Hh/Ww } 0 4 {A49R:C -> A50R:G: adjacent_5p upward } 0 5 {A50R:G -> A49R:C: adjacent_3p downward } 0 6 {A49R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B70R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A50R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A50R:G -> B70R:G: outward } 0 11 {B70R:G -> A50R:G: outward } 0 12 {B69R:C -> B70R:G: adjacent_5p upward } 0 13 {B70R:G -> B69R:C: adjacent_3p downward } 0 14 {B70R:G -> B71R:G: adjacent_5p inward } 0 15 {B71R:G -> B70R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A51R:C 0 1 A52R:A 0 2 A53R:G 0 3 B65R:C 0 4 B66R:U 0 5 B67R:G 0 [Edges] 0 {A51R:C -> A52R:A: adjacent_5p upward } 0 1 {A52R:A -> A51R:C: adjacent_3p downward } 0 2 {A51R:C -> B67R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A52R:A -> A53R:G: adjacent_5p upward } 0 5 {A53R:G -> A52R:A: adjacent_3p downward } 0 6 {A52R:A -> B66R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B66R:U -> A52R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A52R:A -> B67R:G: outward } 0 9 {B67R:G -> A52R:A: outward } 0 10 {A53R:G -> B65R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B65R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B65R:C -> B66R:U: adjacent_5p upward } 0 13 {B66R:U -> B65R:C: adjacent_3p downward } 0 14 {B66R:U -> B67R:G: adjacent_5p upward } 0 15 {B67R:G -> B66R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 B102R:G 0 1 B103R:C 0 2 B104R:C 0 3 B134R:G 0 4 B135R:G 0 5 B136R:C 0 [Edges] 0 {B102R:G -> B103R:C: adjacent_5p upward } 0 1 {B103R:C -> B102R:G: adjacent_3p downward } 0 2 {B102R:G -> B136R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B136R:C -> B102R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B103R:C -> B104R:C: adjacent_5p upward } 0 5 {B104R:C -> B103R:C: adjacent_3p downward } 0 6 {B103R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B135R:G -> B103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B104R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B134R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B134R:G -> B135R:G: adjacent_5p upward } 0 11 {B135R:G -> B134R:G: adjacent_3p downward } 0 12 {B135R:G -> B136R:C: adjacent_5p upward } 0 13 {B136R:C -> B135R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B103R:C 0 1 B104R:C 0 2 B105R:G 0 3 B133R:C 0 4 B134R:G 0 5 B135R:G 0 [Edges] 0 {B103R:C -> B104R:C: adjacent_5p upward } 0 1 {B104R:C -> B103R:C: adjacent_3p downward } 0 2 {B103R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B135R:G -> B103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B104R:C -> B105R:G: adjacent_5p } 0 5 {B105R:G -> B104R:C: adjacent_3p } 0 6 {B104R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B134R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B105R:G -> B133R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B133R:C -> B105R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B105R:G -> B134R:G: outward } 0 11 {B134R:G -> B105R:G: outward } 0 12 {B133R:C -> B134R:G: adjacent_5p upward } 0 13 {B134R:G -> B133R:C: adjacent_3p downward } 0 14 {B134R:G -> B135R:G: adjacent_5p upward } 0 15 {B135R:G -> B134R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B104R:C 0 1 B105R:G 0 2 B106R:G 0 3 B132R:C 0 4 B133R:C 0 5 B134R:G 0 [Edges] 0 {B104R:C -> B105R:G: adjacent_5p } 0 1 {B105R:G -> B104R:C: adjacent_3p } 0 2 {B104R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B134R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B105R:G -> B106R:G: adjacent_5p upward } 0 5 {B106R:G -> B105R:G: adjacent_3p downward } 0 6 {B105R:G -> B133R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B133R:C -> B105R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B105R:G -> B134R:G: outward } 0 9 {B134R:G -> B105R:G: outward } 0 10 {B106R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B132R:C -> B106R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B132R:C -> B133R:C: adjacent_5p } 0 13 {B133R:C -> B132R:C: adjacent_3p } 0 14 {B133R:C -> B134R:G: adjacent_5p upward } 0 15 {B134R:G -> B133R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B105R:G 0 1 B106R:G 0 2 B107R:C 0 3 B131R:G 0 4 B132R:C 0 5 B133R:C 0 [Edges] 0 {B105R:G -> B106R:G: adjacent_5p upward } 0 1 {B106R:G -> B105R:G: adjacent_3p downward } 0 2 {B105R:G -> B133R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B133R:C -> B105R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B106R:G -> B107R:C: adjacent_5p upward } 0 5 {B107R:C -> B106R:G: adjacent_3p downward } 0 6 {B106R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B132R:C -> B106R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B107R:C -> B131R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B131R:G -> B107R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B131R:G -> B132R:C: adjacent_5p upward } 0 11 {B132R:C -> B131R:G: adjacent_3p downward } 0 12 {B132R:C -> B133R:C: adjacent_5p } 0 13 {B133R:C -> B132R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B111R:G 0 1 B112R:U 0 2 B113R:C 0 3 B170R:G 0 4 B171R:A 0 5 B172R:C 0 [Edges] 0 {B111R:G -> B112R:U: adjacent_5p upward } 0 1 {B112R:U -> B111R:G: adjacent_3p downward } 0 2 {B111R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B172R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B112R:U -> B113R:C: adjacent_5p upward } 0 5 {B113R:C -> B112R:U: adjacent_3p downward } 0 6 {B112R:U -> B171R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B171R:A -> B112R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B113R:C -> B170R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B170R:G -> B113R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B170R:G -> B171R:A: adjacent_5p upward } 0 11 {B171R:A -> B170R:G: adjacent_3p downward } 0 12 {B171R:A -> B172R:C: adjacent_5p upward } 0 13 {B172R:C -> B171R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B112R:U 0 1 B113R:C 0 2 B114R:C 0 3 B169R:G 0 4 B170R:G 0 5 B171R:A 0 [Edges] 0 {B112R:U -> B113R:C: adjacent_5p upward } 0 1 {B113R:C -> B112R:U: adjacent_3p downward } 0 2 {B112R:U -> B171R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B171R:A -> B112R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B113R:C -> B114R:C: adjacent_5p } 0 5 {B114R:C -> B113R:C: adjacent_3p } 0 6 {B113R:C -> B170R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B170R:G -> B113R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B114R:C -> B169R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B169R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B169R:G -> B170R:G: adjacent_5p upward } 0 11 {B170R:G -> B169R:G: adjacent_3p downward } 0 12 {B170R:G -> B171R:A: adjacent_5p upward } 0 13 {B171R:A -> B170R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B113R:C 0 1 B114R:C 0 2 B115R:C 0 3 B168R:G 0 4 B169R:G 0 5 B170R:G 0 [Edges] 0 {B113R:C -> B114R:C: adjacent_5p } 0 1 {B114R:C -> B113R:C: adjacent_3p } 0 2 {B113R:C -> B170R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B170R:G -> B113R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B114R:C -> B115R:C: adjacent_5p upward } 0 5 {B115R:C -> B114R:C: adjacent_3p downward } 0 6 {B114R:C -> B169R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B169R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B115R:C -> B168R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B168R:G -> B115R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B168R:G -> B169R:G: adjacent_5p upward } 0 11 {B169R:G -> B168R:G: adjacent_3p downward } 0 12 {B169R:G -> B170R:G: adjacent_5p upward } 0 13 {B170R:G -> B169R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B114R:C 0 1 B115R:C 0 2 B116R:A 0 3 B167R:U 0 4 B168R:G 0 5 B169R:G 0 [Edges] 0 {B114R:C -> B115R:C: adjacent_5p upward } 0 1 {B115R:C -> B114R:C: adjacent_3p downward } 0 2 {B114R:C -> B169R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B169R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B115R:C -> B116R:A: adjacent_5p upward } 0 5 {B116R:A -> B115R:C: adjacent_3p downward } 0 6 {B115R:C -> B168R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B168R:G -> B115R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B116R:A -> B167R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B167R:U -> B116R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B116R:A -> B168R:G: outward } 0 11 {B168R:G -> B116R:A: outward } 0 12 {B167R:U -> B168R:G: adjacent_5p } 0 13 {B168R:G -> B167R:U: adjacent_3p } 0 14 {B168R:G -> B169R:G: adjacent_5p upward } 0 15 {B169R:G -> B168R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B117R:G 0 1 B118R:C 0 2 B119R:C 0 3 B128R:G 0 4 B129R:G 0 5 B130R:C 0 [Edges] 0 {B117R:G -> B118R:C: adjacent_5p upward } 0 1 {B118R:C -> B117R:G: adjacent_3p downward } 0 2 {B117R:G -> B130R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B130R:C -> B117R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B118R:C -> B119R:C: adjacent_5p upward } 0 5 {B119R:C -> B118R:C: adjacent_3p downward } 0 6 {B118R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B129R:G -> B118R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B119R:C -> B128R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B128R:G -> B119R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B128R:G -> B129R:G: adjacent_5p upward } 0 11 {B129R:G -> B128R:G: adjacent_3p downward } 0 12 {B129R:G -> B130R:C: adjacent_5p upward } 0 13 {B130R:C -> B129R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B143R:A 0 1 B144R:C 0 2 B145R:A 0 3 B160R:U 0 4 B161R:G 0 5 B162R:G 0 [Edges] 0 {B143R:A -> B144R:C: adjacent_5p upward } 0 1 {B144R:C -> B143R:A: adjacent_3p downward } 0 2 {B143R:A -> B162R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B162R:G -> B143R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {B144R:C -> B145R:A: adjacent_5p upward } 0 5 {B145R:A -> B144R:C: adjacent_3p downward } 0 6 {B144R:C -> B161R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B161R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B145R:A -> B160R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B160R:U -> B145R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B145R:A -> B161R:G: outward } 0 11 {B161R:G -> B145R:A: outward } 0 12 {B160R:U -> B161R:G: adjacent_5p upward } 0 13 {B161R:G -> B160R:U: adjacent_3p downward } 0 14 {B161R:G -> B162R:G: adjacent_5p upward } 0 15 {B162R:G -> B161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B144R:C 0 1 B145R:A 0 2 B146R:C 0 3 B159R:G 0 4 B160R:U 0 5 B161R:G 0 [Edges] 0 {B144R:C -> B145R:A: adjacent_5p upward } 0 1 {B145R:A -> B144R:C: adjacent_3p downward } 0 2 {B144R:C -> B161R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B161R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B145R:A -> B146R:C: adjacent_5p upward } 0 5 {B146R:C -> B145R:A: adjacent_3p downward } 0 6 {B145R:A -> B160R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B160R:U -> B145R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B145R:A -> B161R:G: outward } 0 9 {B161R:G -> B145R:A: outward } 0 10 {B146R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B159R:G -> B146R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B159R:G -> B160R:U: adjacent_5p upward } 0 13 {B160R:U -> B159R:G: adjacent_3p downward } 0 14 {B160R:U -> B161R:G: adjacent_5p upward } 0 15 {B161R:G -> B160R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B145R:A 0 1 B146R:C 0 2 B147R:C 0 3 B158R:G 0 4 B159R:G 0 5 B160R:U 0 [Edges] 0 {B145R:A -> B146R:C: adjacent_5p upward } 0 1 {B146R:C -> B145R:A: adjacent_3p downward } 0 2 {B145R:A -> B160R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B160R:U -> B145R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B146R:C -> B147R:C: adjacent_5p upward } 0 5 {B147R:C -> B146R:C: adjacent_3p downward } 0 6 {B146R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B159R:G -> B146R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B147R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B158R:G -> B147R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B158R:G -> B159R:G: adjacent_5p upward } 0 11 {B159R:G -> B158R:G: adjacent_3p downward } 0 12 {B159R:G -> B160R:U: adjacent_5p upward } 0 13 {B160R:U -> B159R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A18R:U 0 4 A19R:C 0 5 A20R:U 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A20R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A18R:U -> A19R:C: adjacent_5p upward } 0 11 {A19R:C -> A18R:U: adjacent_3p downward } 0 12 {A19R:C -> A20R:U: adjacent_5p upward } 0 13 {A20R:U -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:U 0 3 A17R:A 0 4 A18R:U 0 5 A19R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A17R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A17R:A -> A18R:U: adjacent_5p upward } 0 11 {A18R:U -> A17R:A: adjacent_3p downward } 0 12 {A18R:U -> A19R:C: adjacent_5p upward } 0 13 {A19R:C -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:U 0 2 A6R:C 0 3 A16R:G 0 4 A17R:A 0 5 A18R:U 0 [Edges] 0 {A4R:A -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A17R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:G -> A17R:A: adjacent_5p upward } 0 11 {A17R:A -> A16R:G: adjacent_3p downward } 0 12 {A17R:A -> A18R:U: adjacent_5p upward } 0 13 {A18R:U -> A17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 B25R:C 0 4 B26R:A 0 5 B27R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A4R:G -> B26R:A: outward } 0 11 {B26R:A -> A4R:G: outward } 0 12 {B25R:C -> B26R:A: adjacent_5p upward } 0 13 {B26R:A -> B25R:C: adjacent_3p downward } 0 14 {B26R:A -> B27R:C: adjacent_5p upward } 0 15 {B27R:C -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:A 0 3 B24R:C 0 4 B25R:C 0 5 B26R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B26R:A: outward } 0 9 {B26R:A -> A4R:G: outward } 0 10 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {B24R:C -> B25R:C: adjacent_5p } 0 13 {B25R:C -> B24R:C: adjacent_3p } 0 14 {B25R:C -> B26R:A: adjacent_5p upward } 0 15 {B26R:A -> B25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 B23R:A 0 4 B24R:C 0 5 B25R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 9 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 10 {B23R:A -> B24R:C: adjacent_5p upward } 0 11 {B24R:C -> B23R:A: adjacent_3p downward } 0 12 {B24R:C -> B25R:C: adjacent_5p } 0 13 {B25R:C -> B24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:C 0 3 B22R:G 0 4 B23R:A 0 5 B24R:C 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A6R:C -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 7 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 8 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B22R:G -> B23R:A: adjacent_5p upward } 0 11 {B23R:A -> B22R:G: adjacent_3p downward } 0 12 {B23R:A -> B24R:C: adjacent_5p upward } 0 13 {B24R:C -> B23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:U 0 3 B21R:G 0 4 B22R:G 0 5 B23R:A 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {A7R:C -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B21R:G -> B22R:G: adjacent_5p upward } 0 11 {B22R:G -> B21R:G: adjacent_3p downward } 0 12 {B22R:G -> B23R:A: adjacent_5p upward } 0 13 {B23R:A -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:C 0 3 B20R:G 0 4 B21R:G 0 5 B22R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:U: adjacent_3p } 0 6 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B20R:G -> B21R:G: adjacent_5p upward } 0 11 {B21R:G -> B20R:G: adjacent_3p downward } 0 12 {B21R:G -> B22R:G: adjacent_5p upward } 0 13 {B22R:G -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:C 0 2 A10R:C 0 3 B19R:G 0 4 B20R:G 0 5 B21R:G 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p } 0 1 {A9R:C -> A8R:U: adjacent_3p } 0 2 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A9R:C -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B19R:G -> B20R:G: adjacent_5p upward } 0 11 {B20R:G -> B19R:G: adjacent_3p downward } 0 12 {B20R:G -> B21R:G: adjacent_5p upward } 0 13 {B21R:G -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:C 0 2 A11R:C 0 3 B18R:G 0 4 B19R:G 0 5 B20R:G 0 [Edges] 0 {A9R:C -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B18R:G -> B19R:G: adjacent_5p upward } 0 11 {B19R:G -> B18R:G: adjacent_3p downward } 0 12 {B19R:G -> B20R:G: adjacent_5p upward } 0 13 {B20R:G -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:C 0 2 A12R:G 0 3 B17R:C 0 4 B18R:G 0 5 B19R:G 0 [Edges] 0 {A10R:C -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A12R:G -> B18R:G: outward } 0 11 {B18R:G -> A12R:G: outward } 0 12 {B17R:C -> B18R:G: adjacent_5p } 0 13 {B18R:G -> B17R:C: adjacent_3p } 0 14 {B18R:G -> B19R:G: adjacent_5p upward } 0 15 {B19R:G -> B18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:G 0 3 B16R:G 0 4 B17R:C 0 5 B18R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:G: adjacent_3p } 0 6 {A12R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B18R:G: outward } 0 9 {B18R:G -> A12R:G: outward } 0 10 {A13R:G -> B16R:G: pairing antiparallel trans 115 Bh/Ww } 0 11 {B16R:G -> A13R:G: pairing antiparallel trans 115 Ww/Bh } 0 12 {B16R:G -> B17R:C: adjacent_5p upward } 0 13 {B17R:C -> B16R:G: adjacent_3p downward } 0 14 {B17R:C -> B18R:G: adjacent_5p } 0 15 {B18R:G -> B17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:G 0 3 B15R:A 0 4 B16R:G 0 5 B17R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:G: adjacent_3p } 0 2 {A12R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:G: adjacent_5p upward } 0 5 {A14R:G -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B16R:G: pairing antiparallel trans 115 Bh/Ww } 0 7 {B16R:G -> A13R:G: pairing antiparallel trans 115 Ww/Bh } 0 8 {A14R:G -> B15R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {B15R:A -> A14R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {B15R:A -> B16R:G: adjacent_5p upward } 0 11 {B16R:G -> B15R:A: adjacent_3p downward } 0 12 {B16R:G -> B17R:C: adjacent_5p upward } 0 13 {B17R:C -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:A 0 2 A16R:G 0 3 B13R:G 0 4 B14R:G 0 5 B15R:A 0 [Edges] 0 {A14R:G -> A15R:A: adjacent_5p upward } 0 1 {A15R:A -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> B15R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B15R:A -> A14R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A15R:A -> A16R:G: adjacent_5p upward } 0 5 {A16R:G -> A15R:A: adjacent_3p downward } 0 6 {A16R:G -> B13R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {B13R:G -> A16R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {B13R:G -> B14R:G: adjacent_5p upward } 0 9 {B14R:G -> B13R:G: adjacent_3p downward } 0 10 {B14R:G -> B15R:A: adjacent_5p upward } 0 11 {B15R:A -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A16R:G 0 1 A17R:C 0 2 A18R:G 0 3 B11R:C 0 4 B12R:G 0 5 B13R:G 0 [Edges] 0 {A16R:G -> A17R:C: adjacent_5p upward } 0 1 {A17R:C -> A16R:G: adjacent_3p downward } 0 2 {A16R:G -> B13R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {B13R:G -> A16R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {A17R:C -> A18R:G: adjacent_5p } 0 5 {A18R:G -> A17R:C: adjacent_3p } 0 6 {A17R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A18R:G -> B12R:G: outward } 0 11 {B12R:G -> A18R:G: outward } 0 12 {B11R:C -> B12R:G: adjacent_5p } 0 13 {B12R:G -> B11R:C: adjacent_3p } 0 14 {B12R:G -> B13R:G: adjacent_5p } 0 15 {B13R:G -> B12R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:G 0 2 A19R:G 0 3 B10R:C 0 4 B11R:C 0 5 B12R:G 0 [Edges] 0 {A17R:C -> A18R:G: adjacent_5p } 0 1 {A18R:G -> A17R:C: adjacent_3p } 0 2 {A17R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:G -> A19R:G: adjacent_5p upward } 0 5 {A19R:G -> A18R:G: adjacent_3p downward } 0 6 {A18R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:G -> B12R:G: outward } 0 9 {B12R:G -> A18R:G: outward } 0 10 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B10R:C -> B11R:C: adjacent_5p upward } 0 13 {B11R:C -> B10R:C: adjacent_3p downward } 0 14 {B11R:C -> B12R:G: adjacent_5p } 0 15 {B12R:G -> B11R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:G 0 2 A20R:G 0 3 B9R:C 0 4 B10R:C 0 5 B11R:C 0 [Edges] 0 {A18R:G -> A19R:G: adjacent_5p upward } 0 1 {A19R:G -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:G -> A20R:G: adjacent_5p upward } 0 5 {A20R:G -> A19R:G: adjacent_3p downward } 0 6 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B9R:C -> B10R:C: adjacent_5p } 0 11 {B10R:C -> B9R:C: adjacent_3p } 0 12 {B10R:C -> B11R:C: adjacent_5p upward } 0 13 {B11R:C -> B10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:G 0 2 A21R:G 0 3 B8R:U 0 4 B9R:C 0 5 B10R:C 0 [Edges] 0 {A19R:G -> A20R:G: adjacent_5p upward } 0 1 {A20R:G -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:G -> A21R:G: adjacent_5p upward } 0 5 {A21R:G -> A20R:G: adjacent_3p downward } 0 6 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A21R:G -> B9R:C: outward } 0 11 {B9R:C -> A21R:G: outward } 0 12 {B8R:U -> B9R:C: adjacent_5p } 0 13 {B9R:C -> B8R:U: adjacent_3p } 0 14 {B9R:C -> B10R:C: adjacent_5p } 0 15 {B10R:C -> B9R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A20R:G 0 1 A21R:G 0 2 A22R:G 0 3 B7R:C 0 4 B8R:U 0 5 B9R:C 0 [Edges] 0 {A20R:G -> A21R:G: adjacent_5p upward } 0 1 {A21R:G -> A20R:G: adjacent_3p downward } 0 2 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:G -> A22R:G: adjacent_5p upward } 0 5 {A22R:G -> A21R:G: adjacent_3p downward } 0 6 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A21R:G -> B9R:C: outward } 0 9 {B9R:C -> A21R:G: outward } 0 10 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B7R:C -> B8R:U: adjacent_5p upward } 0 13 {B8R:U -> B7R:C: adjacent_3p downward } 0 14 {B8R:U -> B9R:C: adjacent_5p } 0 15 {B9R:C -> B8R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A23R:A 0 3 B6R:C 0 4 B7R:C 0 5 B8R:U 0 [Edges] 0 {A21R:G -> A22R:G: adjacent_5p upward } 0 1 {A22R:G -> A21R:G: adjacent_3p downward } 0 2 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A22R:G -> A23R:A: adjacent_5p upward } 0 5 {A23R:A -> A22R:G: adjacent_3p downward } 0 6 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 9 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 10 {B6R:C -> B7R:C: adjacent_5p } 0 11 {B7R:C -> B6R:C: adjacent_3p } 0 12 {B7R:C -> B8R:U: adjacent_5p upward } 0 13 {B8R:U -> B7R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:A 0 2 A24R:C 0 3 B5R:A 0 4 B6R:C 0 5 B7R:C 0 [Edges] 0 {A22R:G -> A23R:A: adjacent_5p upward } 0 1 {A23R:A -> A22R:G: adjacent_3p downward } 0 2 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A23R:A -> A24R:C: adjacent_5p upward } 0 5 {A24R:C -> A23R:A: adjacent_3p downward } 0 6 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 9 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 10 {B5R:A -> B6R:C: adjacent_5p upward } 0 11 {B6R:C -> B5R:A: adjacent_3p downward } 0 12 {B6R:C -> B7R:C: adjacent_5p } 0 13 {B7R:C -> B6R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:C 0 2 A25R:C 0 3 B4R:G 0 4 B5R:A 0 5 B6R:C 0 [Edges] 0 {A23R:A -> A24R:C: adjacent_5p upward } 0 1 {A24R:C -> A23R:A: adjacent_3p downward } 0 2 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A24R:C -> A25R:C: adjacent_5p } 0 5 {A25R:C -> A24R:C: adjacent_3p } 0 6 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {A25R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B4R:G -> B5R:A: adjacent_5p upward } 0 11 {B5R:A -> B4R:G: adjacent_3p downward } 0 12 {B5R:A -> B6R:C: adjacent_5p upward } 0 13 {B6R:C -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A24R:C 0 1 A25R:C 0 2 A26R:A 0 3 B3R:U 0 4 B4R:G 0 5 B5R:A 0 [Edges] 0 {A24R:C -> A25R:C: adjacent_5p } 0 1 {A25R:C -> A24R:C: adjacent_3p } 0 2 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A25R:C -> A26R:A: adjacent_5p upward } 0 5 {A26R:A -> A25R:C: adjacent_3p downward } 0 6 {A25R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A26R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B3R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A26R:A -> B4R:G: outward } 0 11 {B4R:G -> A26R:A: outward } 0 12 {B3R:U -> B4R:G: adjacent_5p upward } 0 13 {B4R:G -> B3R:U: adjacent_3p downward } 0 14 {B4R:G -> B5R:A: adjacent_5p upward } 0 15 {B5R:A -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A25R:C 0 1 A26R:A 0 2 A27R:C 0 3 B2R:G 0 4 B3R:U 0 5 B4R:G 0 [Edges] 0 {A25R:C -> A26R:A: adjacent_5p upward } 0 1 {A26R:A -> A25R:C: adjacent_3p downward } 0 2 {A25R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A26R:A -> A27R:C: adjacent_5p upward } 0 5 {A27R:C -> A26R:A: adjacent_3p downward } 0 6 {A26R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B3R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A26R:A -> B4R:G: outward } 0 9 {B4R:G -> A26R:A: outward } 0 10 {A27R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B2R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B2R:G -> B3R:U: adjacent_5p upward } 0 13 {B3R:U -> B2R:G: adjacent_3p downward } 0 14 {B3R:U -> B4R:G: adjacent_5p upward } 0 15 {B4R:G -> B3R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 B268R:G 0 1 B269R:A 0 2 B270R:C 0 3 B306R:G 0 4 B307R:U 0 5 B308R:C 0 [Edges] 0 {B268R:G -> B269R:A: adjacent_5p upward } 0 1 {B269R:A -> B268R:G: adjacent_3p downward } 0 2 {B268R:G -> B308R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B308R:C -> B268R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B269R:A -> B270R:C: adjacent_5p upward } 0 5 {B270R:C -> B269R:A: adjacent_3p downward } 0 6 {B269R:A -> B307R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B307R:U -> B269R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B270R:C -> B306R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B306R:G -> B270R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B306R:G -> B307R:U: adjacent_5p upward } 0 11 {B307R:U -> B306R:G: adjacent_3p downward } 0 12 {B307R:U -> B308R:C: adjacent_5p upward } 0 13 {B308R:C -> B307R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B269R:A 0 1 B270R:C 0 2 B271R:C 0 3 B305R:G 0 4 B306R:G 0 5 B307R:U 0 [Edges] 0 {B269R:A -> B270R:C: adjacent_5p upward } 0 1 {B270R:C -> B269R:A: adjacent_3p downward } 0 2 {B269R:A -> B307R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B307R:U -> B269R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B270R:C -> B271R:C: adjacent_5p upward } 0 5 {B271R:C -> B270R:C: adjacent_3p downward } 0 6 {B270R:C -> B306R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B306R:G -> B270R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B305R:G -> B306R:G: adjacent_5p upward } 0 11 {B306R:G -> B305R:G: adjacent_3p downward } 0 12 {B306R:G -> B307R:U: adjacent_5p upward } 0 13 {B307R:U -> B306R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B270R:C 0 1 B271R:C 0 2 B272R:G 0 3 B304R:A 0 4 B305R:G 0 5 B306R:G 0 [Edges] 0 {B270R:C -> B271R:C: adjacent_5p upward } 0 1 {B271R:C -> B270R:C: adjacent_3p downward } 0 2 {B270R:C -> B306R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B306R:G -> B270R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B271R:C -> B272R:G: adjacent_5p upward } 0 5 {B272R:G -> B271R:C: adjacent_3p downward } 0 6 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B272R:G -> B304R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {B304R:A -> B272R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {B304R:A -> B305R:G: adjacent_5p upward } 0 11 {B305R:G -> B304R:A: adjacent_3p downward } 0 12 {B305R:G -> B306R:G: adjacent_5p upward } 0 13 {B306R:G -> B305R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B271R:C 0 1 B272R:G 0 2 B273R:A 0 3 B303R:U 0 4 B304R:A 0 5 B305R:G 0 [Edges] 0 {B271R:C -> B272R:G: adjacent_5p upward } 0 1 {B272R:G -> B271R:C: adjacent_3p downward } 0 2 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B272R:G -> B273R:A: adjacent_5p } 0 5 {B273R:A -> B272R:G: adjacent_3p } 0 6 {B272R:G -> B304R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {B304R:A -> B272R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {B273R:A -> B303R:U: pairing antiparallel trans XXIV Hh/Ws } 0 9 {B303R:U -> B273R:A: pairing antiparallel trans XXIV Ws/Hh } 0 10 {B273R:A -> B304R:A: outward } 0 11 {B304R:A -> B273R:A: outward } 0 12 {B303R:U -> B304R:A: adjacent_5p upward } 0 13 {B304R:A -> B303R:U: adjacent_3p downward } 0 14 {B304R:A -> B305R:G: adjacent_5p upward } 0 15 {B305R:G -> B304R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B272R:G 0 1 B273R:A 0 2 B274R:U 0 3 B302R:G 0 4 B303R:U 0 5 B304R:A 0 [Edges] 0 {B272R:G -> B273R:A: adjacent_5p } 0 1 {B273R:A -> B272R:G: adjacent_3p } 0 2 {B272R:G -> B304R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {B304R:A -> B272R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {B273R:A -> B274R:U: adjacent_5p upward } 0 5 {B274R:U -> B273R:A: adjacent_3p downward } 0 6 {B273R:A -> B303R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {B303R:U -> B273R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {B273R:A -> B304R:A: outward } 0 9 {B304R:A -> B273R:A: outward } 0 10 {B274R:U -> B302R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 11 {B302R:G -> B274R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 12 {B302R:G -> B303R:U: adjacent_5p upward } 0 13 {B303R:U -> B302R:G: adjacent_3p downward } 0 14 {B303R:U -> B304R:A: adjacent_5p upward } 0 15 {B304R:A -> B303R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B274R:U 0 1 B275R:G 0 2 B276R:G 0 3 B300R:G 0 4 B301R:A 0 5 B302R:G 0 [Edges] 0 {B274R:U -> B275R:G: adjacent_5p upward } 0 1 {B275R:G -> B274R:U: adjacent_3p downward } 0 2 {B274R:U -> B302R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 3 {B302R:G -> B274R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 4 {B275R:G -> B276R:G: adjacent_5p upward } 0 5 {B276R:G -> B275R:G: adjacent_3p downward } 0 6 {B276R:G -> B300R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {B300R:G -> B276R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {B300R:G -> B301R:A: adjacent_5p upward } 0 9 {B301R:A -> B300R:G: adjacent_3p downward } 0 10 {B301R:A -> B302R:G: adjacent_5p upward } 0 11 {B302R:G -> B301R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 B276R:G 0 1 B277R:U 0 2 B278R:A 0 3 B298R:G 0 4 B299R:A 0 5 B300R:G 0 [Edges] 0 {B276R:G -> B277R:U: adjacent_5p upward } 0 1 {B277R:U -> B276R:G: adjacent_3p downward } 0 2 {B276R:G -> B300R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {B300R:G -> B276R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {B277R:U -> B278R:A: adjacent_5p upward } 0 5 {B278R:A -> B277R:U: adjacent_3p downward } 0 6 {B277R:U -> B299R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {B299R:A -> B277R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {B278R:A -> B298R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {B298R:G -> B278R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {B278R:A -> B299R:A: outward } 0 11 {B299R:A -> B278R:A: outward } 0 12 {B298R:G -> B299R:A: adjacent_5p } 0 13 {B299R:A -> B298R:G: adjacent_3p } 0 14 {B299R:A -> B300R:G: adjacent_5p upward } 0 15 {B300R:G -> B299R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B277R:U 0 1 B278R:A 0 2 B279R:G 0 3 B297R:C 0 4 B298R:G 0 5 B299R:A 0 [Edges] 0 {B277R:U -> B278R:A: adjacent_5p upward } 0 1 {B278R:A -> B277R:U: adjacent_3p downward } 0 2 {B277R:U -> B299R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {B299R:A -> B277R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {B278R:A -> B279R:G: adjacent_5p upward } 0 5 {B279R:G -> B278R:A: adjacent_3p downward } 0 6 {B278R:A -> B298R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {B298R:G -> B278R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {B278R:A -> B299R:A: outward } 0 9 {B299R:A -> B278R:A: outward } 0 10 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B297R:C -> B298R:G: adjacent_5p } 0 13 {B298R:G -> B297R:C: adjacent_3p } 0 14 {B298R:G -> B299R:A: adjacent_5p } 0 15 {B299R:A -> B298R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B278R:A 0 1 B279R:G 0 2 B280R:U 0 3 B296R:G 0 4 B297R:C 0 5 B298R:G 0 [Edges] 0 {B278R:A -> B279R:G: adjacent_5p upward } 0 1 {B279R:G -> B278R:A: adjacent_3p downward } 0 2 {B278R:A -> B298R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {B298R:G -> B278R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B279R:G -> B280R:U: adjacent_5p upward } 0 5 {B280R:U -> B279R:G: adjacent_3p downward } 0 6 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B296R:G -> B297R:C: adjacent_5p upward } 0 11 {B297R:C -> B296R:G: adjacent_3p downward } 0 12 {B297R:C -> B298R:G: adjacent_5p } 0 13 {B298R:G -> B297R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B279R:G 0 1 B280R:U 0 2 B281R:G 0 3 B295R:U 0 4 B296R:G 0 5 B297R:C 0 [Edges] 0 {B279R:G -> B280R:U: adjacent_5p upward } 0 1 {B280R:U -> B279R:G: adjacent_3p downward } 0 2 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B280R:U -> B281R:G: adjacent_5p } 0 5 {B281R:G -> B280R:U: adjacent_3p } 0 6 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {B281R:G -> B296R:G: outward } 0 11 {B296R:G -> B281R:G: outward } 0 12 {B295R:U -> B296R:G: adjacent_5p } 0 13 {B296R:G -> B295R:U: adjacent_3p } 0 14 {B296R:G -> B297R:C: adjacent_5p upward } 0 15 {B297R:C -> B296R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B280R:U 0 1 B281R:G 0 2 B282R:U 0 3 B294R:A 0 4 B295R:U 0 5 B296R:G 0 [Edges] 0 {B280R:U -> B281R:G: adjacent_5p } 0 1 {B281R:G -> B280R:U: adjacent_3p } 0 2 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B281R:G -> B282R:U: adjacent_5p upward } 0 5 {B282R:U -> B281R:G: adjacent_3p downward } 0 6 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B281R:G -> B296R:G: outward } 0 9 {B296R:G -> B281R:G: outward } 0 10 {B282R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B294R:A -> B282R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B294R:A -> B295R:U: adjacent_5p upward } 0 13 {B295R:U -> B294R:A: adjacent_3p downward } 0 14 {B295R:U -> B296R:G: adjacent_5p } 0 15 {B296R:G -> B295R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B281R:G 0 1 B282R:U 0 2 B283R:C 0 3 B293R:G 0 4 B294R:A 0 5 B295R:U 0 [Edges] 0 {B281R:G -> B282R:U: adjacent_5p upward } 0 1 {B282R:U -> B281R:G: adjacent_3p downward } 0 2 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B282R:U -> B283R:C: adjacent_5p upward } 0 5 {B283R:C -> B282R:U: adjacent_3p downward } 0 6 {B282R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B294R:A -> B282R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B283R:C -> B293R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B293R:G -> B283R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B293R:G -> B294R:A: adjacent_5p upward } 0 11 {B294R:A -> B293R:G: adjacent_3p downward } 0 12 {B294R:A -> B295R:U: adjacent_5p upward } 0 13 {B295R:U -> B294R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B282R:U 0 1 B283R:C 0 2 B284R:U 0 3 B292R:G 0 4 B293R:G 0 5 B294R:A 0 [Edges] 0 {B282R:U -> B283R:C: adjacent_5p upward } 0 1 {B283R:C -> B282R:U: adjacent_3p downward } 0 2 {B282R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B294R:A -> B282R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B283R:C -> B284R:U: adjacent_5p upward } 0 5 {B284R:U -> B283R:C: adjacent_3p downward } 0 6 {B283R:C -> B293R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B293R:G -> B283R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B284R:U -> B292R:G: pairing parallel trans one_hbond Ss/Ws } 0 9 {B292R:G -> B284R:U: pairing parallel trans one_hbond Ws/Ss } 0 10 {B292R:G -> B293R:G: adjacent_5p } 0 11 {B293R:G -> B292R:G: adjacent_3p } 0 12 {B293R:G -> B294R:A: adjacent_5p upward } 0 13 {B294R:A -> B293R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:U 0 3 A20R:A 0 4 A21R:C 0 5 A22R:C 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A20R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A20R:A -> A21R:C: adjacent_5p upward } 0 11 {A21R:C -> A20R:A: adjacent_3p downward } 0 12 {A21R:C -> A22R:C: adjacent_5p upward } 0 13 {A22R:C -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:A 0 3 A31R:A 0 4 A32R:G 0 5 A33R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:A: adjacent_5p inward } 0 5 {A14R:A -> A13R:C: adjacent_3p inward } 0 6 {A13R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A32R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A31R:A: pairing parallel trans I Ww/Ww } 0 9 {A31R:A -> A14R:A: pairing parallel trans I Ww/Ww } 0 10 {A31R:A -> A32R:G: adjacent_5p upward } 0 11 {A32R:G -> A31R:A: adjacent_3p downward } 0 12 {A32R:G -> A33R:C: adjacent_5p upward } 0 13 {A33R:C -> A32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C207R:G 0 1 C208R:G 0 2 C209R:U 0 3 C220R:A 0 4 C221R:C 0 5 C222R:C 0 [Edges] 0 {C207R:G -> C208R:G: adjacent_5p upward } 0 1 {C208R:G -> C207R:G: adjacent_3p downward } 0 2 {C207R:G -> C222R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C222R:C -> C207R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C208R:G -> C209R:U: adjacent_5p upward } 0 5 {C209R:U -> C208R:G: adjacent_3p downward } 0 6 {C208R:G -> C221R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C221R:C -> C208R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C209R:U -> C220R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C220R:A -> C209R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C220R:A -> C221R:C: adjacent_5p upward } 0 11 {C221R:C -> C220R:A: adjacent_3p downward } 0 12 {C221R:C -> C222R:C: adjacent_5p } 0 13 {C222R:C -> C221R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C212R:G 0 1 C213R:C 0 2 C214R:A 0 3 C231R:A 0 4 C232R:G 0 5 C233R:C 0 [Edges] 0 {C212R:G -> C213R:C: adjacent_5p upward } 0 1 {C213R:C -> C212R:G: adjacent_3p downward } 0 2 {C212R:G -> C233R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C233R:C -> C212R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C213R:C -> C214R:A: adjacent_5p inward } 0 5 {C214R:A -> C213R:C: adjacent_3p inward } 0 6 {C213R:C -> C232R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C232R:G -> C213R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C214R:A -> C231R:A: pairing parallel trans I Ww/Ww } 0 9 {C231R:A -> C214R:A: pairing parallel trans I Ww/Ww } 0 10 {C231R:A -> C232R:G: adjacent_5p upward } 0 11 {C232R:G -> C231R:A: adjacent_3p downward } 0 12 {C232R:G -> C233R:C: adjacent_5p upward } 0 13 {C233R:C -> C232R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 E407R:G 0 1 E408R:G 0 2 E409R:U 0 3 E420R:A 0 4 E421R:C 0 5 E422R:C 0 [Edges] 0 {E407R:G -> E408R:G: adjacent_5p upward } 0 1 {E408R:G -> E407R:G: adjacent_3p downward } 0 2 {E407R:G -> E422R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E422R:C -> E407R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E408R:G -> E409R:U: adjacent_5p upward } 0 5 {E409R:U -> E408R:G: adjacent_3p downward } 0 6 {E408R:G -> E421R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E421R:C -> E408R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E409R:U -> E420R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {E420R:A -> E409R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {E420R:A -> E421R:C: adjacent_5p upward } 0 11 {E421R:C -> E420R:A: adjacent_3p downward } 0 12 {E421R:C -> E422R:C: adjacent_5p upward } 0 13 {E422R:C -> E421R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 E412R:G 0 1 E413R:C 0 2 E414R:A 0 3 E431R:A 0 4 E432R:G 0 5 E433R:C 0 [Edges] 0 {E412R:G -> E413R:C: adjacent_5p upward } 0 1 {E413R:C -> E412R:G: adjacent_3p downward } 0 2 {E412R:G -> E433R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E433R:C -> E412R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E413R:C -> E414R:A: adjacent_5p inward } 0 5 {E414R:A -> E413R:C: adjacent_3p inward } 0 6 {E413R:C -> E432R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E432R:G -> E413R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E414R:A -> E431R:A: pairing parallel trans I Ww/Ww } 0 9 {E431R:A -> E414R:A: pairing parallel trans I Ww/Ww } 0 10 {E431R:A -> E432R:G: adjacent_5p upward } 0 11 {E432R:G -> E431R:A: adjacent_3p downward } 0 12 {E432R:G -> E433R:C: adjacent_5p upward } 0 13 {E433R:C -> E432R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 G607R:G 0 1 G608R:G 0 2 G609R:U 0 3 G620R:A 0 4 G621R:C 0 5 G622R:C 0 [Edges] 0 {G607R:G -> G608R:G: adjacent_5p upward } 0 1 {G608R:G -> G607R:G: adjacent_3p downward } 0 2 {G607R:G -> G622R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {G622R:C -> G607R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G608R:G -> G609R:U: adjacent_5p upward } 0 5 {G609R:U -> G608R:G: adjacent_3p downward } 0 6 {G608R:G -> G621R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {G621R:C -> G608R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G609R:U -> G620R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {G620R:A -> G609R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {G620R:A -> G621R:C: adjacent_5p upward } 0 11 {G621R:C -> G620R:A: adjacent_3p downward } 0 12 {G621R:C -> G622R:C: adjacent_5p upward } 0 13 {G622R:C -> G621R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 G612R:G 0 1 G613R:C 0 2 G614R:A 0 3 G631R:A 0 4 G632R:G 0 5 G633R:C 0 [Edges] 0 {G612R:G -> G613R:C: adjacent_5p upward } 0 1 {G613R:C -> G612R:G: adjacent_3p downward } 0 2 {G612R:G -> G633R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {G633R:C -> G612R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G613R:C -> G614R:A: adjacent_5p inward } 0 5 {G614R:A -> G613R:C: adjacent_3p inward } 0 6 {G613R:C -> G632R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {G632R:G -> G613R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G614R:A -> G631R:A: pairing parallel trans one_hbond Ww/Ww } 0 9 {G631R:A -> G614R:A: pairing parallel trans one_hbond Ww/Ww } 0 10 {G631R:A -> G632R:G: adjacent_5p upward } 0 11 {G632R:G -> G631R:A: adjacent_3p downward } 0 12 {G632R:G -> G633R:C: adjacent_5p upward } 0 13 {G633R:C -> G632R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 M92R:C 0 1 M93R:C 0 2 M94R:A 0 3 N82R:U 0 4 N83R:G 0 5 N84R:G 0 [Edges] 0 {M92R:C -> M93R:C: adjacent_5p } 0 1 {M93R:C -> M92R:C: adjacent_3p } 0 2 {M92R:C -> N84R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {N84R:G -> M92R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {M93R:C -> M94R:A: adjacent_5p upward } 0 5 {M94R:A -> M93R:C: adjacent_3p downward } 0 6 {M93R:C -> N83R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {N83R:G -> M93R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {M94R:A -> N82R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {N82R:U -> M94R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {M94R:A -> N83R:G: outward } 0 11 {N83R:G -> M94R:A: outward } 0 12 {N82R:U -> N83R:G: adjacent_5p upward } 0 13 {N83R:G -> N82R:U: adjacent_3p downward } 0 14 {N83R:G -> N84R:G: adjacent_5p upward } 0 15 {N84R:G -> N83R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 M93R:C 0 1 M94R:A 0 2 M95R:U 0 3 N81R:G 0 4 N82R:U 0 5 N83R:G 0 [Edges] 0 {M93R:C -> M94R:A: adjacent_5p upward } 0 1 {M94R:A -> M93R:C: adjacent_3p downward } 0 2 {M93R:C -> N83R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {N83R:G -> M93R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {M94R:A -> M95R:U: adjacent_5p upward } 0 5 {M95R:U -> M94R:A: adjacent_3p downward } 0 6 {M94R:A -> N82R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {N82R:U -> M94R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {M94R:A -> N83R:G: outward } 0 9 {N83R:G -> M94R:A: outward } 0 10 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {N81R:G -> N82R:U: adjacent_5p upward } 0 13 {N82R:U -> N81R:G: adjacent_3p downward } 0 14 {N82R:U -> N83R:G: adjacent_5p upward } 0 15 {N83R:G -> N82R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 M94R:A 0 1 M95R:U 0 2 M96R:G 0 3 N80R:U 0 4 N81R:G 0 5 N82R:U 0 [Edges] 0 {M94R:A -> M95R:U: adjacent_5p upward } 0 1 {M95R:U -> M94R:A: adjacent_3p downward } 0 2 {M94R:A -> N82R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {N82R:U -> M94R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {M95R:U -> M96R:G: adjacent_5p } 0 5 {M96R:G -> M95R:U: adjacent_3p } 0 6 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {M96R:G -> N81R:G: outward } 0 11 {N81R:G -> M96R:G: outward } 0 12 {N80R:U -> N81R:G: adjacent_5p } 0 13 {N81R:G -> N80R:U: adjacent_3p } 0 14 {N81R:G -> N82R:U: adjacent_5p upward } 0 15 {N82R:U -> N81R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 M95R:U 0 1 M96R:G 0 2 M97R:C 0 3 N79R:G 0 4 N80R:U 0 5 N81R:G 0 [Edges] 0 {M95R:U -> M96R:G: adjacent_5p } 0 1 {M96R:G -> M95R:U: adjacent_3p } 0 2 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {M96R:G -> M97R:C: adjacent_5p upward } 0 5 {M97R:C -> M96R:G: adjacent_3p downward } 0 6 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {M96R:G -> N81R:G: outward } 0 9 {N81R:G -> M96R:G: outward } 0 10 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {N79R:G -> N80R:U: adjacent_5p upward } 0 13 {N80R:U -> N79R:G: adjacent_3p downward } 0 14 {N80R:U -> N81R:G: adjacent_5p } 0 15 {N81R:G -> N80R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 M96R:G 0 1 M97R:C 0 2 M98R:G 0 3 N78R:A 0 4 N79R:G 0 5 N80R:U 0 [Edges] 0 {M96R:G -> M97R:C: adjacent_5p upward } 0 1 {M97R:C -> M96R:G: adjacent_3p downward } 0 2 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {M97R:C -> M98R:G: adjacent_5p upward } 0 5 {M98R:G -> M97R:C: adjacent_3p downward } 0 6 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {N78R:A -> N79R:G: adjacent_5p upward } 0 11 {N79R:G -> N78R:A: adjacent_3p downward } 0 12 {N79R:G -> N80R:U: adjacent_5p upward } 0 13 {N80R:U -> N79R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 M97R:C 0 1 M98R:G 0 2 M99R:A 0 3 N77R:U 0 4 N78R:A 0 5 N79R:G 0 [Edges] 0 {M97R:C -> M98R:G: adjacent_5p upward } 0 1 {M98R:G -> M97R:C: adjacent_3p downward } 0 2 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {M98R:G -> M99R:A: adjacent_5p } 0 5 {M99R:A -> M98R:G: adjacent_3p } 0 6 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 9 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 10 {M99R:A -> N78R:A: outward } 0 11 {N78R:A -> M99R:A: outward } 0 12 {N77R:U -> N78R:A: adjacent_5p } 0 13 {N78R:A -> N77R:U: adjacent_3p } 0 14 {N78R:A -> N79R:G: adjacent_5p upward } 0 15 {N79R:G -> N78R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 M98R:G 0 1 M99R:A 0 2 M100R:G 0 3 N76R:G 0 4 N77R:U 0 5 N78R:A 0 [Edges] 0 {M98R:G -> M99R:A: adjacent_5p } 0 1 {M99R:A -> M98R:G: adjacent_3p } 0 2 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {M99R:A -> M100R:G: adjacent_5p upward } 0 5 {M100R:G -> M99R:A: adjacent_3p downward } 0 6 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {M99R:A -> N78R:A: outward } 0 9 {N78R:A -> M99R:A: outward } 0 10 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 11 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 12 {N76R:G -> N77R:U: adjacent_5p upward } 0 13 {N77R:U -> N76R:G: adjacent_3p downward } 0 14 {N77R:U -> N78R:A: adjacent_5p } 0 15 {N78R:A -> N77R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 M99R:A 0 1 M100R:G 0 2 M101R:A 0 3 N75R:G 0 4 N76R:G 0 5 N77R:U 0 [Edges] 0 {M99R:A -> M100R:G: adjacent_5p upward } 0 1 {M100R:G -> M99R:A: adjacent_3p downward } 0 2 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {M100R:G -> M101R:A: adjacent_5p upward } 0 5 {M101R:A -> M100R:G: adjacent_3p downward } 0 6 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 7 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 8 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {N75R:G -> N76R:G: adjacent_5p upward } 0 11 {N76R:G -> N75R:G: adjacent_3p downward } 0 12 {N76R:G -> N77R:U: adjacent_5p upward } 0 13 {N77R:U -> N76R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 M100R:G 0 1 M101R:A 0 2 M102R:G 0 3 N74R:U 0 4 N75R:G 0 5 N76R:G 0 [Edges] 0 {M100R:G -> M101R:A: adjacent_5p upward } 0 1 {M101R:A -> M100R:G: adjacent_3p downward } 0 2 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 3 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 4 {M101R:A -> M102R:G: adjacent_5p upward } 0 5 {M102R:G -> M101R:A: adjacent_3p downward } 0 6 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 9 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 10 {N74R:U -> N75R:G: adjacent_5p upward } 0 11 {N75R:G -> N74R:U: adjacent_3p downward } 0 12 {N75R:G -> N76R:G: adjacent_5p upward } 0 13 {N76R:G -> N75R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 M101R:A 0 1 M102R:G 0 2 M103R:U 0 3 N73R:A 0 4 N74R:U 0 5 N75R:G 0 [Edges] 0 {M101R:A -> M102R:G: adjacent_5p upward } 0 1 {M102R:G -> M101R:A: adjacent_3p downward } 0 2 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {M102R:G -> M103R:U: adjacent_5p upward } 0 5 {M103R:U -> M102R:G: adjacent_3p downward } 0 6 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 7 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 8 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {N73R:A -> N74R:U: adjacent_5p upward } 0 11 {N74R:U -> N73R:A: adjacent_3p downward } 0 12 {N74R:U -> N75R:G: adjacent_5p upward } 0 13 {N75R:G -> N74R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 M102R:G 0 1 M103R:U 0 2 M104R:A 0 3 N72R:G 0 4 N73R:A 0 5 N74R:U 0 [Edges] 0 {M102R:G -> M103R:U: adjacent_5p upward } 0 1 {M103R:U -> M102R:G: adjacent_3p downward } 0 2 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 3 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 4 {M103R:U -> M104R:A: adjacent_5p upward } 0 5 {M104R:A -> M103R:U: adjacent_3p downward } 0 6 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {M104R:A -> N72R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {N72R:G -> M104R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {M104R:A -> N73R:A: outward } 0 11 {N73R:A -> M104R:A: outward } 0 12 {N72R:G -> N73R:A: adjacent_5p } 0 13 {N73R:A -> N72R:G: adjacent_3p } 0 14 {N73R:A -> N74R:U: adjacent_5p upward } 0 15 {N74R:U -> N73R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 M103R:U 0 1 M104R:A 0 2 M105R:G 0 3 N71R:C 0 4 N72R:G 0 5 N73R:A 0 [Edges] 0 {M103R:U -> M104R:A: adjacent_5p upward } 0 1 {M104R:A -> M103R:U: adjacent_3p downward } 0 2 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {M104R:A -> M105R:G: adjacent_5p upward } 0 5 {M105R:G -> M104R:A: adjacent_3p downward } 0 6 {M104R:A -> N72R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {N72R:G -> M104R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {M104R:A -> N73R:A: outward } 0 9 {N73R:A -> M104R:A: outward } 0 10 {M105R:G -> N71R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {N71R:C -> M105R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {N71R:C -> N72R:G: adjacent_5p upward } 0 13 {N72R:G -> N71R:C: adjacent_3p downward } 0 14 {N72R:G -> N73R:A: adjacent_5p } 0 15 {N73R:A -> N72R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 M104R:A 0 1 M105R:G 0 2 M106R:G 0 3 N70R:C 0 4 N71R:C 0 5 N72R:G 0 [Edges] 0 {M104R:A -> M105R:G: adjacent_5p upward } 0 1 {M105R:G -> M104R:A: adjacent_3p downward } 0 2 {M104R:A -> N72R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {N72R:G -> M104R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {M105R:G -> M106R:G: adjacent_5p upward } 0 5 {M106R:G -> M105R:G: adjacent_3p downward } 0 6 {M105R:G -> N71R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {N71R:C -> M105R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {M106R:G -> N70R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {N70R:C -> M106R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {N70R:C -> N71R:C: adjacent_5p } 0 11 {N71R:C -> N70R:C: adjacent_3p } 0 12 {N71R:C -> N72R:G: adjacent_5p upward } 0 13 {N72R:G -> N71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:C 0 2 A6R:C 0 3 B13R:G 0 4 B14R:G 0 5 B15R:U 0 [Edges] 0 {A4R:A -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B13R:G -> B14R:G: adjacent_5p upward } 0 11 {B14R:G -> B13R:G: adjacent_3p downward } 0 12 {B14R:G -> B15R:U: adjacent_5p upward } 0 13 {B15R:U -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:C 0 3 B12R:G 0 4 B13R:G 0 5 B14R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B12R:G -> B13R:G: adjacent_5p upward } 0 11 {B13R:G -> B12R:G: adjacent_3p downward } 0 12 {B13R:G -> B14R:G: adjacent_5p upward } 0 13 {B14R:G -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:U 0 3 B11R:A 0 4 B12R:G 0 5 B13R:G 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B11R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B11R:A -> B12R:G: adjacent_5p upward } 0 11 {B12R:G -> B11R:A: adjacent_3p downward } 0 12 {B12R:G -> B13R:G: adjacent_5p upward } 0 13 {B13R:G -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B131R:G 0 1 B132R:C 0 2 B133R:U 0 3 B175R:A 0 4 B176R:G 0 5 B177R:C 0 [Edges] 0 {B131R:G -> B132R:C: adjacent_5p upward } 0 1 {B132R:C -> B131R:G: adjacent_3p downward } 0 2 {B131R:G -> B177R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B177R:C -> B131R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B132R:C -> B133R:U: adjacent_5p upward } 0 5 {B133R:U -> B132R:C: adjacent_3p downward } 0 6 {B132R:C -> B176R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B176R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B133R:U -> B175R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B175R:A -> B133R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B175R:A -> B176R:G: adjacent_5p upward } 0 11 {B176R:G -> B175R:A: adjacent_3p downward } 0 12 {B176R:G -> B177R:C: adjacent_5p upward } 0 13 {B177R:C -> B176R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B132R:C 0 1 B133R:U 0 2 B134R:C 0 3 B174R:G 0 4 B175R:A 0 5 B176R:G 0 [Edges] 0 {B132R:C -> B133R:U: adjacent_5p upward } 0 1 {B133R:U -> B132R:C: adjacent_3p downward } 0 2 {B132R:C -> B176R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B176R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B133R:U -> B134R:C: adjacent_5p upward } 0 5 {B134R:C -> B133R:U: adjacent_3p downward } 0 6 {B133R:U -> B175R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B175R:A -> B133R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B174R:G -> B175R:A: adjacent_5p upward } 0 11 {B175R:A -> B174R:G: adjacent_3p downward } 0 12 {B175R:A -> B176R:G: adjacent_5p upward } 0 13 {B176R:G -> B175R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B133R:U 0 1 B134R:C 0 2 B135R:U 0 3 B173R:A 0 4 B174R:G 0 5 B175R:A 0 [Edges] 0 {B133R:U -> B134R:C: adjacent_5p upward } 0 1 {B134R:C -> B133R:U: adjacent_3p downward } 0 2 {B133R:U -> B175R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B175R:A -> B133R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B134R:C -> B135R:U: adjacent_5p upward } 0 5 {B135R:U -> B134R:C: adjacent_3p downward } 0 6 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B173R:A -> B174R:G: adjacent_5p upward } 0 11 {B174R:G -> B173R:A: adjacent_3p downward } 0 12 {B174R:G -> B175R:A: adjacent_5p upward } 0 13 {B175R:A -> B174R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B134R:C 0 1 B135R:U 0 2 B136R:G 0 3 B172R:C 0 4 B173R:A 0 5 B174R:G 0 [Edges] 0 {B134R:C -> B135R:U: adjacent_5p upward } 0 1 {B135R:U -> B134R:C: adjacent_3p downward } 0 2 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B135R:U -> B136R:G: adjacent_5p } 0 5 {B136R:G -> B135R:U: adjacent_3p } 0 6 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B136R:G -> B173R:A: outward } 0 11 {B173R:A -> B136R:G: outward } 0 12 {B172R:C -> B173R:A: adjacent_5p upward } 0 13 {B173R:A -> B172R:C: adjacent_3p downward } 0 14 {B173R:A -> B174R:G: adjacent_5p upward } 0 15 {B174R:G -> B173R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B135R:U 0 1 B136R:G 0 2 B137R:U 0 3 B171R:G 0 4 B172R:C 0 5 B173R:A 0 [Edges] 0 {B135R:U -> B136R:G: adjacent_5p } 0 1 {B136R:G -> B135R:U: adjacent_3p } 0 2 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B136R:G -> B137R:U: adjacent_5p upward } 0 5 {B137R:U -> B136R:G: adjacent_3p downward } 0 6 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B136R:G -> B173R:A: outward } 0 9 {B173R:A -> B136R:G: outward } 0 10 {B137R:U -> B171R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B171R:G -> B137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B171R:G -> B172R:C: adjacent_5p upward } 0 13 {B172R:C -> B171R:G: adjacent_3p downward } 0 14 {B172R:C -> B173R:A: adjacent_5p upward } 0 15 {B173R:A -> B172R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B136R:G 0 1 B137R:U 0 2 B138R:U 0 3 B170R:G 0 4 B171R:G 0 5 B172R:C 0 [Edges] 0 {B136R:G -> B137R:U: adjacent_5p upward } 0 1 {B137R:U -> B136R:G: adjacent_3p downward } 0 2 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B137R:U -> B138R:U: adjacent_5p upward } 0 5 {B138R:U -> B137R:U: adjacent_3p downward } 0 6 {B137R:U -> B171R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B171R:G -> B137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B138R:U -> B170R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B170R:G -> B138R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B170R:G -> B171R:G: adjacent_5p upward } 0 11 {B171R:G -> B170R:G: adjacent_3p downward } 0 12 {B171R:G -> B172R:C: adjacent_5p upward } 0 13 {B172R:C -> B171R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B137R:U 0 1 B138R:U 0 2 B139R:U 0 3 B169R:A 0 4 B170R:G 0 5 B171R:G 0 [Edges] 0 {B137R:U -> B138R:U: adjacent_5p upward } 0 1 {B138R:U -> B137R:U: adjacent_3p downward } 0 2 {B137R:U -> B171R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B171R:G -> B137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B138R:U -> B139R:U: adjacent_5p upward } 0 5 {B139R:U -> B138R:U: adjacent_3p downward } 0 6 {B138R:U -> B170R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B170R:G -> B138R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B139R:U -> B169R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B169R:A -> B139R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B169R:A -> B170R:G: adjacent_5p upward } 0 11 {B170R:G -> B169R:A: adjacent_3p downward } 0 12 {B170R:G -> B171R:G: adjacent_5p upward } 0 13 {B171R:G -> B170R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B144R:G 0 1 B145R:G 0 2 B146R:U 0 3 B165R:G 0 4 B166R:C 0 5 B167R:C 0 [Edges] 0 {B144R:G -> B145R:G: adjacent_5p upward } 0 1 {B145R:G -> B144R:G: adjacent_3p downward } 0 2 {B144R:G -> B167R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B167R:C -> B144R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B145R:G -> B146R:U: adjacent_5p upward } 0 5 {B146R:U -> B145R:G: adjacent_3p downward } 0 6 {B145R:G -> B166R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B166R:C -> B145R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B146R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B165R:G -> B146R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B165R:G -> B166R:C: adjacent_5p upward } 0 11 {B166R:C -> B165R:G: adjacent_3p downward } 0 12 {B166R:C -> B167R:C: adjacent_5p upward } 0 13 {B167R:C -> B166R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B145R:G 0 1 B146R:U 0 2 B147R:C 0 3 B164R:A 0 4 B165R:G 0 5 B166R:C 0 [Edges] 0 {B145R:G -> B146R:U: adjacent_5p upward } 0 1 {B146R:U -> B145R:G: adjacent_3p downward } 0 2 {B145R:G -> B166R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B166R:C -> B145R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B146R:U -> B147R:C: adjacent_5p upward } 0 5 {B147R:C -> B146R:U: adjacent_3p downward } 0 6 {B146R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B165R:G -> B146R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 9 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 10 {B164R:A -> B165R:G: adjacent_5p upward } 0 11 {B165R:G -> B164R:A: adjacent_3p downward } 0 12 {B165R:G -> B166R:C: adjacent_5p upward } 0 13 {B166R:C -> B165R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B146R:U 0 1 B147R:C 0 2 B148R:A 0 3 B163R:C 0 4 B164R:A 0 5 B165R:G 0 [Edges] 0 {B146R:U -> B147R:C: adjacent_5p upward } 0 1 {B147R:C -> B146R:U: adjacent_3p downward } 0 2 {B146R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B165R:G -> B146R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B147R:C -> B148R:A: adjacent_5p } 0 5 {B148R:A -> B147R:C: adjacent_3p } 0 6 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 7 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 8 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 9 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 10 {B148R:A -> B164R:A: outward } 0 11 {B164R:A -> B148R:A: outward } 0 12 {B163R:C -> B164R:A: adjacent_5p upward } 0 13 {B164R:A -> B163R:C: adjacent_3p downward } 0 14 {B164R:A -> B165R:G: adjacent_5p upward } 0 15 {B165R:G -> B164R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B147R:C 0 1 B148R:A 0 2 B149R:G 0 3 B162R:G 0 4 B163R:C 0 5 B164R:A 0 [Edges] 0 {B147R:C -> B148R:A: adjacent_5p } 0 1 {B148R:A -> B147R:C: adjacent_3p } 0 2 {B147R:C -> B162R:G: inward } 0 3 {B162R:G -> B147R:C: inward } 0 4 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 5 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 6 {B148R:A -> B149R:G: adjacent_5p upward } 0 7 {B149R:G -> B148R:A: adjacent_3p downward } 0 8 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 9 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 10 {B148R:A -> B164R:A: outward } 0 11 {B164R:A -> B148R:A: outward } 0 12 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 13 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 14 {B162R:G -> B163R:C: adjacent_5p } 0 15 {B163R:C -> B162R:G: adjacent_3p } 0 16 {B163R:C -> B164R:A: adjacent_5p upward } 0 17 {B164R:A -> B163R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . 8 10 2 . 7 . 12 . . 3 3 . 13 . 14 . 4 . 9 . 15 . 16 5 5 11 . . 17 . [GraphModel] [Vertices] 0 B148R:A 0 1 B149R:G 0 2 B150R:G 0 3 B161R:A 0 4 B162R:G 0 5 B163R:C 0 [Edges] 0 {B148R:A -> B149R:G: adjacent_5p upward } 0 1 {B149R:G -> B148R:A: adjacent_3p downward } 0 2 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {B149R:G -> B150R:G: adjacent_5p upward } 0 5 {B150R:G -> B149R:G: adjacent_3p downward } 0 6 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 7 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 8 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {B161R:A -> B162R:G: adjacent_5p upward } 0 11 {B162R:G -> B161R:A: adjacent_3p downward } 0 12 {B162R:G -> B163R:C: adjacent_5p } 0 13 {B163R:C -> B162R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B149R:G 0 1 B150R:G 0 2 B151R:U 0 3 B160R:A 0 4 B161R:A 0 5 B162R:G 0 [Edges] 0 {B149R:G -> B150R:G: adjacent_5p upward } 0 1 {B150R:G -> B149R:G: adjacent_3p downward } 0 2 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {B150R:G -> B151R:U: adjacent_5p upward } 0 5 {B151R:U -> B150R:G: adjacent_3p downward } 0 6 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B160R:A -> B161R:A: adjacent_5p upward } 0 11 {B161R:A -> B160R:A: adjacent_3p downward } 0 12 {B161R:A -> B162R:G: adjacent_5p upward } 0 13 {B162R:G -> B161R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B150R:G 0 1 B151R:U 0 2 B152R:C 0 3 B159R:G 0 4 B160R:A 0 5 B161R:A 0 [Edges] 0 {B150R:G -> B151R:U: adjacent_5p upward } 0 1 {B151R:U -> B150R:G: adjacent_3p downward } 0 2 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B151R:U -> B152R:C: adjacent_5p upward } 0 5 {B152R:C -> B151R:U: adjacent_3p downward } 0 6 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B152R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B159R:G -> B152R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B159R:G -> B160R:A: adjacent_5p upward } 0 11 {B160R:A -> B159R:G: adjacent_3p downward } 0 12 {B160R:A -> B161R:A: adjacent_5p upward } 0 13 {B161R:A -> B160R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B151R:U 0 1 B152R:C 0 2 B153R:C 0 3 B158R:G 0 4 B159R:G 0 5 B160R:A 0 [Edges] 0 {B151R:U -> B152R:C: adjacent_5p upward } 0 1 {B152R:C -> B151R:U: adjacent_3p downward } 0 2 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B152R:C -> B153R:C: adjacent_5p } 0 5 {B153R:C -> B152R:C: adjacent_3p } 0 6 {B152R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B159R:G -> B152R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B153R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B158R:G -> B153R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B158R:G -> B159R:G: adjacent_5p upward } 0 11 {B159R:G -> B158R:G: adjacent_3p downward } 0 12 {B159R:G -> B160R:A: adjacent_5p upward } 0 13 {B160R:A -> B159R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B152R:C 0 1 B153R:C 0 2 B154R:G 0 3 B157R:A 0 4 B158R:G 0 5 B159R:G 0 [Edges] 0 {B152R:C -> B153R:C: adjacent_5p } 0 1 {B153R:C -> B152R:C: adjacent_3p } 0 2 {B152R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B159R:G -> B152R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B153R:C -> B154R:G: adjacent_5p upward } 0 5 {B154R:G -> B153R:C: adjacent_3p downward } 0 6 {B153R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B158R:G -> B153R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B154R:G -> B157R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 9 {B157R:A -> B154R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 10 {B154R:G -> B158R:G: outward } 0 11 {B158R:G -> B154R:G: outward } 0 12 {B157R:A -> B158R:G: adjacent_5p } 0 13 {B158R:G -> B157R:A: adjacent_3p } 0 14 {B158R:G -> B159R:G: adjacent_5p upward } 0 15 {B159R:G -> B158R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A102R:C 0 1 A103R:U 0 2 A104R:G 0 3 B127R:C 0 4 B128R:A 0 5 B129R:G 0 [Edges] 0 {A102R:C -> A103R:U: adjacent_5p upward } 0 1 {A103R:U -> A102R:C: adjacent_3p downward } 0 2 {A102R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B129R:G -> A102R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A103R:U -> A104R:G: adjacent_5p upward } 0 5 {A104R:G -> A103R:U: adjacent_3p downward } 0 6 {A103R:U -> B128R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B128R:A -> A103R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A104R:G -> B127R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B127R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A104R:G -> B128R:A: outward } 0 11 {B128R:A -> A104R:G: outward } 0 12 {B127R:C -> B128R:A: adjacent_5p } 0 13 {B128R:A -> B127R:C: adjacent_3p } 0 14 {B128R:A -> B129R:G: adjacent_5p upward } 0 15 {B129R:G -> B128R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A103R:U 0 1 A104R:G 0 2 A105R:G 0 3 B126R:A 0 4 B127R:C 0 5 B128R:A 0 [Edges] 0 {A103R:U -> A104R:G: adjacent_5p upward } 0 1 {A104R:G -> A103R:U: adjacent_3p downward } 0 2 {A103R:U -> B128R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B128R:A -> A103R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A104R:G -> A105R:G: adjacent_5p upward } 0 5 {A105R:G -> A104R:G: adjacent_3p downward } 0 6 {A104R:G -> B127R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B127R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A104R:G -> B128R:A: outward } 0 9 {B128R:A -> A104R:G: outward } 0 10 {A105R:G -> B126R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B126R:A -> A105R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {B126R:A -> B127R:C: adjacent_5p upward } 0 13 {B127R:C -> B126R:A: adjacent_3p downward } 0 14 {B127R:C -> B128R:A: adjacent_5p } 0 15 {B128R:A -> B127R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A106R:G 0 1 A107R:C 0 2 A108R:G 0 3 B122R:C 0 4 B123R:G 0 5 B124R:G 0 [Edges] 0 {A106R:G -> A107R:C: adjacent_5p upward } 0 1 {A107R:C -> A106R:G: adjacent_3p downward } 0 2 {A106R:G -> B124R:G: pairing parallel cis VI Ww/Hh } 0 3 {B124R:G -> A106R:G: pairing parallel cis VI Hh/Ww } 0 4 {A107R:C -> A108R:G: adjacent_5p upward } 0 5 {A108R:G -> A107R:C: adjacent_3p downward } 0 6 {A107R:C -> B123R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B123R:G -> A107R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A108R:G -> B122R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B122R:C -> A108R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A108R:G -> B123R:G: outward } 0 11 {B123R:G -> A108R:G: outward } 0 12 {B122R:C -> B123R:G: adjacent_5p } 0 13 {B123R:G -> B122R:C: adjacent_3p } 0 14 {B123R:G -> B124R:G: adjacent_5p inward } 0 15 {B124R:G -> B123R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A109R:C 0 1 A110R:A 0 2 A111R:G 0 3 B118R:C 0 4 B119R:U 0 5 B120R:G 0 [Edges] 0 {A109R:C -> A110R:A: adjacent_5p } 0 1 {A110R:A -> A109R:C: adjacent_3p } 0 2 {A109R:C -> B120R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B120R:G -> A109R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A110R:A -> A111R:G: adjacent_5p upward } 0 5 {A111R:G -> A110R:A: adjacent_3p downward } 0 6 {A110R:A -> B119R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B119R:U -> A110R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A110R:A -> B120R:G: outward } 0 9 {B120R:G -> A110R:A: outward } 0 10 {A111R:G -> B118R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B118R:C -> A111R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B118R:C -> B119R:U: adjacent_5p } 0 13 {B119R:U -> B118R:C: adjacent_3p } 0 14 {B119R:U -> B120R:G: adjacent_5p } 0 15 {B120R:G -> B119R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 C202R:C 0 1 C203R:U 0 2 C204R:G 0 3 D227R:C 0 4 D228R:A 0 5 D229R:G 0 [Edges] 0 {C202R:C -> C203R:U: adjacent_5p upward } 0 1 {C203R:U -> C202R:C: adjacent_3p downward } 0 2 {C202R:C -> D229R:G: pairing antiparallel cis 130 Ww/Ww } 0 3 {D229R:G -> C202R:C: pairing antiparallel cis 130 Ww/Ww } 0 4 {C203R:U -> C204R:G: adjacent_5p upward } 0 5 {C204R:G -> C203R:U: adjacent_3p downward } 0 6 {C203R:U -> D228R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D228R:A -> C203R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C204R:G -> D227R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D227R:C -> C204R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D227R:C -> D228R:A: adjacent_5p } 0 11 {D228R:A -> D227R:C: adjacent_3p } 0 12 {D228R:A -> D229R:G: adjacent_5p upward } 0 13 {D229R:G -> D228R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C203R:U 0 1 C204R:G 0 2 C205R:G 0 3 D226R:A 0 4 D227R:C 0 5 D228R:A 0 [Edges] 0 {C203R:U -> C204R:G: adjacent_5p upward } 0 1 {C204R:G -> C203R:U: adjacent_3p downward } 0 2 {C203R:U -> D228R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D228R:A -> C203R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C204R:G -> C205R:G: adjacent_5p upward } 0 5 {C205R:G -> C204R:G: adjacent_3p downward } 0 6 {C204R:G -> D227R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D227R:C -> C204R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C205R:G -> D226R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 9 {D226R:A -> C205R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 10 {D226R:A -> D227R:C: adjacent_5p } 0 11 {D227R:C -> D226R:A: adjacent_3p } 0 12 {D227R:C -> D228R:A: adjacent_5p } 0 13 {D228R:A -> D227R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C206R:G 0 1 C207R:C 0 2 C208R:G 0 3 D222R:C 0 4 D223R:G 0 5 D224R:G 0 [Edges] 0 {C206R:G -> C207R:C: adjacent_5p upward } 0 1 {C207R:C -> C206R:G: adjacent_3p downward } 0 2 {C206R:G -> D224R:G: pairing parallel cis VI Ww/Hh } 0 3 {D224R:G -> C206R:G: pairing parallel cis VI Hh/Ww } 0 4 {C207R:C -> C208R:G: adjacent_5p } 0 5 {C208R:G -> C207R:C: adjacent_3p } 0 6 {C207R:C -> D223R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D223R:G -> C207R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C208R:G -> D222R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D222R:C -> C208R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C208R:G -> D223R:G: outward } 0 11 {D223R:G -> C208R:G: outward } 0 12 {D222R:C -> D223R:G: adjacent_5p } 0 13 {D223R:G -> D222R:C: adjacent_3p } 0 14 {D223R:G -> D224R:G: adjacent_5p inward } 0 15 {D224R:G -> D223R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 C209R:C 0 1 C210R:A 0 2 C211R:G 0 3 D218R:C 0 4 D219R:U 0 5 D220R:G 0 [Edges] 0 {C209R:C -> C210R:A: adjacent_5p } 0 1 {C210R:A -> C209R:C: adjacent_3p } 0 2 {C209R:C -> D220R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D220R:G -> C209R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C210R:A -> C211R:G: adjacent_5p upward } 0 5 {C211R:G -> C210R:A: adjacent_3p downward } 0 6 {C210R:A -> D219R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D219R:U -> C210R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C210R:A -> D220R:G: outward } 0 9 {D220R:G -> C210R:A: outward } 0 10 {C211R:G -> D218R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D218R:C -> C211R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D218R:C -> D219R:U: adjacent_5p upward } 0 13 {D219R:U -> D218R:C: adjacent_3p downward } 0 14 {D219R:U -> D220R:G: adjacent_5p upward } 0 15 {D220R:G -> D219R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 E302R:C 0 1 E303R:U 0 2 E304R:G 0 3 F327R:C 0 4 F328R:A 0 5 F329R:G 0 [Edges] 0 {E302R:C -> E303R:U: adjacent_5p } 0 1 {E303R:U -> E302R:C: adjacent_3p } 0 2 {E302R:C -> F329R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F329R:G -> E302R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E303R:U -> E304R:G: adjacent_5p upward } 0 5 {E304R:G -> E303R:U: adjacent_3p downward } 0 6 {E303R:U -> F328R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F328R:A -> E303R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E304R:G -> F327R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {F327R:C -> E304R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {E304R:G -> F328R:A: outward } 0 11 {F328R:A -> E304R:G: outward } 0 12 {F327R:C -> F328R:A: adjacent_5p } 0 13 {F328R:A -> F327R:C: adjacent_3p } 0 14 {F328R:A -> F329R:G: adjacent_5p upward } 0 15 {F329R:G -> F328R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 E303R:U 0 1 E304R:G 0 2 E305R:G 0 3 F326R:A 0 4 F327R:C 0 5 F328R:A 0 [Edges] 0 {E303R:U -> E304R:G: adjacent_5p upward } 0 1 {E304R:G -> E303R:U: adjacent_3p downward } 0 2 {E303R:U -> F328R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F328R:A -> E303R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E304R:G -> E305R:G: adjacent_5p upward } 0 5 {E305R:G -> E304R:G: adjacent_3p downward } 0 6 {E304R:G -> F327R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F327R:C -> E304R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E304R:G -> F328R:A: outward } 0 9 {F328R:A -> E304R:G: outward } 0 10 {E305R:G -> F326R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {F326R:A -> E305R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {F326R:A -> F327R:C: adjacent_5p upward } 0 13 {F327R:C -> F326R:A: adjacent_3p downward } 0 14 {F327R:C -> F328R:A: adjacent_5p } 0 15 {F328R:A -> F327R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 E306R:G 0 1 E307R:C 0 2 E308R:G 0 3 F322R:C 0 4 F323R:G 0 5 F324R:G 0 [Edges] 0 {E306R:G -> E307R:C: adjacent_5p upward } 0 1 {E307R:C -> E306R:G: adjacent_3p downward } 0 2 {E306R:G -> F324R:G: pairing parallel cis VI Ww/Hh } 0 3 {F324R:G -> E306R:G: pairing parallel cis VI Hh/Ww } 0 4 {E307R:C -> E308R:G: adjacent_5p upward } 0 5 {E308R:G -> E307R:C: adjacent_3p downward } 0 6 {E307R:C -> F323R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F323R:G -> E307R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E308R:G -> F322R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {F322R:C -> E308R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {E308R:G -> F323R:G: outward } 0 11 {F323R:G -> E308R:G: outward } 0 12 {F322R:C -> F323R:G: adjacent_5p } 0 13 {F323R:G -> F322R:C: adjacent_3p } 0 14 {F323R:G -> F324R:G: adjacent_5p inward } 0 15 {F324R:G -> F323R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 E309R:C 0 1 E310R:A 0 2 E311R:G 0 3 F318R:C 0 4 F319R:U 0 5 F320R:G 0 [Edges] 0 {E309R:C -> E310R:A: adjacent_5p } 0 1 {E310R:A -> E309R:C: adjacent_3p } 0 2 {E309R:C -> F320R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F320R:G -> E309R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E310R:A -> E311R:G: adjacent_5p upward } 0 5 {E311R:G -> E310R:A: adjacent_3p downward } 0 6 {E310R:A -> F319R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F319R:U -> E310R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E310R:A -> F320R:G: outward } 0 9 {F320R:G -> E310R:A: outward } 0 10 {E311R:G -> F318R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F318R:C -> E311R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {F318R:C -> F319R:U: adjacent_5p } 0 13 {F319R:U -> F318R:C: adjacent_3p } 0 14 {F319R:U -> F320R:G: adjacent_5p } 0 15 {F320R:G -> F319R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 G402R:C 0 1 G403R:U 0 2 G404R:G 0 3 H427R:C 0 4 H428R:A 0 5 H429R:G 0 [Edges] 0 {G402R:C -> G403R:U: adjacent_5p upward } 0 1 {G403R:U -> G402R:C: adjacent_3p downward } 0 2 {G402R:C -> H429R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {H429R:G -> G402R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G403R:U -> G404R:G: adjacent_5p upward } 0 5 {G404R:G -> G403R:U: adjacent_3p downward } 0 6 {G403R:U -> H428R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H428R:A -> G403R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G404R:G -> H427R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {H427R:C -> G404R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {H427R:C -> H428R:A: adjacent_5p upward } 0 11 {H428R:A -> H427R:C: adjacent_3p downward } 0 12 {H428R:A -> H429R:G: adjacent_5p upward } 0 13 {H429R:G -> H428R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 G403R:U 0 1 G404R:G 0 2 G405R:G 0 3 H426R:A 0 4 H427R:C 0 5 H428R:A 0 [Edges] 0 {G403R:U -> G404R:G: adjacent_5p upward } 0 1 {G404R:G -> G403R:U: adjacent_3p downward } 0 2 {G403R:U -> H428R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H428R:A -> G403R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G404R:G -> G405R:G: adjacent_5p upward } 0 5 {G405R:G -> G404R:G: adjacent_3p downward } 0 6 {G404R:G -> H427R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H427R:C -> G404R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G405R:G -> H426R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 9 {H426R:A -> G405R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 10 {H426R:A -> H427R:C: adjacent_5p } 0 11 {H427R:C -> H426R:A: adjacent_3p } 0 12 {H427R:C -> H428R:A: adjacent_5p upward } 0 13 {H428R:A -> H427R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 G406R:G 0 1 G407R:C 0 2 G408R:G 0 3 H422R:C 0 4 H423R:G 0 5 H424R:G 0 [Edges] 0 {G406R:G -> G407R:C: adjacent_5p upward } 0 1 {G407R:C -> G406R:G: adjacent_3p downward } 0 2 {G406R:G -> H424R:G: pairing parallel cis VI Ww/Hh } 0 3 {H424R:G -> G406R:G: pairing parallel cis VI Hh/Ww } 0 4 {G407R:C -> G408R:G: adjacent_5p upward } 0 5 {G408R:G -> G407R:C: adjacent_3p downward } 0 6 {G407R:C -> H423R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {H423R:G -> G407R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G408R:G -> H422R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {H422R:C -> G408R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {G408R:G -> H423R:G: outward } 0 11 {H423R:G -> G408R:G: outward } 0 12 {H422R:C -> H423R:G: adjacent_5p } 0 13 {H423R:G -> H422R:C: adjacent_3p } 0 14 {H423R:G -> H424R:G: adjacent_5p inward } 0 15 {H424R:G -> H423R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 G409R:C 0 1 G410R:A 0 2 G411R:G 0 3 H418R:C 0 4 H419R:U 0 5 H420R:G 0 [Edges] 0 {G409R:C -> G410R:A: adjacent_5p } 0 1 {G410R:A -> G409R:C: adjacent_3p } 0 2 {G409R:C -> H420R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {H420R:G -> G409R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G410R:A -> G411R:G: adjacent_5p upward } 0 5 {G411R:G -> G410R:A: adjacent_3p downward } 0 6 {G410R:A -> H419R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H419R:U -> G410R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G410R:A -> H420R:G: outward } 0 9 {H420R:G -> G410R:A: outward } 0 10 {G411R:G -> H418R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {H418R:C -> G411R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {H418R:C -> H419R:U: adjacent_5p upward } 0 13 {H419R:U -> H418R:C: adjacent_3p downward } 0 14 {H419R:U -> H420R:G: adjacent_5p upward } 0 15 {H420R:G -> H419R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 C9R:A 0 1 C10R:G 0 2 C11R:A 0 3 D52R:U 0 4 D53R:C 0 5 D54R:U 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p upward } 0 1 {C10R:G -> C9R:A: adjacent_3p downward } 0 2 {C9R:A -> D54R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D54R:U -> C9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C10R:G -> C11R:A: adjacent_5p upward } 0 5 {C11R:A -> C10R:G: adjacent_3p downward } 0 6 {C10R:G -> D53R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D53R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C11R:A -> D52R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {D52R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {D52R:U -> D53R:C: adjacent_5p upward } 0 11 {D53R:C -> D52R:U: adjacent_3p downward } 0 12 {D53R:C -> D54R:U: adjacent_5p upward } 0 13 {D54R:U -> D53R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:A 0 2 C12R:C 0 3 D51R:G 0 4 D52R:U 0 5 D53R:C 0 [Edges] 0 {C10R:G -> C11R:A: adjacent_5p upward } 0 1 {C11R:A -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> D53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D53R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:A -> C12R:C: adjacent_5p upward } 0 5 {C12R:C -> C11R:A: adjacent_3p downward } 0 6 {C11R:A -> D52R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D52R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C12R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D51R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D51R:G -> D52R:U: adjacent_5p upward } 0 11 {D52R:U -> D51R:G: adjacent_3p downward } 0 12 {D52R:U -> D53R:C: adjacent_5p upward } 0 13 {D53R:C -> D52R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C20R:C 0 1 C21R:C 0 2 C22R:G 0 3 D47R:C 0 4 D48R:G 0 5 D49R:G 0 [Edges] 0 {C20R:C -> C21R:C: adjacent_5p upward } 0 1 {C21R:C -> C20R:C: adjacent_3p downward } 0 2 {C20R:C -> D49R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D49R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C21R:C -> C22R:G: adjacent_5p } 0 5 {C22R:G -> C21R:C: adjacent_3p } 0 6 {C21R:C -> D48R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D48R:G -> C21R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C22R:G -> D47R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D47R:C -> C22R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C22R:G -> D48R:G: outward } 0 11 {D48R:G -> C22R:G: outward } 0 12 {D47R:C -> D48R:G: adjacent_5p } 0 13 {D48R:G -> D47R:C: adjacent_3p } 0 14 {D48R:G -> D49R:G: adjacent_5p upward } 0 15 {D49R:G -> D48R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 C21R:C 0 1 C22R:G 0 2 C23R:G 0 3 D46R:C 0 4 D47R:C 0 5 D48R:G 0 [Edges] 0 {C21R:C -> C22R:G: adjacent_5p } 0 1 {C22R:G -> C21R:C: adjacent_3p } 0 2 {C21R:C -> D48R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D48R:G -> C21R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C22R:G -> C23R:G: adjacent_5p upward } 0 5 {C23R:G -> C22R:G: adjacent_3p downward } 0 6 {C22R:G -> D47R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D47R:C -> C22R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C22R:G -> D48R:G: outward } 0 9 {D48R:G -> C22R:G: outward } 0 10 {C23R:G -> D46R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D46R:C -> C23R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D46R:C -> D47R:C: adjacent_5p upward } 0 13 {D47R:C -> D46R:C: adjacent_3p downward } 0 14 {D47R:C -> D48R:G: adjacent_5p } 0 15 {D48R:G -> D47R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 C25R:G 0 1 C26R:U 0 2 C27R:C 0 3 D36R:G 0 4 D37R:A 0 5 D38R:C 0 [Edges] 0 {C25R:G -> C26R:U: adjacent_5p upward } 0 1 {C26R:U -> C25R:G: adjacent_3p downward } 0 2 {C25R:G -> D38R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D38R:C -> C25R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C26R:U -> C27R:C: adjacent_5p upward } 0 5 {C27R:C -> C26R:U: adjacent_3p downward } 0 6 {C26R:U -> D37R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D37R:A -> C26R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C27R:C -> D36R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D36R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D36R:G -> D37R:A: adjacent_5p upward } 0 11 {D37R:A -> D36R:G: adjacent_3p downward } 0 12 {D37R:A -> D38R:C: adjacent_5p upward } 0 13 {D38R:C -> D37R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C26R:U 0 1 C27R:C 0 2 C28R:U 0 3 D35R:A 0 4 D36R:G 0 5 D37R:A 0 [Edges] 0 {C26R:U -> C27R:C: adjacent_5p upward } 0 1 {C27R:C -> C26R:U: adjacent_3p downward } 0 2 {C26R:U -> D37R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D37R:A -> C26R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C27R:C -> C28R:U: adjacent_5p upward } 0 5 {C28R:U -> C27R:C: adjacent_3p downward } 0 6 {C27R:C -> D36R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D36R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C28R:U -> D35R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D35R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D35R:A -> D36R:G: adjacent_5p upward } 0 11 {D36R:G -> D35R:A: adjacent_3p downward } 0 12 {D36R:G -> D37R:A: adjacent_5p upward } 0 13 {D37R:A -> D36R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:G 0 2 A4R:C 0 3 A21R:G 0 4 A22R:C 0 5 A23R:G 0 [Edges] 0 {A2R:U -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:U: adjacent_3p } 0 2 {A2R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A23R:G -> A2R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A21R:G -> A22R:C: adjacent_5p } 0 11 {A22R:C -> A21R:G: adjacent_3p } 0 12 {A22R:C -> A23R:G: adjacent_5p } 0 13 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:G 0 3 A20R:A 0 4 A21R:G 0 5 A22R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A20R:A -> A21R:G: adjacent_5p upward } 0 11 {A21R:G -> A20R:A: adjacent_3p downward } 0 12 {A21R:G -> A22R:C: adjacent_5p } 0 13 {A22R:C -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:G 0 2 A6R:A 0 3 A19R:G 0 4 A20R:A 0 5 A21R:G 0 [Edges] 0 {A4R:C -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 9 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 10 {A6R:A -> A20R:A: outward } 0 11 {A20R:A -> A6R:A: outward } 0 12 {A19R:G -> A20R:A: adjacent_5p } 0 13 {A20R:A -> A19R:G: adjacent_3p } 0 14 {A20R:A -> A21R:G: adjacent_5p upward } 0 15 {A21R:G -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:A 0 3 A18R:C 0 4 A19R:G 0 5 A20R:A 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A6R:A -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 7 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 8 {A6R:A -> A20R:A: outward } 0 9 {A20R:A -> A6R:A: outward } 0 10 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {A18R:C -> A19R:G: adjacent_5p upward } 0 13 {A19R:G -> A18R:C: adjacent_3p downward } 0 14 {A19R:G -> A20R:A: adjacent_5p } 0 15 {A20R:A -> A19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A8R:G 0 3 A17R:C 0 4 A18R:C 0 5 A19R:G 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {A7R:A -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A17R:C -> A18R:C: adjacent_5p upward } 0 11 {A18R:C -> A17R:C: adjacent_3p downward } 0 12 {A18R:C -> A19R:G: adjacent_5p upward } 0 13 {A19R:G -> A18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:G 0 2 A9R:A 0 3 A16R:U 0 4 A17R:C 0 5 A18R:C 0 [Edges] 0 {A7R:A -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A8R:G -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A16R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A16R:U -> A17R:C: adjacent_5p upward } 0 11 {A17R:C -> A16R:U: adjacent_3p downward } 0 12 {A17R:C -> A18R:C: adjacent_5p upward } 0 13 {A18R:C -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:A 0 2 A10R:C 0 3 A15R:G 0 4 A16R:U 0 5 A17R:C 0 [Edges] 0 {A8R:G -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A15R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A15R:G -> A16R:U: adjacent_5p upward } 0 11 {A16R:U -> A15R:G: adjacent_3p downward } 0 12 {A16R:U -> A17R:C: adjacent_5p upward } 0 13 {A17R:C -> A16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 C32R:G 0 1 C33R:A 0 2 C34R:G 0 3 C42R:C 0 4 C43R:G 0 5 C44R:A 0 [Edges] 0 {C32R:G -> C33R:A: adjacent_5p } 0 1 {C33R:A -> C32R:G: adjacent_3p } 0 2 {C32R:G -> C44R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {C44R:A -> C32R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {C33R:A -> C34R:G: adjacent_5p upward } 0 5 {C34R:G -> C33R:A: adjacent_3p downward } 0 6 {C33R:A -> C43R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {C43R:G -> C33R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {C33R:A -> C44R:A: outward } 0 9 {C44R:A -> C33R:A: outward } 0 10 {C34R:G -> C42R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C42R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C42R:C -> C43R:G: adjacent_5p upward } 0 13 {C43R:G -> C42R:C: adjacent_3p downward } 0 14 {C43R:G -> C44R:A: adjacent_5p } 0 15 {C44R:A -> C43R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 C33R:A 0 1 C34R:G 0 2 C35R:G 0 3 C41R:C 0 4 C42R:C 0 5 C43R:G 0 [Edges] 0 {C33R:A -> C34R:G: adjacent_5p upward } 0 1 {C34R:G -> C33R:A: adjacent_3p downward } 0 2 {C33R:A -> C43R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {C43R:G -> C33R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {C34R:G -> C35R:G: adjacent_5p upward } 0 5 {C35R:G -> C34R:G: adjacent_3p downward } 0 6 {C34R:G -> C42R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C42R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C35R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C41R:C -> C35R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C41R:C -> C42R:C: adjacent_5p upward } 0 11 {C42R:C -> C41R:C: adjacent_3p downward } 0 12 {C42R:C -> C43R:G: adjacent_5p upward } 0 13 {C43R:G -> C42R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D32R:G 0 1 D33R:A 0 2 D34R:G 0 3 D42R:C 0 4 D43R:G 0 5 D44R:A 0 [Edges] 0 {D32R:G -> D33R:A: adjacent_5p } 0 1 {D33R:A -> D32R:G: adjacent_3p } 0 2 {D32R:G -> D43R:G: inward } 0 3 {D43R:G -> D32R:G: inward } 0 4 {D32R:G -> D44R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {D44R:A -> D32R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {D33R:A -> D34R:G: adjacent_5p upward } 0 7 {D34R:G -> D33R:A: adjacent_3p downward } 0 8 {D33R:A -> D43R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {D43R:G -> D33R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {D33R:A -> D44R:A: outward } 0 11 {D44R:A -> D33R:A: outward } 0 12 {D34R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D42R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D42R:C -> D43R:G: adjacent_5p upward } 0 15 {D43R:G -> D42R:C: adjacent_3p downward } 0 16 {D43R:G -> D44R:A: adjacent_5p } 0 17 {D44R:A -> D43R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . 2 4 1 1 . 6 . 8 10 2 . 7 . 12 . . 3 . . 13 . 14 . 4 3 9 . 15 . 16 5 5 11 . . 17 . [GraphModel] [Vertices] 0 D33R:A 0 1 D34R:G 0 2 D35R:G 0 3 D41R:C 0 4 D42R:C 0 5 D43R:G 0 [Edges] 0 {D33R:A -> D34R:G: adjacent_5p upward } 0 1 {D34R:G -> D33R:A: adjacent_3p downward } 0 2 {D33R:A -> D43R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {D43R:G -> D33R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {D34R:G -> D35R:G: adjacent_5p upward } 0 5 {D35R:G -> D34R:G: adjacent_3p downward } 0 6 {D34R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D42R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D35R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D41R:C -> D35R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D41R:C -> D42R:C: adjacent_5p upward } 0 11 {D42R:C -> D41R:C: adjacent_3p downward } 0 12 {D42R:C -> D43R:G: adjacent_5p upward } 0 13 {D43R:G -> D42R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:G 0 3 A16R:C 0 4 A17R:C 0 5 A18R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:C: adjacent_3p } 0 2 {A2R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A18R:G: outward } 0 9 {A18R:G -> A3R:G: outward } 0 10 {A4R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:C -> A17R:C: adjacent_5p } 0 13 {A17R:C -> A16R:C: adjacent_3p } 0 14 {A17R:C -> A18R:G: adjacent_5p } 0 15 {A18R:G -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:C 0 3 A15R:G 0 4 A16R:C 0 5 A17R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A15R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A15R:G -> A16R:C: adjacent_5p } 0 11 {A16R:C -> A15R:G: adjacent_3p } 0 12 {A16R:C -> A17R:C: adjacent_5p } 0 13 {A17R:C -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:C 0 3 A14R:G 0 4 A15R:G 0 5 A16R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A14R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A14R:G -> A15R:G: adjacent_5p upward } 0 11 {A15R:G -> A14R:G: adjacent_3p downward } 0 12 {A15R:G -> A16R:C: adjacent_5p } 0 13 {A16R:C -> A15R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:C 0 2 A10R:U 0 3 A32R:A 0 4 A33R:G 0 5 A34R:C 0 [Edges] 0 {A8R:G -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:C -> A10R:U: adjacent_5p } 0 5 {A10R:U -> A9R:C: adjacent_3p } 0 6 {A9R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A32R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A32R:A -> A33R:G: adjacent_5p upward } 0 11 {A33R:G -> A32R:A: adjacent_3p downward } 0 12 {A33R:G -> A34R:C: adjacent_5p upward } 0 13 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:U 0 2 A11R:C 0 3 A31R:G 0 4 A32R:A 0 5 A33R:G 0 [Edges] 0 {A9R:C -> A10R:U: adjacent_5p } 0 1 {A10R:U -> A9R:C: adjacent_3p } 0 2 {A9R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:U -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A31R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A31R:G -> A32R:A: adjacent_5p upward } 0 11 {A32R:A -> A31R:G: adjacent_3p downward } 0 12 {A32R:A -> A33R:G: adjacent_5p upward } 0 13 {A33R:G -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:C 0 2 A12R:C 0 3 A30R:G 0 4 A31R:G 0 5 A32R:A 0 [Edges] 0 {A10R:U -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:C -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A30R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A30R:G -> A31R:G: adjacent_5p upward } 0 11 {A31R:G -> A30R:G: adjacent_3p downward } 0 12 {A31R:G -> A32R:A: adjacent_5p upward } 0 13 {A32R:A -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:C 0 2 A13R:A 0 3 A29R:U 0 4 A30R:G 0 5 A31R:G 0 [Edges] 0 {A11R:C -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:A: adjacent_5p } 0 5 {A13R:A -> A12R:C: adjacent_3p } 0 6 {A12R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:A -> A29R:U: pairing antiparallel cis one_hbond 48 Wh/Bh } 0 9 {A29R:U -> A13R:A: pairing antiparallel cis one_hbond 48 Bh/Wh } 0 10 {A29R:U -> A30R:G: adjacent_5p upward } 0 11 {A30R:G -> A29R:U: adjacent_3p downward } 0 12 {A30R:G -> A31R:G: adjacent_5p upward } 0 13 {A31R:G -> A30R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:U 0 2 4R:G 0 3 27R:C 0 4 28R:A 0 5 29R:C 0 [Edges] 0 {2R:G -> 3R:U: adjacent_5p upward } 0 1 {3R:U -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {29R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:U -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:U: adjacent_3p downward } 0 6 {3R:U -> 28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {28R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {27R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {4R:G -> 28R:A: outward } 0 11 {28R:A -> 4R:G: outward } 0 12 {27R:C -> 28R:A: adjacent_5p upward } 0 13 {28R:A -> 27R:C: adjacent_3p downward } 0 14 {28R:A -> 29R:C: adjacent_5p upward } 0 15 {29R:C -> 28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 3R:U 0 1 4R:G 0 2 5R:G 0 3 26R:A 0 4 27R:C 0 5 28R:A 0 [Edges] 0 {3R:U -> 4R:G: adjacent_5p upward } 0 1 {4R:G -> 3R:U: adjacent_3p downward } 0 2 {3R:U -> 28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {28R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {4R:G -> 5R:G: adjacent_5p upward } 0 5 {5R:G -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {27R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 28R:A: outward } 0 9 {28R:A -> 4R:G: outward } 0 10 {5R:G -> 26R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {26R:A -> 5R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {26R:A -> 27R:C: adjacent_5p upward } 0 13 {27R:C -> 26R:A: adjacent_3p downward } 0 14 {27R:C -> 28R:A: adjacent_5p upward } 0 15 {28R:A -> 27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 6R:G 0 1 7R:C 0 2 8R:G 0 3 22R:C 0 4 23R:G 0 5 24R:G 0 [Edges] 0 {6R:G -> 7R:C: adjacent_5p } 0 1 {7R:C -> 6R:G: adjacent_3p } 0 2 {6R:G -> 24R:G: pairing parallel trans III Ww/Ww } 0 3 {24R:G -> 6R:G: pairing parallel trans III Ww/Ww } 0 4 {7R:C -> 8R:G: adjacent_5p } 0 5 {8R:G -> 7R:C: adjacent_3p } 0 6 {7R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {23R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {8R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {22R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {22R:C -> 23R:G: adjacent_5p upward } 0 11 {23R:G -> 22R:C: adjacent_3p downward } 0 12 {23R:G -> 24R:G: adjacent_5p } 0 13 {24R:G -> 23R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 9R:C 0 1 10R:A 0 2 11R:G 0 3 18R:C 0 4 19R:U 0 5 20R:G 0 [Edges] 0 {9R:C -> 10R:A: adjacent_5p } 0 1 {10R:A -> 9R:C: adjacent_3p } 0 2 {9R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {10R:A -> 11R:G: adjacent_5p upward } 0 5 {11R:G -> 10R:A: adjacent_3p downward } 0 6 {10R:A -> 19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {19R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {11R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {18R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {18R:C -> 19R:U: adjacent_5p upward } 0 11 {19R:U -> 18R:C: adjacent_3p downward } 0 12 {19R:U -> 20R:G: adjacent_5p upward } 0 13 {20R:G -> 19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 10R:A 0 1 11R:G 0 2 12R:C 0 3 17R:G 0 4 18R:C 0 5 19R:U 0 [Edges] 0 {10R:A -> 11R:G: adjacent_5p upward } 0 1 {11R:G -> 10R:A: adjacent_3p downward } 0 2 {10R:A -> 19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {19R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {11R:G -> 12R:C: adjacent_5p upward } 0 5 {12R:C -> 11R:G: adjacent_3p downward } 0 6 {11R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {18R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {12R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {17R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {17R:G -> 18R:C: adjacent_5p upward } 0 11 {18R:C -> 17R:G: adjacent_3p downward } 0 12 {18R:C -> 19R:U: adjacent_5p upward } 0 13 {19R:U -> 18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 11R:G 0 1 12R:C 0 2 13R:U 0 3 16R:G 0 4 17R:G 0 5 18R:C 0 [Edges] 0 {11R:G -> 12R:C: adjacent_5p upward } 0 1 {12R:C -> 11R:G: adjacent_3p downward } 0 2 {11R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {12R:C -> 13R:U: adjacent_5p upward } 0 5 {13R:U -> 12R:C: adjacent_3p downward } 0 6 {12R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {13R:U -> 16R:G: pairing parallel trans one_hbond Bs/Ww } 0 9 {16R:G -> 13R:U: pairing parallel trans one_hbond Ww/Bs } 0 10 {16R:G -> 17R:G: adjacent_5p outward } 0 11 {17R:G -> 16R:G: adjacent_3p outward } 0 12 {17R:G -> 18R:C: adjacent_5p upward } 0 13 {18R:C -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 C2R:A 0 1 C3R:G 0 2 C4R:G 0 3 C17R:C 0 4 C18R:C 0 5 C19R:U 0 [Edges] 0 {C2R:A -> C3R:G: adjacent_5p upward } 0 1 {C3R:G -> C2R:A: adjacent_3p downward } 0 2 {C2R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C19R:U -> C2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C3R:G -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:G: adjacent_3p downward } 0 6 {C3R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C18R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C17R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C4R:G -> C18R:C: outward } 0 11 {C18R:C -> C4R:G: outward } 0 12 {C17R:C -> C18R:C: adjacent_5p upward } 0 13 {C18R:C -> C17R:C: adjacent_3p downward } 0 14 {C18R:C -> C19R:U: adjacent_5p upward } 0 15 {C19R:U -> C18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:G 0 2 C5R:A 0 3 C16R:C 0 4 C17R:C 0 5 C18R:C 0 [Edges] 0 {C3R:G -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C18R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:G -> C5R:A: adjacent_5p upward } 0 5 {C5R:A -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C17R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C18R:C: outward } 0 9 {C18R:C -> C4R:G: outward } 0 10 {C5R:A -> C16R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 11 {C16R:C -> C5R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 12 {C16R:C -> C17R:C: adjacent_5p upward } 0 13 {C17R:C -> C16R:C: adjacent_3p downward } 0 14 {C17R:C -> C18R:C: adjacent_5p upward } 0 15 {C18R:C -> C17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 D2R:A 0 1 D3R:G 0 2 D4R:G 0 3 D17R:C 0 4 D18R:C 0 5 D19R:U 0 [Edges] 0 {D2R:A -> D3R:G: adjacent_5p upward } 0 1 {D3R:G -> D2R:A: adjacent_3p downward } 0 2 {D2R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D19R:U -> D2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D3R:G -> D4R:G: adjacent_5p upward } 0 5 {D4R:G -> D3R:G: adjacent_3p downward } 0 6 {D3R:G -> D18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D18R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:G -> D17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D17R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D17R:C -> D18R:C: adjacent_5p upward } 0 11 {D18R:C -> D17R:C: adjacent_3p downward } 0 12 {D18R:C -> D19R:U: adjacent_5p } 0 13 {D19R:U -> D18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:A 0 2 C4R:G 0 3 C69R:U 0 4 C70R:U 0 5 C71R:C 0 [Edges] 0 {C2R:G -> C3R:A: adjacent_5p upward } 0 1 {C3R:A -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C71R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 3 {C71R:C -> C2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 4 {C3R:A -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:A: adjacent_3p downward } 0 6 {C3R:A -> C70R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C70R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:G -> C69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {C69R:U -> C4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {C69R:U -> C70R:U: adjacent_5p } 0 11 {C70R:U -> C69R:U: adjacent_3p } 0 12 {C70R:U -> C71R:C: adjacent_5p } 0 13 {C71R:C -> C70R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C3R:A 0 1 C4R:G 0 2 C5R:C 0 3 C68R:G 0 4 C69R:U 0 5 C70R:U 0 [Edges] 0 {C3R:A -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:A: adjacent_3p downward } 0 2 {C3R:A -> C70R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C70R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> C69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {C69R:U -> C4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {C5R:C -> C68R:G: pairing antiparallel cis 130 Ww/Ww } 0 9 {C68R:G -> C5R:C: pairing antiparallel cis 130 Ww/Ww } 0 10 {C68R:G -> C69R:U: adjacent_5p upward } 0 11 {C69R:U -> C68R:G: adjacent_3p downward } 0 12 {C69R:U -> C70R:U: adjacent_5p } 0 13 {C70R:U -> C69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:C 0 2 C6R:G 0 3 C67R:C 0 4 C68R:G 0 5 C69R:U 0 [Edges] 0 {C4R:G -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> C69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C69R:U -> C4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C5R:C -> C6R:G: adjacent_5p upward } 0 5 {C6R:G -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> C68R:G: pairing antiparallel cis 130 Ww/Ww } 0 7 {C68R:G -> C5R:C: pairing antiparallel cis 130 Ww/Ww } 0 8 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C6R:G -> C68R:G: outward } 0 11 {C68R:G -> C6R:G: outward } 0 12 {C67R:C -> C68R:G: adjacent_5p } 0 13 {C68R:G -> C67R:C: adjacent_3p } 0 14 {C68R:G -> C69R:U: adjacent_5p upward } 0 15 {C69R:U -> C68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 C5R:C 0 1 C6R:G 0 2 C7R:G 0 3 C66R:C 0 4 C67R:C 0 5 C68R:G 0 [Edges] 0 {C5R:C -> C6R:G: adjacent_5p upward } 0 1 {C6R:G -> C5R:C: adjacent_3p downward } 0 2 {C5R:C -> C68R:G: pairing antiparallel cis 130 Ww/Ww } 0 3 {C68R:G -> C5R:C: pairing antiparallel cis 130 Ww/Ww } 0 4 {C6R:G -> C7R:G: adjacent_5p upward } 0 5 {C7R:G -> C6R:G: adjacent_3p downward } 0 6 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:G -> C68R:G: outward } 0 9 {C68R:G -> C6R:G: outward } 0 10 {C7R:G -> C66R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C66R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C66R:C -> C67R:C: adjacent_5p upward } 0 13 {C67R:C -> C66R:C: adjacent_3p downward } 0 14 {C67R:C -> C68R:G: adjacent_5p } 0 15 {C68R:G -> C67R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:U 0 2 C12R:U 0 3 C23R:A 0 4 C24R:A 0 5 C25R:U 0 [Edges] 0 {C10R:G -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> C25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C25R:U -> C10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C11R:U -> C12R:U: adjacent_5p } 0 5 {C12R:U -> C11R:U: adjacent_3p } 0 6 {C11R:U -> C24R:A: pairing antiparallel cis Ws/Ww } 0 7 {C24R:A -> C11R:U: pairing antiparallel cis Ww/Ws } 0 8 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C23R:A -> C24R:A: adjacent_5p upward } 0 11 {C24R:A -> C23R:A: adjacent_3p downward } 0 12 {C24R:A -> C25R:U: adjacent_5p upward } 0 13 {C25R:U -> C24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:U 0 2 C13R:C 0 3 C22R:G 0 4 C23R:A 0 5 C24R:A 0 [Edges] 0 {C11R:U -> C12R:U: adjacent_5p } 0 1 {C12R:U -> C11R:U: adjacent_3p } 0 2 {C11R:U -> C24R:A: pairing antiparallel cis Ws/Ww } 0 3 {C24R:A -> C11R:U: pairing antiparallel cis Ww/Ws } 0 4 {C12R:U -> C13R:C: adjacent_5p upward } 0 5 {C13R:C -> C12R:U: adjacent_3p downward } 0 6 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C13R:C -> C22R:G: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 9 {C22R:G -> C13R:C: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 10 {C22R:G -> C23R:A: adjacent_5p upward } 0 11 {C23R:A -> C22R:G: adjacent_3p downward } 0 12 {C23R:A -> C24R:A: adjacent_5p upward } 0 13 {C24R:A -> C23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C12R:U 0 1 C13R:C 0 2 C14R:A 0 3 C21R:A 0 4 C22R:G 0 5 C23R:A 0 [Edges] 0 {C12R:U -> C13R:C: adjacent_5p upward } 0 1 {C13R:C -> C12R:U: adjacent_3p downward } 0 2 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C13R:C -> C14R:A: adjacent_5p } 0 5 {C14R:A -> C13R:C: adjacent_3p } 0 6 {C13R:C -> C22R:G: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 7 {C22R:G -> C13R:C: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 8 {C14R:A -> C21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 9 {C21R:A -> C14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 10 {C14R:A -> C22R:G: outward } 0 11 {C22R:G -> C14R:A: outward } 0 12 {C21R:A -> C22R:G: adjacent_5p } 0 13 {C22R:G -> C21R:A: adjacent_3p } 0 14 {C22R:G -> C23R:A: adjacent_5p upward } 0 15 {C23R:A -> C22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 C26R:A 0 1 C27R:C 0 2 C28R:C 0 3 C42R:G 0 4 C43R:G 0 5 C44R:G 0 [Edges] 0 {C26R:A -> C27R:C: adjacent_5p upward } 0 1 {C27R:C -> C26R:A: adjacent_3p downward } 0 2 {C26R:A -> C44R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {C44R:G -> C26R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {C27R:C -> C28R:C: adjacent_5p upward } 0 5 {C28R:C -> C27R:C: adjacent_3p downward } 0 6 {C27R:C -> C43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C43R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {C42R:G -> C43R:G: adjacent_5p upward } 0 11 {C43R:G -> C42R:G: adjacent_3p downward } 0 12 {C43R:G -> C44R:G: adjacent_5p upward } 0 13 {C44R:G -> C43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C27R:C 0 1 C28R:C 0 2 C29R:U 0 3 C41R:A 0 4 C42R:G 0 5 C43R:G 0 [Edges] 0 {C27R:C -> C28R:C: adjacent_5p upward } 0 1 {C28R:C -> C27R:C: adjacent_3p downward } 0 2 {C27R:C -> C43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C43R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C28R:C -> C29R:U: adjacent_5p } 0 5 {C29R:U -> C28R:C: adjacent_3p } 0 6 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C41R:A -> C42R:G: adjacent_5p upward } 0 11 {C42R:G -> C41R:A: adjacent_3p downward } 0 12 {C42R:G -> C43R:G: adjacent_5p upward } 0 13 {C43R:G -> C42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C28R:C 0 1 C29R:U 0 2 C30R:G 0 3 C40R:C 0 4 C41R:A 0 5 C42R:G 0 [Edges] 0 {C28R:C -> C29R:U: adjacent_5p } 0 1 {C29R:U -> C28R:C: adjacent_3p } 0 2 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:U -> C30R:G: adjacent_5p } 0 5 {C30R:G -> C29R:U: adjacent_3p } 0 6 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C30R:G -> C41R:A: outward } 0 11 {C41R:A -> C30R:G: outward } 0 12 {C40R:C -> C41R:A: adjacent_5p } 0 13 {C41R:A -> C40R:C: adjacent_3p } 0 14 {C41R:A -> C42R:G: adjacent_5p upward } 0 15 {C42R:G -> C41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 C29R:U 0 1 C30R:G 0 2 C31R:C 0 3 C39R:G 0 4 C40R:C 0 5 C41R:A 0 [Edges] 0 {C29R:U -> C30R:G: adjacent_5p } 0 1 {C30R:G -> C29R:U: adjacent_3p } 0 2 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C30R:G -> C31R:C: adjacent_5p upward } 0 5 {C31R:C -> C30R:G: adjacent_3p downward } 0 6 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C30R:G -> C41R:A: outward } 0 9 {C41R:A -> C30R:G: outward } 0 10 {C31R:C -> C39R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C39R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C39R:G -> C40R:C: adjacent_5p upward } 0 13 {C40R:C -> C39R:G: adjacent_3p downward } 0 14 {C40R:C -> C41R:A: adjacent_5p } 0 15 {C41R:A -> C40R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 C30R:G 0 1 C31R:C 0 2 C32R:C 0 3 C38R:C 0 4 C39R:G 0 5 C40R:C 0 [Edges] 0 {C30R:G -> C31R:C: adjacent_5p upward } 0 1 {C31R:C -> C30R:G: adjacent_3p downward } 0 2 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C31R:C -> C32R:C: adjacent_5p upward } 0 5 {C32R:C -> C31R:C: adjacent_3p downward } 0 6 {C31R:C -> C39R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C39R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C32R:C -> C38R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 9 {C38R:C -> C32R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 10 {C38R:C -> C39R:G: adjacent_5p upward } 0 11 {C39R:G -> C38R:C: adjacent_3p downward } 0 12 {C39R:G -> C40R:C: adjacent_5p upward } 0 13 {C40R:C -> C39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C50R:C 0 1 C51R:G 0 2 C52R:G 0 3 C62R:C 0 4 C63R:C 0 5 C64R:G 0 [Edges] 0 {C50R:C -> C51R:G: adjacent_5p } 0 1 {C51R:G -> C50R:C: adjacent_3p } 0 2 {C50R:C -> C64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C64R:G -> C50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C51R:G -> C52R:G: adjacent_5p upward } 0 5 {C52R:G -> C51R:G: adjacent_3p downward } 0 6 {C51R:G -> C63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C63R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C51R:G -> C64R:G: outward } 0 9 {C64R:G -> C51R:G: outward } 0 10 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C62R:C -> C63R:C: adjacent_5p upward } 0 13 {C63R:C -> C62R:C: adjacent_3p downward } 0 14 {C63R:C -> C64R:G: adjacent_5p } 0 15 {C64R:G -> C63R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 C51R:G 0 1 C52R:G 0 2 C53R:G 0 3 C61R:C 0 4 C62R:C 0 5 C63R:C 0 [Edges] 0 {C51R:G -> C52R:G: adjacent_5p upward } 0 1 {C52R:G -> C51R:G: adjacent_3p downward } 0 2 {C51R:G -> C63R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C63R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C52R:G -> C53R:G: adjacent_5p upward } 0 5 {C53R:G -> C52R:G: adjacent_3p downward } 0 6 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C53R:G -> C61R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C61R:C -> C53R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C53R:G -> C62R:C: outward } 0 11 {C62R:C -> C53R:G: outward } 0 12 {C61R:C -> C62R:C: adjacent_5p } 0 13 {C62R:C -> C61R:C: adjacent_3p } 0 14 {C62R:C -> C63R:C: adjacent_5p upward } 0 15 {C63R:C -> C62R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 D1R:G 0 1 D2R:G 0 2 D3R:A 0 3 D70R:U 0 4 D71R:C 0 5 D72R:C 0 [Edges] 0 {D1R:G -> D2R:G: adjacent_5p upward } 0 1 {D2R:G -> D1R:G: adjacent_3p downward } 0 2 {D1R:G -> D72R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {D72R:C -> D1R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {D2R:G -> D3R:A: adjacent_5p upward } 0 5 {D3R:A -> D2R:G: adjacent_3p downward } 0 6 {D2R:G -> D71R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 7 {D71R:C -> D2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 8 {D3R:A -> D70R:U: pairing antiparallel cis Ww/Ws } 0 9 {D70R:U -> D3R:A: pairing antiparallel cis Ws/Ww } 0 10 {D70R:U -> D71R:C: adjacent_5p } 0 11 {D71R:C -> D70R:U: adjacent_3p } 0 12 {D71R:C -> D72R:C: adjacent_5p upward } 0 13 {D72R:C -> D71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:A 0 2 D4R:G 0 3 D69R:U 0 4 D70R:U 0 5 D71R:C 0 [Edges] 0 {D2R:G -> D3R:A: adjacent_5p upward } 0 1 {D3R:A -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D71R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 3 {D71R:C -> D2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 4 {D3R:A -> D4R:G: adjacent_5p upward } 0 5 {D4R:G -> D3R:A: adjacent_3p downward } 0 6 {D3R:A -> D70R:U: pairing antiparallel cis Ww/Ws } 0 7 {D70R:U -> D3R:A: pairing antiparallel cis Ws/Ww } 0 8 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {D69R:U -> D70R:U: adjacent_5p upward } 0 11 {D70R:U -> D69R:U: adjacent_3p downward } 0 12 {D70R:U -> D71R:C: adjacent_5p } 0 13 {D71R:C -> D70R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D3R:A 0 1 D4R:G 0 2 D5R:C 0 3 D68R:G 0 4 D69R:U 0 5 D70R:U 0 [Edges] 0 {D3R:A -> D4R:G: adjacent_5p upward } 0 1 {D4R:G -> D3R:A: adjacent_3p downward } 0 2 {D3R:A -> D70R:U: pairing antiparallel cis Ww/Ws } 0 3 {D70R:U -> D3R:A: pairing antiparallel cis Ws/Ww } 0 4 {D4R:G -> D5R:C: adjacent_5p upward } 0 5 {D5R:C -> D4R:G: adjacent_3p downward } 0 6 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D5R:C -> D68R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D68R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D68R:G -> D69R:U: adjacent_5p upward } 0 11 {D69R:U -> D68R:G: adjacent_3p downward } 0 12 {D69R:U -> D70R:U: adjacent_5p upward } 0 13 {D70R:U -> D69R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D4R:G 0 1 D5R:C 0 2 D6R:G 0 3 D67R:C 0 4 D68R:G 0 5 D69R:U 0 [Edges] 0 {D4R:G -> D5R:C: adjacent_5p upward } 0 1 {D5R:C -> D4R:G: adjacent_3p downward } 0 2 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D5R:C -> D6R:G: adjacent_5p } 0 5 {D6R:G -> D5R:C: adjacent_3p } 0 6 {D5R:C -> D68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D68R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:G -> D67R:C: pairing antiparallel cis Ww/Ww } 0 9 {D67R:C -> D6R:G: pairing antiparallel cis Ww/Ww } 0 10 {D6R:G -> D68R:G: outward } 0 11 {D68R:G -> D6R:G: outward } 0 12 {D67R:C -> D68R:G: adjacent_5p } 0 13 {D68R:G -> D67R:C: adjacent_3p } 0 14 {D68R:G -> D69R:U: adjacent_5p upward } 0 15 {D69R:U -> D68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 D5R:C 0 1 D6R:G 0 2 D7R:G 0 3 D66R:C 0 4 D67R:C 0 5 D68R:G 0 [Edges] 0 {D5R:C -> D6R:G: adjacent_5p } 0 1 {D6R:G -> D5R:C: adjacent_3p } 0 2 {D5R:C -> D68R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D68R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D6R:G -> D7R:G: adjacent_5p upward } 0 5 {D7R:G -> D6R:G: adjacent_3p downward } 0 6 {D6R:G -> D67R:C: pairing antiparallel cis Ww/Ww } 0 7 {D67R:C -> D6R:G: pairing antiparallel cis Ww/Ww } 0 8 {D6R:G -> D68R:G: outward } 0 9 {D68R:G -> D6R:G: outward } 0 10 {D7R:G -> D66R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D66R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D66R:C -> D67R:C: adjacent_5p upward } 0 13 {D67R:C -> D66R:C: adjacent_3p downward } 0 14 {D67R:C -> D68R:G: adjacent_5p } 0 15 {D68R:G -> D67R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 D10R:G 0 1 D11R:U 0 2 D12R:U 0 3 D23R:A 0 4 D24R:A 0 5 D25R:U 0 [Edges] 0 {D10R:G -> D11R:U: adjacent_5p upward } 0 1 {D11R:U -> D10R:G: adjacent_3p downward } 0 2 {D10R:G -> D25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D25R:U -> D10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D11R:U -> D12R:U: adjacent_5p upward } 0 5 {D12R:U -> D11R:U: adjacent_3p downward } 0 6 {D11R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D24R:A -> D11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D23R:A -> D24R:A: adjacent_5p upward } 0 11 {D24R:A -> D23R:A: adjacent_3p downward } 0 12 {D24R:A -> D25R:U: adjacent_5p upward } 0 13 {D25R:U -> D24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D11R:U 0 1 D12R:U 0 2 D13R:C 0 3 D22R:G 0 4 D23R:A 0 5 D24R:A 0 [Edges] 0 {D11R:U -> D12R:U: adjacent_5p upward } 0 1 {D12R:U -> D11R:U: adjacent_3p downward } 0 2 {D11R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D24R:A -> D11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D12R:U -> D13R:C: adjacent_5p upward } 0 5 {D13R:C -> D12R:U: adjacent_3p downward } 0 6 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D22R:G -> D23R:A: adjacent_5p upward } 0 11 {D23R:A -> D22R:G: adjacent_3p downward } 0 12 {D23R:A -> D24R:A: adjacent_5p upward } 0 13 {D24R:A -> D23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D12R:U 0 1 D13R:C 0 2 D14R:A 0 3 D21R:A 0 4 D22R:G 0 5 D23R:A 0 [Edges] 0 {D12R:U -> D13R:C: adjacent_5p upward } 0 1 {D13R:C -> D12R:U: adjacent_3p downward } 0 2 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D13R:C -> D14R:A: adjacent_5p } 0 5 {D14R:A -> D13R:C: adjacent_3p } 0 6 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D14R:A -> D21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 9 {D21R:A -> D14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 10 {D14R:A -> D22R:G: outward } 0 11 {D22R:G -> D14R:A: outward } 0 12 {D21R:A -> D22R:G: adjacent_5p } 0 13 {D22R:G -> D21R:A: adjacent_3p } 0 14 {D22R:G -> D23R:A: adjacent_5p upward } 0 15 {D23R:A -> D22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 D26R:A 0 1 D27R:C 0 2 D28R:C 0 3 D42R:G 0 4 D43R:G 0 5 D44R:G 0 [Edges] 0 {D26R:A -> D27R:C: adjacent_5p upward } 0 1 {D27R:C -> D26R:A: adjacent_3p downward } 0 2 {D26R:A -> D44R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {D44R:G -> D26R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {D27R:C -> D28R:C: adjacent_5p upward } 0 5 {D28R:C -> D27R:C: adjacent_3p downward } 0 6 {D27R:C -> D43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D43R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {D42R:G -> D43R:G: adjacent_5p upward } 0 11 {D43R:G -> D42R:G: adjacent_3p downward } 0 12 {D43R:G -> D44R:G: adjacent_5p upward } 0 13 {D44R:G -> D43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D27R:C 0 1 D28R:C 0 2 D29R:U 0 3 D41R:A 0 4 D42R:G 0 5 D43R:G 0 [Edges] 0 {D27R:C -> D28R:C: adjacent_5p upward } 0 1 {D28R:C -> D27R:C: adjacent_3p downward } 0 2 {D27R:C -> D43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D43R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D28R:C -> D29R:U: adjacent_5p } 0 5 {D29R:U -> D28R:C: adjacent_3p } 0 6 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D41R:A -> D42R:G: adjacent_5p upward } 0 11 {D42R:G -> D41R:A: adjacent_3p downward } 0 12 {D42R:G -> D43R:G: adjacent_5p upward } 0 13 {D43R:G -> D42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D28R:C 0 1 D29R:U 0 2 D30R:G 0 3 D40R:C 0 4 D41R:A 0 5 D42R:G 0 [Edges] 0 {D28R:C -> D29R:U: adjacent_5p } 0 1 {D29R:U -> D28R:C: adjacent_3p } 0 2 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D29R:U -> D30R:G: adjacent_5p } 0 5 {D30R:G -> D29R:U: adjacent_3p } 0 6 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D30R:G -> D41R:A: outward } 0 11 {D41R:A -> D30R:G: outward } 0 12 {D40R:C -> D41R:A: adjacent_5p upward } 0 13 {D41R:A -> D40R:C: adjacent_3p downward } 0 14 {D41R:A -> D42R:G: adjacent_5p upward } 0 15 {D42R:G -> D41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 D29R:U 0 1 D30R:G 0 2 D31R:C 0 3 D39R:G 0 4 D40R:C 0 5 D41R:A 0 [Edges] 0 {D29R:U -> D30R:G: adjacent_5p } 0 1 {D30R:G -> D29R:U: adjacent_3p } 0 2 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D30R:G -> D31R:C: adjacent_5p upward } 0 5 {D31R:C -> D30R:G: adjacent_3p downward } 0 6 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D30R:G -> D41R:A: outward } 0 9 {D41R:A -> D30R:G: outward } 0 10 {D31R:C -> D39R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D39R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D39R:G -> D40R:C: adjacent_5p upward } 0 13 {D40R:C -> D39R:G: adjacent_3p downward } 0 14 {D40R:C -> D41R:A: adjacent_5p upward } 0 15 {D41R:A -> D40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 D30R:G 0 1 D31R:C 0 2 D32R:C 0 3 D38R:C 0 4 D39R:G 0 5 D40R:C 0 [Edges] 0 {D30R:G -> D31R:C: adjacent_5p upward } 0 1 {D31R:C -> D30R:G: adjacent_3p downward } 0 2 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D31R:C -> D32R:C: adjacent_5p upward } 0 5 {D32R:C -> D31R:C: adjacent_3p downward } 0 6 {D31R:C -> D39R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D39R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D32R:C -> D38R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 9 {D38R:C -> D32R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 10 {D38R:C -> D39R:G: adjacent_5p upward } 0 11 {D39R:G -> D38R:C: adjacent_3p downward } 0 12 {D39R:G -> D40R:C: adjacent_5p upward } 0 13 {D40R:C -> D39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D50R:C 0 1 D51R:G 0 2 D52R:G 0 3 D62R:C 0 4 D63R:C 0 5 D64R:G 0 [Edges] 0 {D50R:C -> D51R:G: adjacent_5p } 0 1 {D51R:G -> D50R:C: adjacent_3p } 0 2 {D50R:C -> D64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D64R:G -> D50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D51R:G -> D52R:G: adjacent_5p upward } 0 5 {D52R:G -> D51R:G: adjacent_3p downward } 0 6 {D51R:G -> D63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D63R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D51R:G -> D64R:G: outward } 0 9 {D64R:G -> D51R:G: outward } 0 10 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D62R:C -> D63R:C: adjacent_5p upward } 0 13 {D63R:C -> D62R:C: adjacent_3p downward } 0 14 {D63R:C -> D64R:G: adjacent_5p upward } 0 15 {D64R:G -> D63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 D51R:G 0 1 D52R:G 0 2 D53R:G 0 3 D61R:C 0 4 D62R:C 0 5 D63R:C 0 [Edges] 0 {D51R:G -> D52R:G: adjacent_5p upward } 0 1 {D52R:G -> D51R:G: adjacent_3p downward } 0 2 {D51R:G -> D63R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D63R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D52R:G -> D53R:G: adjacent_5p upward } 0 5 {D53R:G -> D52R:G: adjacent_3p downward } 0 6 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D61R:C -> D62R:C: adjacent_5p } 0 11 {D62R:C -> D61R:C: adjacent_3p } 0 12 {D62R:C -> D63R:C: adjacent_5p upward } 0 13 {D63R:C -> D62R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:C 0 2 A3R:G 0 3 A70R:C 0 4 A71R:G 0 5 A72R:C 0 [Edges] 0 {A1R:G -> A2R:C: adjacent_5p upward } 0 1 {A2R:C -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A72R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:C -> A3R:G: adjacent_5p upward } 0 5 {A3R:G -> A2R:C: adjacent_3p downward } 0 6 {A2R:C -> A71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A71R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A3R:G -> A71R:G: outward } 0 11 {A71R:G -> A3R:G: outward } 0 12 {A70R:C -> A71R:G: adjacent_5p upward } 0 13 {A71R:G -> A70R:C: adjacent_3p downward } 0 14 {A71R:G -> A72R:C: adjacent_5p upward } 0 15 {A72R:C -> A71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:G 0 3 A69R:U 0 4 A70R:C 0 5 A71R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> A71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A71R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A71R:G: outward } 0 9 {A71R:G -> A3R:G: outward } 0 10 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A69R:U -> A70R:C: adjacent_5p } 0 13 {A70R:C -> A69R:U: adjacent_3p } 0 14 {A70R:C -> A71R:G: adjacent_5p upward } 0 15 {A71R:G -> A70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:A 0 3 A68R:U 0 4 A69R:U 0 5 A70R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A68R:U -> A69R:U: adjacent_5p upward } 0 11 {A69R:U -> A68R:U: adjacent_3p downward } 0 12 {A69R:U -> A70R:C: adjacent_5p } 0 13 {A70R:C -> A69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:U 0 3 A67R:A 0 4 A68R:U 0 5 A69R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A67R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A67R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A67R:A -> A68R:U: adjacent_5p upward } 0 11 {A68R:U -> A67R:A: adjacent_3p downward } 0 12 {A68R:U -> A69R:U: adjacent_5p upward } 0 13 {A69R:U -> A68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:U 0 2 A7R:U 0 3 A66R:A 0 4 A67R:A 0 5 A68R:U 0 [Edges] 0 {A5R:A -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:U -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> A67R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A67R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> A66R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A66R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A66R:A -> A67R:A: adjacent_5p upward } 0 11 {A67R:A -> A66R:A: adjacent_3p downward } 0 12 {A67R:A -> A68R:U: adjacent_5p upward } 0 13 {A68R:U -> A67R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:U 0 2 A13R:C 0 3 A22R:G 0 4 A23R:A 0 5 A24R:G 0 [Edges] 0 {A11R:C -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:U -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:U: adjacent_3p downward } 0 6 {A12R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A22R:G -> A23R:A: adjacent_5p upward } 0 11 {A23R:A -> A22R:G: adjacent_3p downward } 0 12 {A23R:A -> A24R:G: adjacent_5p upward } 0 13 {A24R:G -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A27R:C 0 1 A28R:C 0 2 A29R:A 0 3 A41R:U 0 4 A42R:G 0 5 A43R:G 0 [Edges] 0 {A27R:C -> A28R:C: adjacent_5p upward } 0 1 {A28R:C -> A27R:C: adjacent_3p downward } 0 2 {A27R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:C -> A29R:A: adjacent_5p } 0 5 {A29R:A -> A28R:C: adjacent_3p } 0 6 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A29R:A -> A42R:G: outward } 0 11 {A42R:G -> A29R:A: outward } 0 12 {A41R:U -> A42R:G: adjacent_5p } 0 13 {A42R:G -> A41R:U: adjacent_3p } 0 14 {A42R:G -> A43R:G: adjacent_5p upward } 0 15 {A43R:G -> A42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A50R:U 0 1 A51R:G 0 2 A52R:U 0 3 A62R:A 0 4 A63R:C 0 5 A64R:A 0 [Edges] 0 {A50R:U -> A51R:G: adjacent_5p upward } 0 1 {A51R:G -> A50R:U: adjacent_3p downward } 0 2 {A50R:U -> A64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A64R:A -> A50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A51R:G -> A52R:U: adjacent_5p upward } 0 5 {A52R:U -> A51R:G: adjacent_3p downward } 0 6 {A51R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A63R:C -> A51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A51R:G -> A64R:A: outward } 0 9 {A64R:A -> A51R:G: outward } 0 10 {A52R:U -> A62R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A62R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A62R:A -> A63R:C: adjacent_5p upward } 0 13 {A63R:C -> A62R:A: adjacent_3p downward } 0 14 {A63R:C -> A64R:A: adjacent_5p upward } 0 15 {A64R:A -> A63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A51R:G 0 1 A52R:U 0 2 A53R:G 0 3 A61R:C 0 4 A62R:A 0 5 A63R:C 0 [Edges] 0 {A51R:G -> A52R:U: adjacent_5p upward } 0 1 {A52R:U -> A51R:G: adjacent_3p downward } 0 2 {A51R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A63R:C -> A51R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A52R:U -> A53R:G: adjacent_5p } 0 5 {A53R:G -> A52R:U: adjacent_3p } 0 6 {A52R:U -> A62R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A62R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A53R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A61R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A53R:G -> A62R:A: outward } 0 11 {A62R:A -> A53R:G: outward } 0 12 {A61R:C -> A62R:A: adjacent_5p } 0 13 {A62R:A -> A61R:C: adjacent_3p } 0 14 {A62R:A -> A63R:C: adjacent_5p upward } 0 15 {A63R:C -> A62R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:U 0 3 B5R:G 0 4 B6R:C 0 5 B7R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B7R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> B5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B5R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B5R:G -> B6R:C: adjacent_5p upward } 0 11 {B6R:C -> B5R:G: adjacent_3p downward } 0 12 {B6R:C -> B7R:U: adjacent_5p } 0 13 {B7R:U -> B6R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:G 0 3 B4R:U 0 4 B5R:G 0 5 B6R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> B5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B5R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:G -> B4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B4R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A5R:G -> B5R:G: outward } 0 11 {B5R:G -> A5R:G: outward } 0 12 {B4R:U -> B5R:G: adjacent_5p } 0 13 {B5R:G -> B4R:U: adjacent_3p } 0 14 {B5R:G -> B6R:C: adjacent_5p upward } 0 15 {B6R:C -> B5R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 B3R:G 0 4 B4R:U 0 5 B5R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> B5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B5R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B4R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:G -> B5R:G: outward } 0 9 {B5R:G -> A5R:G: outward } 0 10 {A6R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B3R:G -> B4R:U: adjacent_5p upward } 0 13 {B4R:U -> B3R:G: adjacent_3p downward } 0 14 {B4R:U -> B5R:G: adjacent_5p } 0 15 {B5R:G -> B4R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:U 0 3 B2R:A 0 4 B3R:G 0 5 B4R:U 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> B4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B4R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B3R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> B2R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B2R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B2R:A -> B3R:G: adjacent_5p upward } 0 11 {B3R:G -> B2R:A: adjacent_3p downward } 0 12 {B3R:G -> B4R:U: adjacent_5p upward } 0 13 {B4R:U -> B3R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 B5R:U 0 4 B6R:G 0 5 B7R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B5R:U: pairing antiparallel cis 84 Ww/Bs } 0 9 {B5R:U -> A4R:G: pairing antiparallel cis 84 Bs/Ww } 0 10 {A4R:G -> B6R:G: outward } 0 11 {B6R:G -> A4R:G: outward } 0 12 {B5R:U -> B6R:G: adjacent_5p } 0 13 {B6R:G -> B5R:U: adjacent_3p } 0 14 {B6R:G -> B7R:C: adjacent_5p upward } 0 15 {B7R:C -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 B4R:G 0 4 B5R:U 0 5 B6R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B5R:U: pairing antiparallel cis 84 Ww/Bs } 0 7 {B5R:U -> A4R:G: pairing antiparallel cis 84 Bs/Ww } 0 8 {A4R:G -> B6R:G: outward } 0 9 {B6R:G -> A4R:G: outward } 0 10 {A5R:U -> B4R:G: pairing antiparallel cis 84 Bs/Ww } 0 11 {B4R:G -> A5R:U: pairing antiparallel cis 84 Ww/Bs } 0 12 {B4R:G -> B5R:U: adjacent_5p upward } 0 13 {B5R:U -> B4R:G: adjacent_3p downward } 0 14 {B5R:U -> B6R:G: adjacent_5p } 0 15 {B6R:G -> B5R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:G 0 3 B3R:C 0 4 B4R:G 0 5 B5R:U 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B5R:U: pairing antiparallel cis 84 Ww/Bs } 0 3 {B5R:U -> A4R:G: pairing antiparallel cis 84 Bs/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:U: adjacent_3p } 0 6 {A5R:U -> B4R:G: pairing antiparallel cis 84 Bs/Ww } 0 7 {B4R:G -> A5R:U: pairing antiparallel cis 84 Ww/Bs } 0 8 {A6R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B3R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A6R:G -> B4R:G: outward } 0 11 {B4R:G -> A6R:G: outward } 0 12 {B3R:C -> B4R:G: adjacent_5p upward } 0 13 {B4R:G -> B3R:C: adjacent_3p downward } 0 14 {B4R:G -> B5R:U: adjacent_5p upward } 0 15 {B5R:U -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:C 0 3 B2R:G 0 4 B3R:C 0 5 B4R:G 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:U: adjacent_3p } 0 2 {A5R:U -> B4R:G: pairing antiparallel cis 84 Bs/Ww } 0 3 {B4R:G -> A5R:U: pairing antiparallel cis 84 Ww/Bs } 0 4 {A6R:G -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B3R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> B4R:G: outward } 0 9 {B4R:G -> A6R:G: outward } 0 10 {A7R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B2R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B2R:G -> B3R:C: adjacent_5p upward } 0 13 {B3R:C -> B2R:G: adjacent_3p downward } 0 14 {B3R:C -> B4R:G: adjacent_5p upward } 0 15 {B4R:G -> B3R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . MOLECULE: [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:A 0 2 B4R:C 0 3 B27R:G 0 4 B28R:U 0 5 B29R:C 0 [Edges] 0 {B2R:G -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B29R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B28R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B27R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B27R:G -> B28R:U: adjacent_5p upward } 0 11 {B28R:U -> B27R:G: adjacent_3p downward } 0 12 {B28R:U -> B29R:C: adjacent_5p upward } 0 13 {B29R:C -> B28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:C 0 2 B5R:A 0 3 B26R:U 0 4 B27R:G 0 5 B28R:U 0 [Edges] 0 {B3R:A -> B4R:C: adjacent_5p upward } 0 1 {B4R:C -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B28R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:C -> B5R:A: adjacent_5p } 0 5 {B5R:A -> B4R:C: adjacent_3p } 0 6 {B4R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B27R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {B5R:A -> B27R:G: outward } 0 11 {B27R:G -> B5R:A: outward } 0 12 {B26R:U -> B27R:G: adjacent_5p upward } 0 13 {B27R:G -> B26R:U: adjacent_3p downward } 0 14 {B27R:G -> B28R:U: adjacent_5p upward } 0 15 {B28R:U -> B27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B4R:C 0 1 B5R:A 0 2 B6R:G 0 3 B25R:C 0 4 B26R:U 0 5 B27R:G 0 [Edges] 0 {B4R:C -> B5R:A: adjacent_5p } 0 1 {B5R:A -> B4R:C: adjacent_3p } 0 2 {B4R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:A -> B6R:G: adjacent_5p upward } 0 5 {B6R:G -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {B5R:A -> B27R:G: outward } 0 9 {B27R:G -> B5R:A: outward } 0 10 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B25R:C -> B26R:U: adjacent_5p upward } 0 13 {B26R:U -> B25R:C: adjacent_3p downward } 0 14 {B26R:U -> B27R:G: adjacent_5p upward } 0 15 {B27R:G -> B26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B5R:A 0 1 B6R:G 0 2 B7R:C 0 3 B24R:G 0 4 B25R:C 0 5 B26R:U 0 [Edges] 0 {B5R:A -> B6R:G: adjacent_5p upward } 0 1 {B6R:G -> B5R:A: adjacent_3p downward } 0 2 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {B6R:G -> B7R:C: adjacent_5p upward } 0 5 {B7R:C -> B6R:G: adjacent_3p downward } 0 6 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B24R:G -> B25R:C: adjacent_5p upward } 0 11 {B25R:C -> B24R:G: adjacent_3p downward } 0 12 {B25R:C -> B26R:U: adjacent_5p upward } 0 13 {B26R:U -> B25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:C 0 2 B8R:U 0 3 B23R:A 0 4 B24R:G 0 5 B25R:C 0 [Edges] 0 {B6R:G -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:C -> B8R:U: adjacent_5p } 0 5 {B8R:U -> B7R:C: adjacent_3p } 0 6 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B23R:A -> B24R:G: adjacent_5p upward } 0 11 {B24R:G -> B23R:A: adjacent_3p downward } 0 12 {B24R:G -> B25R:C: adjacent_5p upward } 0 13 {B25R:C -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B7R:C 0 1 B8R:U 0 2 B9R:G 0 3 B22R:C 0 4 B23R:A 0 5 B24R:G 0 [Edges] 0 {B7R:C -> B8R:U: adjacent_5p } 0 1 {B8R:U -> B7R:C: adjacent_3p } 0 2 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B8R:U -> B9R:G: adjacent_5p upward } 0 5 {B9R:G -> B8R:U: adjacent_3p downward } 0 6 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B9R:G -> B23R:A: outward } 0 11 {B23R:A -> B9R:G: outward } 0 12 {B22R:C -> B23R:A: adjacent_5p } 0 13 {B23R:A -> B22R:C: adjacent_3p } 0 14 {B23R:A -> B24R:G: adjacent_5p upward } 0 15 {B24R:G -> B23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B8R:U 0 1 B9R:G 0 2 B10R:U 0 3 B21R:A 0 4 B22R:C 0 5 B23R:A 0 [Edges] 0 {B8R:U -> B9R:G: adjacent_5p upward } 0 1 {B9R:G -> B8R:U: adjacent_3p downward } 0 2 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B9R:G -> B10R:U: adjacent_5p upward } 0 5 {B10R:U -> B9R:G: adjacent_3p downward } 0 6 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B9R:G -> B23R:A: outward } 0 9 {B23R:A -> B9R:G: outward } 0 10 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B21R:A -> B22R:C: adjacent_5p } 0 13 {B22R:C -> B21R:A: adjacent_3p } 0 14 {B22R:C -> B23R:A: adjacent_5p } 0 15 {B23R:A -> B22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B9R:G 0 1 B10R:U 0 2 B11R:C 0 3 B20R:G 0 4 B21R:A 0 5 B22R:C 0 [Edges] 0 {B9R:G -> B10R:U: adjacent_5p upward } 0 1 {B10R:U -> B9R:G: adjacent_3p downward } 0 2 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B10R:U -> B11R:C: adjacent_5p } 0 5 {B11R:C -> B10R:U: adjacent_3p } 0 6 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B11R:C -> B21R:A: outward } 0 11 {B21R:A -> B11R:C: outward } 0 12 {B20R:G -> B21R:A: adjacent_5p upward } 0 13 {B21R:A -> B20R:G: adjacent_3p downward } 0 14 {B21R:A -> B22R:C: adjacent_5p } 0 15 {B22R:C -> B21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B10R:U 0 1 B11R:C 0 2 B12R:C 0 3 B19R:G 0 4 B20R:G 0 5 B21R:A 0 [Edges] 0 {B10R:U -> B11R:C: adjacent_5p } 0 1 {B11R:C -> B10R:U: adjacent_3p } 0 2 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B11R:C -> B12R:C: adjacent_5p } 0 5 {B12R:C -> B11R:C: adjacent_3p } 0 6 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B11R:C -> B21R:A: outward } 0 9 {B21R:A -> B11R:C: outward } 0 10 {B12R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B19R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B12R:C -> B20R:G: outward } 0 13 {B20R:G -> B12R:C: outward } 0 14 {B19R:G -> B20R:G: adjacent_5p upward } 0 15 {B20R:G -> B19R:G: adjacent_3p downward } 0 16 {B20R:G -> B21R:A: adjacent_5p upward } 0 17 {B21R:A -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . [GraphModel] [Vertices] 0 B11R:C 0 1 B12R:C 0 2 B13R:C 0 3 B18R:G 0 4 B19R:G 0 5 B20R:G 0 [Edges] 0 {B11R:C -> B12R:C: adjacent_5p } 0 1 {B12R:C -> B11R:C: adjacent_3p } 0 2 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B12R:C -> B13R:C: adjacent_5p } 0 5 {B13R:C -> B12R:C: adjacent_3p } 0 6 {B12R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B12R:C -> B20R:G: outward } 0 9 {B20R:G -> B12R:C: outward } 0 10 {B13R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B18R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B18R:G -> B19R:G: adjacent_5p upward } 0 13 {B19R:G -> B18R:G: adjacent_3p downward } 0 14 {B19R:G -> B20R:G: adjacent_5p upward } 0 15 {B20R:G -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B12R:C 0 1 B13R:C 0 2 B14R:U 0 3 B17R:G 0 4 B18R:G 0 5 B19R:G 0 [Edges] 0 {B12R:C -> B13R:C: adjacent_5p } 0 1 {B13R:C -> B12R:C: adjacent_3p } 0 2 {B12R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B19R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B13R:C -> B14R:U: adjacent_5p upward } 0 5 {B14R:U -> B13R:C: adjacent_3p downward } 0 6 {B13R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B14R:U -> B17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 9 {B17R:G -> B14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 10 {B17R:G -> B18R:G: adjacent_5p upward } 0 11 {B18R:G -> B17R:G: adjacent_3p downward } 0 12 {B18R:G -> B19R:G: adjacent_5p upward } 0 13 {B19R:G -> B18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A1R:U 0 1 A2R:G 0 2 A3R:C 0 3 B17R:G 0 4 B18R:C 0 5 B19R:A 0 [Edges] 0 {A1R:U -> A2R:G: adjacent_5p } 0 1 {A2R:G -> A1R:U: adjacent_3p } 0 2 {A1R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:A -> A1R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2R:G -> B19R:A: outward } 0 9 {B19R:A -> A2R:G: outward } 0 10 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B17R:G -> B18R:C: adjacent_5p upward } 0 13 {B18R:C -> B17R:G: adjacent_3p downward } 0 14 {B18R:C -> B19R:A: adjacent_5p upward } 0 15 {B19R:A -> B18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 B16R:G 0 4 B17R:G 0 5 B18R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B16R:G -> B17R:G: adjacent_5p upward } 0 11 {B17R:G -> B16R:G: adjacent_3p downward } 0 12 {B17R:G -> B18R:C: adjacent_5p upward } 0 13 {B18R:C -> B17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:U 0 3 B15R:A 0 4 B16R:G 0 5 B17R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B15R:A -> B16R:G: adjacent_5p upward } 0 11 {B16R:G -> B15R:A: adjacent_3p downward } 0 12 {B16R:G -> B17R:G: adjacent_5p upward } 0 13 {B17R:G -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:G 0 3 B14R:C 0 4 B15R:A 0 5 B16R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 9 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 10 {B14R:C -> B15R:A: adjacent_5p } 0 11 {B15R:A -> B14R:C: adjacent_3p } 0 12 {B15R:A -> B16R:G: adjacent_5p upward } 0 13 {B16R:G -> B15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:G 0 3 B13R:C 0 4 B14R:C 0 5 B15R:A 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 7 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 8 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B13R:C -> B14R:C: adjacent_5p upward } 0 11 {B14R:C -> B13R:C: adjacent_3p downward } 0 12 {B14R:C -> B15R:A: adjacent_5p } 0 13 {B15R:A -> B14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:C 0 3 B12R:G 0 4 B13R:C 0 5 B14R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 3 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B12R:G -> B13R:C: adjacent_5p upward } 0 11 {B13R:C -> B12R:G: adjacent_3p downward } 0 12 {B13R:C -> B14R:C: adjacent_5p upward } 0 13 {B14R:C -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A9R:G 0 3 B11R:U 0 4 B12R:G 0 5 B13R:C 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> B11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {B11R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {B11R:U -> B12R:G: adjacent_5p } 0 11 {B12R:G -> B11R:U: adjacent_3p } 0 12 {B12R:G -> B13R:C: adjacent_5p upward } 0 13 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 B10R:C 0 4 B11R:U 0 5 B12R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B11R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A10R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B10R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B10R:C -> B11R:U: adjacent_5p upward } 0 11 {B11R:U -> B10R:C: adjacent_3p downward } 0 12 {B11R:U -> B12R:G: adjacent_5p } 0 13 {B12R:G -> B11R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A10R:C 0 4 A11R:A 0 5 A12R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:U: adjacent_3p } 0 6 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A4R:G -> A11R:A: outward } 0 11 {A11R:A -> A4R:G: outward } 0 12 {A10R:C -> A11R:A: adjacent_5p upward } 0 13 {A11R:A -> A10R:C: adjacent_3p downward } 0 14 {A11R:A -> A12R:C: adjacent_5p upward } 0 15 {A12R:C -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A9R:G 0 4 A10R:C 0 5 A11R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A11R:A: outward } 0 9 {A11R:A -> A4R:G: outward } 0 10 {A5R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A9R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A10R:C: adjacent_5p } 0 13 {A10R:C -> A9R:G: adjacent_3p } 0 14 {A10R:C -> A11R:A: adjacent_5p upward } 0 15 {A11R:A -> A10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:A 0 3 A8R:A 0 4 A9R:G 0 5 A10R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A9R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A8R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 9 {A8R:A -> A6R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 10 {A8R:A -> A9R:G: adjacent_5p upward } 0 11 {A9R:G -> A8R:A: adjacent_3p downward } 0 12 {A9R:G -> A10R:C: adjacent_5p } 0 13 {A10R:C -> A9R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A207R:G 0 1 A208R:G 0 2 A209R:U 0 3 A220R:A 0 4 A221R:C 0 5 A222R:C 0 [Edges] 0 {A207R:G -> A208R:G: adjacent_5p upward } 0 1 {A208R:G -> A207R:G: adjacent_3p downward } 0 2 {A207R:G -> A222R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A222R:C -> A207R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A208R:G -> A209R:U: adjacent_5p upward } 0 5 {A209R:U -> A208R:G: adjacent_3p downward } 0 6 {A208R:G -> A221R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A221R:C -> A208R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A209R:U -> A220R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A220R:A -> A209R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A220R:A -> A221R:C: adjacent_5p upward } 0 11 {A221R:C -> A220R:A: adjacent_3p downward } 0 12 {A221R:C -> A222R:C: adjacent_5p } 0 13 {A222R:C -> A221R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A212R:G 0 1 A213R:C 0 2 A214R:A 0 3 A231R:A 0 4 A232R:G 0 5 A233R:C 0 [Edges] 0 {A212R:G -> A213R:C: adjacent_5p upward } 0 1 {A213R:C -> A212R:G: adjacent_3p downward } 0 2 {A212R:G -> A233R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A233R:C -> A212R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A213R:C -> A214R:A: adjacent_5p inward } 0 5 {A214R:A -> A213R:C: adjacent_3p inward } 0 6 {A213R:C -> A232R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A232R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A214R:A -> A231R:A: pairing parallel trans I Ww/Ww } 0 9 {A231R:A -> A214R:A: pairing parallel trans I Ww/Ww } 0 10 {A231R:A -> A232R:G: adjacent_5p upward } 0 11 {A232R:G -> A231R:A: adjacent_3p downward } 0 12 {A232R:G -> A233R:C: adjacent_5p upward } 0 13 {A233R:C -> A232R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A224R:C 0 1 A225R:A 0 2 A226R:G 0 3 B324R:C 0 4 B325R:A 0 5 B326R:G 0 [Edges] 0 {A224R:C -> A225R:A: adjacent_5p } 0 1 {A225R:A -> A224R:C: adjacent_3p } 0 2 {A224R:C -> B326R:G: pairing antiparallel cis one_hbond 125 Ww/Sw } 0 3 {B326R:G -> A224R:C: pairing antiparallel cis one_hbond 125 Sw/Ww } 0 4 {A225R:A -> A226R:G: adjacent_5p } 0 5 {A226R:G -> A225R:A: adjacent_3p } 0 6 {A226R:G -> B324R:C: pairing antiparallel cis one_hbond 125 Sw/Ww } 0 7 {B324R:C -> A226R:G: pairing antiparallel cis one_hbond 125 Ww/Sw } 0 8 {B324R:C -> B325R:A: adjacent_5p } 0 9 {B325R:A -> B324R:C: adjacent_3p } 0 10 {B325R:A -> B326R:G: adjacent_5p } 0 11 {B326R:G -> B325R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 B307R:G 0 1 B308R:G 0 2 B309R:U 0 3 B320R:A 0 4 B321R:C 0 5 B322R:C 0 [Edges] 0 {B307R:G -> B308R:G: adjacent_5p upward } 0 1 {B308R:G -> B307R:G: adjacent_3p downward } 0 2 {B307R:G -> B322R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B322R:C -> B307R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B308R:G -> B309R:U: adjacent_5p upward } 0 5 {B309R:U -> B308R:G: adjacent_3p downward } 0 6 {B308R:G -> B321R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B321R:C -> B308R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B309R:U -> B320R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B320R:A -> B309R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B320R:A -> B321R:C: adjacent_5p upward } 0 11 {B321R:C -> B320R:A: adjacent_3p downward } 0 12 {B321R:C -> B322R:C: adjacent_5p upward } 0 13 {B322R:C -> B321R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B312R:G 0 1 B313R:C 0 2 B314R:A 0 3 B331R:A 0 4 B332R:G 0 5 B333R:C 0 [Edges] 0 {B312R:G -> B313R:C: adjacent_5p upward } 0 1 {B313R:C -> B312R:G: adjacent_3p downward } 0 2 {B312R:G -> B333R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B333R:C -> B312R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B313R:C -> B314R:A: adjacent_5p inward } 0 5 {B314R:A -> B313R:C: adjacent_3p inward } 0 6 {B313R:C -> B332R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B332R:G -> B313R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B314R:A -> B331R:A: pairing parallel trans I Ww/Ww } 0 9 {B331R:A -> B314R:A: pairing parallel trans I Ww/Ww } 0 10 {B331R:A -> B332R:G: adjacent_5p upward } 0 11 {B332R:G -> B331R:A: adjacent_3p downward } 0 12 {B332R:G -> B333R:C: adjacent_5p upward } 0 13 {B333R:C -> B332R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C407R:G 0 1 C408R:G 0 2 C409R:U 0 3 C420R:A 0 4 C421R:C 0 5 C422R:C 0 [Edges] 0 {C407R:G -> C408R:G: adjacent_5p upward } 0 1 {C408R:G -> C407R:G: adjacent_3p downward } 0 2 {C407R:G -> C422R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C422R:C -> C407R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C408R:G -> C409R:U: adjacent_5p upward } 0 5 {C409R:U -> C408R:G: adjacent_3p downward } 0 6 {C408R:G -> C421R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C421R:C -> C408R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C409R:U -> C420R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C420R:A -> C409R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C420R:A -> C421R:C: adjacent_5p upward } 0 11 {C421R:C -> C420R:A: adjacent_3p downward } 0 12 {C421R:C -> C422R:C: adjacent_5p } 0 13 {C422R:C -> C421R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C412R:G 0 1 C413R:C 0 2 C414R:A 0 3 C431R:A 0 4 C432R:G 0 5 C433R:C 0 [Edges] 0 {C412R:G -> C413R:C: adjacent_5p upward } 0 1 {C413R:C -> C412R:G: adjacent_3p downward } 0 2 {C412R:G -> C433R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C433R:C -> C412R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C413R:C -> C414R:A: adjacent_5p inward } 0 5 {C414R:A -> C413R:C: adjacent_3p inward } 0 6 {C413R:C -> C432R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C432R:G -> C413R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C414R:A -> C431R:A: pairing parallel trans I Ww/Ww } 0 9 {C431R:A -> C414R:A: pairing parallel trans I Ww/Ww } 0 10 {C431R:A -> C432R:G: adjacent_5p upward } 0 11 {C432R:G -> C431R:A: adjacent_3p downward } 0 12 {C432R:G -> C433R:C: adjacent_5p upward } 0 13 {C433R:C -> C432R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 C424R:C 0 1 C425R:A 0 2 C426R:G 0 3 D524R:C 0 4 D525R:A 0 5 D526R:G 0 [Edges] 0 {C424R:C -> C425R:A: adjacent_5p } 0 1 {C425R:A -> C424R:C: adjacent_3p } 0 2 {C424R:C -> D526R:G: pairing antiparallel cis one_hbond 125 Ww/Sw } 0 3 {D526R:G -> C424R:C: pairing antiparallel cis one_hbond 125 Sw/Ww } 0 4 {C425R:A -> C426R:G: adjacent_5p } 0 5 {C426R:G -> C425R:A: adjacent_3p } 0 6 {C426R:G -> D524R:C: pairing antiparallel cis one_hbond 125 Sw/Ww } 0 7 {D524R:C -> C426R:G: pairing antiparallel cis one_hbond 125 Ww/Sw } 0 8 {D524R:C -> D525R:A: adjacent_5p } 0 9 {D525R:A -> D524R:C: adjacent_3p } 0 10 {D525R:A -> D526R:G: adjacent_5p } 0 11 {D526R:G -> D525R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 D507R:G 0 1 D508R:G 0 2 D509R:U 0 3 D520R:A 0 4 D521R:C 0 5 D522R:C 0 [Edges] 0 {D507R:G -> D508R:G: adjacent_5p upward } 0 1 {D508R:G -> D507R:G: adjacent_3p downward } 0 2 {D507R:G -> D522R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D522R:C -> D507R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D508R:G -> D509R:U: adjacent_5p upward } 0 5 {D509R:U -> D508R:G: adjacent_3p downward } 0 6 {D508R:G -> D521R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D521R:C -> D508R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D509R:U -> D520R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D520R:A -> D509R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D520R:A -> D521R:C: adjacent_5p upward } 0 11 {D521R:C -> D520R:A: adjacent_3p downward } 0 12 {D521R:C -> D522R:C: adjacent_5p upward } 0 13 {D522R:C -> D521R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D512R:G 0 1 D513R:C 0 2 D514R:A 0 3 D531R:A 0 4 D532R:G 0 5 D533R:C 0 [Edges] 0 {D512R:G -> D513R:C: adjacent_5p upward } 0 1 {D513R:C -> D512R:G: adjacent_3p downward } 0 2 {D512R:G -> D533R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D533R:C -> D512R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D513R:C -> D514R:A: adjacent_5p inward } 0 5 {D514R:A -> D513R:C: adjacent_3p inward } 0 6 {D513R:C -> D532R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D532R:G -> D513R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D514R:A -> D531R:A: pairing parallel trans I Ww/Ww } 0 9 {D531R:A -> D514R:A: pairing parallel trans I Ww/Ww } 0 10 {D531R:A -> D532R:G: adjacent_5p upward } 0 11 {D532R:G -> D531R:A: adjacent_3p downward } 0 12 {D532R:G -> D533R:C: adjacent_5p upward } 0 13 {D533R:C -> D532R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 E107R:G 0 1 E108R:G 0 2 E109R:U 0 3 E120R:A 0 4 E121R:C 0 5 E122R:C 0 [Edges] 0 {E107R:G -> E108R:G: adjacent_5p upward } 0 1 {E108R:G -> E107R:G: adjacent_3p downward } 0 2 {E107R:G -> E122R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E122R:C -> E107R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E108R:G -> E109R:U: adjacent_5p upward } 0 5 {E109R:U -> E108R:G: adjacent_3p downward } 0 6 {E108R:G -> E121R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E121R:C -> E108R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E109R:U -> E120R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {E120R:A -> E109R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {E120R:A -> E121R:C: adjacent_5p upward } 0 11 {E121R:C -> E120R:A: adjacent_3p downward } 0 12 {E121R:C -> E122R:C: adjacent_5p } 0 13 {E122R:C -> E121R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 E112R:G 0 1 E113R:C 0 2 E114R:A 0 3 E131R:A 0 4 E132R:G 0 5 E133R:C 0 [Edges] 0 {E112R:G -> E113R:C: adjacent_5p upward } 0 1 {E113R:C -> E112R:G: adjacent_3p downward } 0 2 {E112R:G -> E133R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E133R:C -> E112R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E113R:C -> E114R:A: adjacent_5p inward } 0 5 {E114R:A -> E113R:C: adjacent_3p inward } 0 6 {E113R:C -> E132R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E132R:G -> E113R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E114R:A -> E131R:A: pairing parallel trans I Ww/Ww } 0 9 {E131R:A -> E114R:A: pairing parallel trans I Ww/Ww } 0 10 {E131R:A -> E132R:G: adjacent_5p upward } 0 11 {E132R:G -> E131R:A: adjacent_3p downward } 0 12 {E132R:G -> E133R:C: adjacent_5p upward } 0 13 {E133R:C -> E132R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B903R:G 0 1 B904R:G 0 2 B905R:G 0 3 B968R:C 0 4 B969R:C 0 5 B970R:C 0 [Edges] 0 {B903R:G -> B904R:G: adjacent_5p upward } 0 1 {B904R:G -> B903R:G: adjacent_3p downward } 0 2 {B903R:G -> B970R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B970R:C -> B903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B904R:G -> B905R:G: adjacent_5p upward } 0 5 {B905R:G -> B904R:G: adjacent_3p downward } 0 6 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B968R:C -> B969R:C: adjacent_5p upward } 0 11 {B969R:C -> B968R:C: adjacent_3p downward } 0 12 {B969R:C -> B970R:C: adjacent_5p } 0 13 {B970R:C -> B969R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B904R:G 0 1 B905R:G 0 2 B906R:U 0 3 B967R:A 0 4 B968R:C 0 5 B969R:C 0 [Edges] 0 {B904R:G -> B905R:G: adjacent_5p upward } 0 1 {B905R:G -> B904R:G: adjacent_3p downward } 0 2 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B905R:G -> B906R:U: adjacent_5p upward } 0 5 {B906R:U -> B905R:G: adjacent_3p downward } 0 6 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B967R:A -> B968R:C: adjacent_5p upward } 0 11 {B968R:C -> B967R:A: adjacent_3p downward } 0 12 {B968R:C -> B969R:C: adjacent_5p upward } 0 13 {B969R:C -> B968R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B905R:G 0 1 B906R:U 0 2 B907R:A 0 3 B966R:U 0 4 B967R:A 0 5 B968R:C 0 [Edges] 0 {B905R:G -> B906R:U: adjacent_5p upward } 0 1 {B906R:U -> B905R:G: adjacent_3p downward } 0 2 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B906R:U -> B907R:A: adjacent_5p upward } 0 5 {B907R:A -> B906R:U: adjacent_3p downward } 0 6 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B907R:A -> B966R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B966R:U -> B907R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B907R:A -> B967R:A: outward } 0 11 {B967R:A -> B907R:A: outward } 0 12 {B966R:U -> B967R:A: adjacent_5p } 0 13 {B967R:A -> B966R:U: adjacent_3p } 0 14 {B967R:A -> B968R:C: adjacent_5p upward } 0 15 {B968R:C -> B967R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B910R:G 0 1 B911R:C 0 2 B912R:C 0 3 B923R:G 0 4 B924R:G 0 5 B925R:C 0 [Edges] 0 {B910R:G -> B911R:C: adjacent_5p upward } 0 1 {B911R:C -> B910R:G: adjacent_3p downward } 0 2 {B910R:G -> B925R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B925R:C -> B910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B911R:C -> B912R:C: adjacent_5p upward } 0 5 {B912R:C -> B911R:C: adjacent_3p downward } 0 6 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B923R:G -> B924R:G: adjacent_5p upward } 0 11 {B924R:G -> B923R:G: adjacent_3p downward } 0 12 {B924R:G -> B925R:C: adjacent_5p upward } 0 13 {B925R:C -> B924R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B911R:C 0 1 B912R:C 0 2 B913R:A 0 3 B922R:A 0 4 B923R:G 0 5 B924R:G 0 [Edges] 0 {B911R:C -> B912R:C: adjacent_5p upward } 0 1 {B912R:C -> B911R:C: adjacent_3p downward } 0 2 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B912R:C -> B913R:A: adjacent_5p upward } 0 5 {B913R:A -> B912R:C: adjacent_3p downward } 0 6 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 9 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 10 {B922R:A -> B923R:G: adjacent_5p upward } 0 11 {B923R:G -> B922R:A: adjacent_3p downward } 0 12 {B923R:G -> B924R:G: adjacent_5p upward } 0 13 {B924R:G -> B923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B912R:C 0 1 B913R:A 0 2 B914R:A 0 3 B921R:A 0 4 B922R:A 0 5 B923R:G 0 [Edges] 0 {B912R:C -> B913R:A: adjacent_5p upward } 0 1 {B913R:A -> B912R:C: adjacent_3p downward } 0 2 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B913R:A -> B914R:A: adjacent_5p } 0 5 {B914R:A -> B913R:A: adjacent_3p } 0 6 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 7 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 8 {B914R:A -> B921R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 9 {B921R:A -> B914R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 10 {B914R:A -> B922R:A: outward } 0 11 {B922R:A -> B914R:A: outward } 0 12 {B921R:A -> B922R:A: adjacent_5p } 0 13 {B922R:A -> B921R:A: adjacent_3p } 0 14 {B922R:A -> B923R:G: adjacent_5p upward } 0 15 {B923R:G -> B922R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B926R:A 0 1 B927R:C 0 2 B928R:C 0 3 B942R:G 0 4 B943R:G 0 5 B944R:C 0 [Edges] 0 {B926R:A -> B927R:C: adjacent_5p upward } 0 1 {B927R:C -> B926R:A: adjacent_3p downward } 0 2 {B926R:A -> B944R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 3 {B944R:C -> B926R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 4 {B927R:C -> B928R:C: adjacent_5p upward } 0 5 {B928R:C -> B927R:C: adjacent_3p downward } 0 6 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B942R:G -> B943R:G: adjacent_5p upward } 0 11 {B943R:G -> B942R:G: adjacent_3p downward } 0 12 {B943R:G -> B944R:C: adjacent_5p upward } 0 13 {B944R:C -> B943R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B927R:C 0 1 B928R:C 0 2 B929R:G 0 3 B941R:C 0 4 B942R:G 0 5 B943R:G 0 [Edges] 0 {B927R:C -> B928R:C: adjacent_5p upward } 0 1 {B928R:C -> B927R:C: adjacent_3p downward } 0 2 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B928R:C -> B929R:G: adjacent_5p } 0 5 {B929R:G -> B928R:C: adjacent_3p } 0 6 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B929R:G -> B942R:G: outward } 0 11 {B942R:G -> B929R:G: outward } 0 12 {B941R:C -> B942R:G: adjacent_5p } 0 13 {B942R:G -> B941R:C: adjacent_3p } 0 14 {B942R:G -> B943R:G: adjacent_5p upward } 0 15 {B943R:G -> B942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B928R:C 0 1 B929R:G 0 2 B930R:G 0 3 B940R:C 0 4 B941R:C 0 5 B942R:G 0 [Edges] 0 {B928R:C -> B929R:G: adjacent_5p } 0 1 {B929R:G -> B928R:C: adjacent_3p } 0 2 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B929R:G -> B930R:G: adjacent_5p upward } 0 5 {B930R:G -> B929R:G: adjacent_3p downward } 0 6 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B942R:G: outward } 0 9 {B942R:G -> B929R:G: outward } 0 10 {B930R:G -> B940R:C: pairing antiparallel cis 127 Ww/Ws } 0 11 {B940R:C -> B930R:G: pairing antiparallel cis 127 Ws/Ww } 0 12 {B940R:C -> B941R:C: adjacent_5p } 0 13 {B941R:C -> B940R:C: adjacent_3p } 0 14 {B941R:C -> B942R:G: adjacent_5p } 0 15 {B942R:G -> B941R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B929R:G 0 1 B930R:G 0 2 B931R:A 0 3 B939R:U 0 4 B940R:C 0 5 B941R:C 0 [Edges] 0 {B929R:G -> B930R:G: adjacent_5p upward } 0 1 {B930R:G -> B929R:G: adjacent_3p downward } 0 2 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B930R:G -> B931R:A: adjacent_5p upward } 0 5 {B931R:A -> B930R:G: adjacent_3p downward } 0 6 {B930R:G -> B940R:C: pairing antiparallel cis 127 Ww/Ws } 0 7 {B940R:C -> B930R:G: pairing antiparallel cis 127 Ws/Ww } 0 8 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B939R:U -> B940R:C: adjacent_5p upward } 0 11 {B940R:C -> B939R:U: adjacent_3p downward } 0 12 {B940R:C -> B941R:C: adjacent_5p } 0 13 {B941R:C -> B940R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B931R:A 0 1 B932R:U 0 2 B933R:U 0 3 B937R:A 0 4 B938R:U 0 5 B939R:U 0 [Edges] 0 {B931R:A -> B932R:U: adjacent_5p upward } 0 1 {B932R:U -> B931R:A: adjacent_3p downward } 0 2 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B932R:U -> B933R:U: adjacent_5p upward } 0 5 {B933R:U -> B932R:U: adjacent_3p downward } 0 6 {B933R:U -> B937R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 7 {B937R:A -> B933R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 8 {B937R:A -> B938R:U: adjacent_5p upward } 0 9 {B938R:U -> B937R:A: adjacent_3p downward } 0 10 {B938R:U -> B939R:U: adjacent_5p upward } 0 11 {B939R:U -> B938R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 B949R:C 0 1 B950R:G 0 2 B951R:A 0 3 B963R:U 0 4 B964R:C 0 5 B965R:G 0 [Edges] 0 {B949R:C -> B950R:G: adjacent_5p } 0 1 {B950R:G -> B949R:C: adjacent_3p } 0 2 {B949R:C -> B965R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B965R:G -> B949R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B950R:G -> B951R:A: adjacent_5p upward } 0 5 {B951R:A -> B950R:G: adjacent_3p downward } 0 6 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B950R:G -> B965R:G: outward } 0 9 {B965R:G -> B950R:G: outward } 0 10 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B963R:U -> B964R:C: adjacent_5p upward } 0 13 {B964R:C -> B963R:U: adjacent_3p downward } 0 14 {B964R:C -> B965R:G: adjacent_5p upward } 0 15 {B965R:G -> B964R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B950R:G 0 1 B951R:A 0 2 B952R:G 0 3 B962R:C 0 4 B963R:U 0 5 B964R:C 0 [Edges] 0 {B950R:G -> B951R:A: adjacent_5p upward } 0 1 {B951R:A -> B950R:G: adjacent_3p downward } 0 2 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B951R:A -> B952R:G: adjacent_5p upward } 0 5 {B952R:G -> B951R:A: adjacent_3p downward } 0 6 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B962R:C -> B963R:U: adjacent_5p } 0 11 {B963R:U -> B962R:C: adjacent_3p } 0 12 {B963R:U -> B964R:C: adjacent_5p upward } 0 13 {B964R:C -> B963R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B951R:A 0 1 B952R:G 0 2 B953R:G 0 3 B961R:C 0 4 B962R:C 0 5 B963R:U 0 [Edges] 0 {B951R:A -> B952R:G: adjacent_5p upward } 0 1 {B952R:G -> B951R:A: adjacent_3p downward } 0 2 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B952R:G -> B953R:G: adjacent_5p upward } 0 5 {B953R:G -> B952R:G: adjacent_3p downward } 0 6 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B953R:G -> B961R:C: pairing antiparallel cis Ww/Ww } 0 9 {B961R:C -> B953R:G: pairing antiparallel cis Ww/Ww } 0 10 {B961R:C -> B962R:C: adjacent_5p } 0 11 {B962R:C -> B961R:C: adjacent_3p } 0 12 {B962R:C -> B963R:U: adjacent_5p } 0 13 {B963R:U -> B962R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B903R:G 0 1 B904R:G 0 2 B905R:G 0 3 B968R:C 0 4 B969R:C 0 5 B970R:C 0 [Edges] 0 {B903R:G -> B904R:G: adjacent_5p upward } 0 1 {B904R:G -> B903R:G: adjacent_3p downward } 0 2 {B903R:G -> B970R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B970R:C -> B903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B904R:G -> B905R:G: adjacent_5p upward } 0 5 {B905R:G -> B904R:G: adjacent_3p downward } 0 6 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B968R:C -> B969R:C: adjacent_5p upward } 0 11 {B969R:C -> B968R:C: adjacent_3p downward } 0 12 {B969R:C -> B970R:C: adjacent_5p } 0 13 {B970R:C -> B969R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B904R:G 0 1 B905R:G 0 2 B906R:U 0 3 B967R:A 0 4 B968R:C 0 5 B969R:C 0 [Edges] 0 {B904R:G -> B905R:G: adjacent_5p upward } 0 1 {B905R:G -> B904R:G: adjacent_3p downward } 0 2 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B905R:G -> B906R:U: adjacent_5p upward } 0 5 {B906R:U -> B905R:G: adjacent_3p downward } 0 6 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {B967R:A -> B968R:C: adjacent_5p upward } 0 11 {B968R:C -> B967R:A: adjacent_3p downward } 0 12 {B968R:C -> B969R:C: adjacent_5p upward } 0 13 {B969R:C -> B968R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B905R:G 0 1 B906R:U 0 2 B907R:A 0 3 B966R:U 0 4 B967R:A 0 5 B968R:C 0 [Edges] 0 {B905R:G -> B906R:U: adjacent_5p upward } 0 1 {B906R:U -> B905R:G: adjacent_3p downward } 0 2 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B906R:U -> B907R:A: adjacent_5p upward } 0 5 {B907R:A -> B906R:U: adjacent_3p downward } 0 6 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B907R:A -> B966R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B966R:U -> B907R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B907R:A -> B967R:A: outward } 0 11 {B967R:A -> B907R:A: outward } 0 12 {B966R:U -> B967R:A: adjacent_5p } 0 13 {B967R:A -> B966R:U: adjacent_3p } 0 14 {B967R:A -> B968R:C: adjacent_5p upward } 0 15 {B968R:C -> B967R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B910R:G 0 1 B911R:C 0 2 B912R:C 0 3 B923R:G 0 4 B924R:G 0 5 B925R:C 0 [Edges] 0 {B910R:G -> B911R:C: adjacent_5p upward } 0 1 {B911R:C -> B910R:G: adjacent_3p downward } 0 2 {B910R:G -> B925R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B925R:C -> B910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B911R:C -> B912R:C: adjacent_5p upward } 0 5 {B912R:C -> B911R:C: adjacent_3p downward } 0 6 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B923R:G -> B924R:G: adjacent_5p upward } 0 11 {B924R:G -> B923R:G: adjacent_3p downward } 0 12 {B924R:G -> B925R:C: adjacent_5p upward } 0 13 {B925R:C -> B924R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B911R:C 0 1 B912R:C 0 2 B913R:A 0 3 B922R:A 0 4 B923R:G 0 5 B924R:G 0 [Edges] 0 {B911R:C -> B912R:C: adjacent_5p upward } 0 1 {B912R:C -> B911R:C: adjacent_3p downward } 0 2 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B912R:C -> B913R:A: adjacent_5p upward } 0 5 {B913R:A -> B912R:C: adjacent_3p downward } 0 6 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 9 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 10 {B922R:A -> B923R:G: adjacent_5p upward } 0 11 {B923R:G -> B922R:A: adjacent_3p downward } 0 12 {B923R:G -> B924R:G: adjacent_5p upward } 0 13 {B924R:G -> B923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B912R:C 0 1 B913R:A 0 2 B914R:A 0 3 B921R:A 0 4 B922R:A 0 5 B923R:G 0 [Edges] 0 {B912R:C -> B913R:A: adjacent_5p upward } 0 1 {B913R:A -> B912R:C: adjacent_3p downward } 0 2 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B913R:A -> B914R:A: adjacent_5p } 0 5 {B914R:A -> B913R:A: adjacent_3p } 0 6 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 7 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 8 {B914R:A -> B921R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 9 {B921R:A -> B914R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 10 {B914R:A -> B922R:A: outward } 0 11 {B922R:A -> B914R:A: outward } 0 12 {B921R:A -> B922R:A: adjacent_5p } 0 13 {B922R:A -> B921R:A: adjacent_3p } 0 14 {B922R:A -> B923R:G: adjacent_5p upward } 0 15 {B923R:G -> B922R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B926R:A 0 1 B927R:C 0 2 B928R:C 0 3 B942R:G 0 4 B943R:G 0 5 B944R:A 0 [Edges] 0 {B926R:A -> B927R:C: adjacent_5p upward } 0 1 {B927R:C -> B926R:A: adjacent_3p downward } 0 2 {B926R:A -> B944R:A: pairing antiparallel cis 37 Ww/Ww } 0 3 {B944R:A -> B926R:A: pairing antiparallel cis 37 Ww/Ww } 0 4 {B927R:C -> B928R:C: adjacent_5p upward } 0 5 {B928R:C -> B927R:C: adjacent_3p downward } 0 6 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B928R:C -> B943R:G: outward } 0 11 {B943R:G -> B928R:C: outward } 0 12 {B942R:G -> B943R:G: adjacent_5p upward } 0 13 {B943R:G -> B942R:G: adjacent_3p downward } 0 14 {B943R:G -> B944R:A: adjacent_5p upward } 0 15 {B944R:A -> B943R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 B927R:C 0 1 B928R:C 0 2 B929R:G 0 3 B941R:C 0 4 B942R:G 0 5 B943R:G 0 [Edges] 0 {B927R:C -> B928R:C: adjacent_5p upward } 0 1 {B928R:C -> B927R:C: adjacent_3p downward } 0 2 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B928R:C -> B929R:G: adjacent_5p upward } 0 5 {B929R:G -> B928R:C: adjacent_3p downward } 0 6 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B928R:C -> B943R:G: outward } 0 9 {B943R:G -> B928R:C: outward } 0 10 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B929R:G -> B942R:G: outward } 0 13 {B942R:G -> B929R:G: outward } 0 14 {B941R:C -> B942R:G: adjacent_5p } 0 15 {B942R:G -> B941R:C: adjacent_3p } 0 16 {B942R:G -> B943R:G: adjacent_5p upward } 0 17 {B943R:G -> B942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 12 . 3 . . 11 . 14 . 4 . 7 13 15 . 16 5 3 9 . . 17 . [GraphModel] [Vertices] 0 B928R:C 0 1 B929R:G 0 2 B930R:G 0 3 B940R:C 0 4 B941R:C 0 5 B942R:G 0 [Edges] 0 {B928R:C -> B929R:G: adjacent_5p upward } 0 1 {B929R:G -> B928R:C: adjacent_3p downward } 0 2 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B929R:G -> B930R:G: adjacent_5p upward } 0 5 {B930R:G -> B929R:G: adjacent_3p downward } 0 6 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B942R:G: outward } 0 9 {B942R:G -> B929R:G: outward } 0 10 {B930R:G -> B940R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 11 {B940R:C -> B930R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 12 {B940R:C -> B941R:C: adjacent_5p } 0 13 {B941R:C -> B940R:C: adjacent_3p } 0 14 {B941R:C -> B942R:G: adjacent_5p } 0 15 {B942R:G -> B941R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 8 2 . 5 . 10 . . 3 . . 11 . 12 . 4 . 7 . 13 . 14 5 3 9 . . 15 . [GraphModel] [Vertices] 0 B929R:G 0 1 B930R:G 0 2 B931R:A 0 3 B939R:U 0 4 B940R:C 0 5 B941R:C 0 [Edges] 0 {B929R:G -> B930R:G: adjacent_5p upward } 0 1 {B930R:G -> B929R:G: adjacent_3p downward } 0 2 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B930R:G -> B931R:A: adjacent_5p upward } 0 5 {B931R:A -> B930R:G: adjacent_3p downward } 0 6 {B930R:G -> B940R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 7 {B940R:C -> B930R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 8 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B939R:U -> B940R:C: adjacent_5p } 0 11 {B940R:C -> B939R:U: adjacent_3p } 0 12 {B940R:C -> B941R:C: adjacent_5p } 0 13 {B941R:C -> B940R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 B931R:A 0 1 B932R:U 0 2 B933R:U 0 3 B937R:A 0 4 B938R:U 0 5 B939R:U 0 [Edges] 0 {B931R:A -> B932R:U: adjacent_5p upward } 0 1 {B932R:U -> B931R:A: adjacent_3p downward } 0 2 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B932R:U -> B933R:U: adjacent_5p } 0 5 {B933R:U -> B932R:U: adjacent_3p } 0 6 {B933R:U -> B937R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 7 {B937R:A -> B933R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 8 {B937R:A -> B938R:U: adjacent_5p upward } 0 9 {B938R:U -> B937R:A: adjacent_3p downward } 0 10 {B938R:U -> B939R:U: adjacent_5p upward } 0 11 {B939R:U -> B938R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 B949R:C 0 1 B950R:G 0 2 B951R:A 0 3 B963R:U 0 4 B964R:C 0 5 B965R:G 0 [Edges] 0 {B949R:C -> B950R:G: adjacent_5p } 0 1 {B950R:G -> B949R:C: adjacent_3p } 0 2 {B949R:C -> B965R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B965R:G -> B949R:C: pairing antiparal