MOLECULE: [GraphModel] [Vertices] 0 B622R:G 0 1 B623R:A 0 2 B609R:A 0 3 B610R:G 0 4 B611R:U 0 5 B612R:U 0 6 B613R:C 0 [Edges] 0 {B609R:A -> B610R:G: adjacent_5p } 0 1 {B610R:G -> B609R:A: adjacent_3p } 0 2 {B609R:A -> B623R:A: pairing parallel trans II Hh/Hh } 0 3 {B623R:A -> B609R:A: pairing parallel trans II Hh/Hh } 0 4 {B610R:G -> B611R:U: adjacent_5p upward } 0 5 {B611R:U -> B610R:G: adjacent_3p downward } 0 6 {B611R:U -> B612R:U: adjacent_5p upward } 0 7 {B612R:U -> B611R:U: adjacent_3p downward } 0 8 {B612R:U -> B613R:C: adjacent_5p upward } 0 9 {B613R:C -> B612R:U: adjacent_3p downward } 0 10 {B612R:U -> B623R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B623R:A -> B612R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B613R:C -> B622R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B622R:G -> B613R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B622R:G -> B623R:A: adjacent_5p upward } 0 15 {B623R:A -> B622R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B160R:U 0 1 B161R:G 0 2 B141R:C 0 3 B142R:A 0 4 B143R:A 0 5 B144R:C 0 6 B145R:A 0 [Edges] 0 {B141R:C -> B142R:A: adjacent_5p } 0 1 {B142R:A -> B141R:C: adjacent_3p } 0 2 {B141R:C -> B161R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 3 {B161R:G -> B141R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 4 {B142R:A -> B143R:A: adjacent_5p upward } 0 5 {B143R:A -> B142R:A: adjacent_3p downward } 0 6 {B143R:A -> B144R:C: adjacent_5p upward } 0 7 {B144R:C -> B143R:A: adjacent_3p downward } 0 8 {B144R:C -> B145R:A: adjacent_5p upward } 0 9 {B145R:A -> B144R:C: adjacent_3p downward } 0 10 {B144R:C -> B161R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B161R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B145R:A -> B160R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B160R:U -> B145R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B145R:A -> B161R:G: outward } 0 15 {B161R:G -> B145R:A: outward } 0 16 {B160R:U -> B161R:G: adjacent_5p upward } 0 17 {B161R:G -> B160R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 13 1 17 . 3 . . 11 15 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 14 . . . 9 . [GraphModel] [Vertices] 0 B161R:G 0 1 B162R:G 0 2 B140R:G 0 3 B141R:C 0 4 B142R:A 0 5 B143R:A 0 6 B144R:C 0 [Edges] 0 {B140R:G -> B141R:C: adjacent_5p upward } 0 1 {B141R:C -> B140R:G: adjacent_3p downward } 0 2 {B140R:G -> B142R:A: pairing parallel cis one_hbond Ss/Hw } 0 3 {B142R:A -> B140R:G: pairing parallel cis one_hbond Hw/Ss } 0 4 {B140R:G -> B162R:G: pairing antiparallel trans one_hbond Ws/Hw } 0 5 {B162R:G -> B140R:G: pairing antiparallel trans one_hbond Hw/Ws } 0 6 {B141R:C -> B142R:A: adjacent_5p } 0 7 {B142R:A -> B141R:C: adjacent_3p } 0 8 {B141R:C -> B161R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 9 {B161R:G -> B141R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 10 {B142R:A -> B143R:A: adjacent_5p upward } 0 11 {B143R:A -> B142R:A: adjacent_3p downward } 0 12 {B143R:A -> B144R:C: adjacent_5p upward } 0 13 {B144R:C -> B143R:A: adjacent_3p downward } 0 14 {B143R:A -> B162R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {B162R:G -> B143R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {B144R:C -> B161R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {B161R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {B161R:G -> B162R:G: adjacent_5p upward } 0 19 {B162R:G -> B161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . 9 . . 17 1 19 . 5 . . 15 . 2 . 4 . 0 2 . . 3 8 . 1 . 6 . . 4 . . 3 7 . 10 . 5 . 14 . . 11 . 12 6 16 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A14R:A 0 1 A15R:U 0 2 A27R:U 0 3 A28R:G 0 4 A29R:C 0 5 A30R:G 0 6 A31R:A 0 [Edges] 0 {A14R:A -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:A: adjacent_3p } 0 2 {A14R:A -> A31R:A: pairing parallel trans I Ww/Ww } 0 3 {A31R:A -> A14R:A: pairing parallel trans I Ww/Ww } 0 4 {A15R:U -> A27R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {A27R:U -> A15R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A27R:U -> A28R:G: adjacent_5p } 0 9 {A28R:G -> A27R:U: adjacent_3p } 0 10 {A28R:G -> A29R:C: adjacent_5p upward } 0 11 {A29R:C -> A28R:G: adjacent_3p downward } 0 12 {A29R:C -> A30R:G: adjacent_5p inward } 0 13 {A30R:G -> A29R:C: adjacent_3p inward } 0 14 {A30R:G -> A31R:A: adjacent_5p } 0 15 {A31R:A -> A30R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:U 0 2 A15R:U 0 3 A16R:A 0 4 A17R:A 0 5 A18R:C 0 6 A19R:C 0 [Edges] 0 {A15R:U -> A16R:A: adjacent_5p } 0 1 {A16R:A -> A15R:U: adjacent_3p } 0 2 {A15R:U -> A27R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {A27R:U -> A15R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {A16R:A -> A17R:A: adjacent_5p upward } 0 5 {A17R:A -> A16R:A: adjacent_3p downward } 0 6 {A17R:A -> A18R:C: adjacent_5p upward } 0 7 {A18R:C -> A17R:A: adjacent_3p downward } 0 8 {A18R:C -> A19R:C: adjacent_5p upward } 0 9 {A19R:C -> A18R:C: adjacent_3p downward } 0 10 {A19R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A26R:G -> A27R:U: adjacent_5p } 0 13 {A27R:U -> A26R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 A29R:C 0 1 A30R:G 0 2 A11R:C 0 3 A12R:G 0 4 A13R:C 0 5 A14R:A 0 6 A15R:U 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> A15R:U: outward } 0 3 {A15R:U -> A11R:C: outward } 0 4 {A11R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A30R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A12R:G -> A13R:C: adjacent_5p upward } 0 7 {A13R:C -> A12R:G: adjacent_3p downward } 0 8 {A13R:C -> A14R:A: adjacent_5p inward } 0 9 {A14R:A -> A13R:C: adjacent_3p inward } 0 10 {A14R:A -> A15R:U: adjacent_5p } 0 11 {A15R:U -> A14R:A: adjacent_3p } 0 12 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A29R:C -> A30R:G: adjacent_5p inward } 0 15 {A30R:G -> A29R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 C214R:A 0 1 C215R:U 0 2 C227R:U 0 3 C228R:G 0 4 C229R:C 0 5 C230R:G 0 6 C231R:A 0 [Edges] 0 {C214R:A -> C215R:U: adjacent_5p } 0 1 {C215R:U -> C214R:A: adjacent_3p } 0 2 {C214R:A -> C231R:A: pairing parallel trans I Ww/Ww } 0 3 {C231R:A -> C214R:A: pairing parallel trans I Ww/Ww } 0 4 {C215R:U -> C227R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {C227R:U -> C215R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C227R:U -> C228R:G: adjacent_5p } 0 9 {C228R:G -> C227R:U: adjacent_3p } 0 10 {C228R:G -> C229R:C: adjacent_5p upward } 0 11 {C229R:C -> C228R:G: adjacent_3p downward } 0 12 {C229R:C -> C230R:G: adjacent_5p inward } 0 13 {C230R:G -> C229R:C: adjacent_3p inward } 0 14 {C230R:G -> C231R:A: adjacent_5p } 0 15 {C231R:A -> C230R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 C226R:G 0 1 C227R:U 0 2 C215R:U 0 3 C216R:A 0 4 C217R:A 0 5 C218R:C 0 6 C219R:C 0 [Edges] 0 {C215R:U -> C216R:A: adjacent_5p } 0 1 {C216R:A -> C215R:U: adjacent_3p } 0 2 {C215R:U -> C227R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {C227R:U -> C215R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {C216R:A -> C217R:A: adjacent_5p upward } 0 5 {C217R:A -> C216R:A: adjacent_3p downward } 0 6 {C217R:A -> C218R:C: adjacent_5p upward } 0 7 {C218R:C -> C217R:A: adjacent_3p downward } 0 8 {C218R:C -> C219R:C: adjacent_5p upward } 0 9 {C219R:C -> C218R:C: adjacent_3p downward } 0 10 {C219R:C -> C226R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C226R:G -> C219R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C226R:G -> C227R:U: adjacent_5p } 0 13 {C227R:U -> C226R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 C229R:C 0 1 C230R:G 0 2 C211R:C 0 3 C212R:G 0 4 C213R:C 0 5 C214R:A 0 6 C215R:U 0 [Edges] 0 {C211R:C -> C212R:G: adjacent_5p } 0 1 {C212R:G -> C211R:C: adjacent_3p } 0 2 {C211R:C -> C215R:U: outward } 0 3 {C215R:U -> C211R:C: outward } 0 4 {C211R:C -> C230R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {C230R:G -> C211R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {C212R:G -> C213R:C: adjacent_5p upward } 0 7 {C213R:C -> C212R:G: adjacent_3p downward } 0 8 {C213R:C -> C214R:A: adjacent_5p inward } 0 9 {C214R:A -> C213R:C: adjacent_3p inward } 0 10 {C214R:A -> C215R:U: adjacent_5p } 0 11 {C215R:U -> C214R:A: adjacent_3p } 0 12 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {C229R:C -> C230R:G: adjacent_5p inward } 0 15 {C230R:G -> C229R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 E414R:A 0 1 E415R:U 0 2 E427R:U 0 3 E428R:G 0 4 E429R:C 0 5 E430R:G 0 6 E431R:A 0 [Edges] 0 {E414R:A -> E415R:U: adjacent_5p } 0 1 {E415R:U -> E414R:A: adjacent_3p } 0 2 {E414R:A -> E431R:A: pairing parallel trans I Ww/Ww } 0 3 {E431R:A -> E414R:A: pairing parallel trans I Ww/Ww } 0 4 {E415R:U -> E427R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {E427R:U -> E415R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {E427R:U -> E428R:G: adjacent_5p } 0 9 {E428R:G -> E427R:U: adjacent_3p } 0 10 {E428R:G -> E429R:C: adjacent_5p upward } 0 11 {E429R:C -> E428R:G: adjacent_3p downward } 0 12 {E429R:C -> E430R:G: adjacent_5p inward } 0 13 {E430R:G -> E429R:C: adjacent_3p inward } 0 14 {E430R:G -> E431R:A: adjacent_5p } 0 15 {E431R:A -> E430R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E426R:G 0 1 E427R:U 0 2 E415R:U 0 3 E416R:A 0 4 E417R:A 0 5 E418R:C 0 6 E419R:C 0 [Edges] 0 {E415R:U -> E416R:A: adjacent_5p } 0 1 {E416R:A -> E415R:U: adjacent_3p } 0 2 {E415R:U -> E427R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {E427R:U -> E415R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {E416R:A -> E417R:A: adjacent_5p upward } 0 5 {E417R:A -> E416R:A: adjacent_3p downward } 0 6 {E417R:A -> E418R:C: adjacent_5p upward } 0 7 {E418R:C -> E417R:A: adjacent_3p downward } 0 8 {E418R:C -> E419R:C: adjacent_5p upward } 0 9 {E419R:C -> E418R:C: adjacent_3p downward } 0 10 {E419R:C -> E426R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E426R:G -> E419R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E426R:G -> E427R:U: adjacent_5p } 0 13 {E427R:U -> E426R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 E429R:C 0 1 E430R:G 0 2 E411R:C 0 3 E412R:G 0 4 E413R:C 0 5 E414R:A 0 6 E415R:U 0 [Edges] 0 {E411R:C -> E412R:G: adjacent_5p } 0 1 {E412R:G -> E411R:C: adjacent_3p } 0 2 {E411R:C -> E415R:U: outward } 0 3 {E415R:U -> E411R:C: outward } 0 4 {E411R:C -> E430R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {E430R:G -> E411R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {E412R:G -> E413R:C: adjacent_5p upward } 0 7 {E413R:C -> E412R:G: adjacent_3p downward } 0 8 {E413R:C -> E414R:A: adjacent_5p inward } 0 9 {E414R:A -> E413R:C: adjacent_3p inward } 0 10 {E414R:A -> E415R:U: adjacent_5p } 0 11 {E415R:U -> E414R:A: adjacent_3p } 0 12 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {E429R:C -> E430R:G: adjacent_5p inward } 0 15 {E430R:G -> E429R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 G614R:A 0 1 G615R:U 0 2 G627R:U 0 3 G628R:G 0 4 G629R:C 0 5 G630R:G 0 6 G631R:A 0 [Edges] 0 {G614R:A -> G615R:U: adjacent_5p } 0 1 {G615R:U -> G614R:A: adjacent_3p } 0 2 {G614R:A -> G631R:A: pairing parallel trans one_hbond Ww/Ww } 0 3 {G631R:A -> G614R:A: pairing parallel trans one_hbond Ww/Ww } 0 4 {G615R:U -> G627R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {G627R:U -> G615R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {G627R:U -> G628R:G: adjacent_5p } 0 9 {G628R:G -> G627R:U: adjacent_3p } 0 10 {G627R:U -> G629R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 11 {G629R:C -> G627R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 12 {G628R:G -> G629R:C: adjacent_5p upward } 0 13 {G629R:C -> G628R:G: adjacent_3p downward } 0 14 {G629R:C -> G630R:G: adjacent_5p inward } 0 15 {G630R:G -> G629R:C: adjacent_3p inward } 0 16 {G630R:G -> G631R:A: adjacent_5p } 0 17 {G631R:A -> G630R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 G626R:G 0 1 G627R:U 0 2 G615R:U 0 3 G616R:A 0 4 G617R:A 0 5 G618R:C 0 6 G619R:C 0 [Edges] 0 {G615R:U -> G616R:A: adjacent_5p } 0 1 {G616R:A -> G615R:U: adjacent_3p } 0 2 {G615R:U -> G627R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {G627R:U -> G615R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {G616R:A -> G617R:A: adjacent_5p upward } 0 5 {G617R:A -> G616R:A: adjacent_3p downward } 0 6 {G617R:A -> G618R:C: adjacent_5p upward } 0 7 {G618R:C -> G617R:A: adjacent_3p downward } 0 8 {G618R:C -> G619R:C: adjacent_5p upward } 0 9 {G619R:C -> G618R:C: adjacent_3p downward } 0 10 {G619R:C -> G626R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {G626R:G -> G619R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {G626R:G -> G627R:U: adjacent_5p } 0 13 {G627R:U -> G626R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 G629R:C 0 1 G630R:G 0 2 G611R:C 0 3 G612R:G 0 4 G613R:C 0 5 G614R:A 0 6 G615R:U 0 [Edges] 0 {G611R:C -> G612R:G: adjacent_5p } 0 1 {G612R:G -> G611R:C: adjacent_3p } 0 2 {G611R:C -> G615R:U: outward } 0 3 {G615R:U -> G611R:C: outward } 0 4 {G611R:C -> G630R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {G630R:G -> G611R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {G612R:G -> G613R:C: adjacent_5p upward } 0 7 {G613R:C -> G612R:G: adjacent_3p downward } 0 8 {G613R:C -> G614R:A: adjacent_5p inward } 0 9 {G614R:A -> G613R:C: adjacent_3p inward } 0 10 {G614R:A -> G615R:U: adjacent_5p } 0 11 {G615R:U -> G614R:A: adjacent_3p } 0 12 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {G629R:C -> G630R:G: adjacent_5p inward } 0 15 {G630R:G -> G629R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C44R:A 0 1 C45R:G 0 2 C28R:C 0 3 C29R:A 0 4 C30R:A 0 5 C31R:U 0 6 C32R:G 0 [Edges] 0 {C28R:C -> C29R:A: adjacent_5p upward } 0 1 {C29R:A -> C28R:C: adjacent_3p downward } 0 2 {C28R:C -> C45R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C45R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:A -> C30R:A: adjacent_5p } 0 5 {C30R:A -> C29R:A: adjacent_3p } 0 6 {C30R:A -> C31R:U: adjacent_5p } 0 7 {C31R:U -> C30R:A: adjacent_3p } 0 8 {C30R:A -> C44R:A: inward } 0 9 {C44R:A -> C30R:A: inward } 0 10 {C31R:U -> C32R:G: adjacent_5p } 0 11 {C32R:G -> C31R:U: adjacent_3p } 0 12 {C32R:G -> C44R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {C44R:A -> C32R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C44R:A -> C45R:G: adjacent_5p } 0 15 {C45R:G -> C44R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . 9 . 13 1 15 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 8 . . 5 . 6 . 5 . . . . 7 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 D44R:A 0 1 D45R:G 0 2 D28R:C 0 3 D29R:A 0 4 D30R:A 0 5 D31R:U 0 6 D32R:G 0 [Edges] 0 {D28R:C -> D29R:A: adjacent_5p upward } 0 1 {D29R:A -> D28R:C: adjacent_3p downward } 0 2 {D28R:C -> D45R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D45R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D29R:A -> D30R:A: adjacent_5p } 0 5 {D30R:A -> D29R:A: adjacent_3p } 0 6 {D30R:A -> D31R:U: adjacent_5p } 0 7 {D31R:U -> D30R:A: adjacent_3p } 0 8 {D30R:A -> D44R:A: inward } 0 9 {D44R:A -> D30R:A: inward } 0 10 {D31R:U -> D32R:G: adjacent_5p } 0 11 {D32R:G -> D31R:U: adjacent_3p } 0 12 {D32R:G -> D44R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {D44R:A -> D32R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {D44R:A -> D45R:G: adjacent_5p } 0 15 {D45R:G -> D44R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . 9 . 13 1 15 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 8 . . 5 . 6 . 5 . . . . 7 . 10 6 12 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C22R:G 0 1 C23R:A 0 2 C9R:A 0 3 C10R:G 0 4 C11R:U 0 5 C12R:U 0 6 C13R:C 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C23R:A: pairing parallel trans II Hh/Hh } 0 3 {C23R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 4 {C10R:G -> C11R:U: adjacent_5p upward } 0 5 {C11R:U -> C10R:G: adjacent_3p downward } 0 6 {C11R:U -> C12R:U: adjacent_5p } 0 7 {C12R:U -> C11R:U: adjacent_3p } 0 8 {C12R:U -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:U: adjacent_3p downward } 0 10 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C13R:C -> C22R:G: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 13 {C22R:G -> C13R:C: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 14 {C22R:G -> C23R:A: adjacent_5p upward } 0 15 {C23R:A -> C22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 D22R:G 0 1 D23R:A 0 2 D9R:A 0 3 D10R:G 0 4 D11R:U 0 5 D12R:U 0 6 D13R:C 0 [Edges] 0 {D9R:A -> D10R:G: adjacent_5p } 0 1 {D10R:G -> D9R:A: adjacent_3p } 0 2 {D9R:A -> D23R:A: pairing parallel trans II Hh/Hh } 0 3 {D23R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 4 {D10R:G -> D11R:U: adjacent_5p upward } 0 5 {D11R:U -> D10R:G: adjacent_3p downward } 0 6 {D11R:U -> D12R:U: adjacent_5p upward } 0 7 {D12R:U -> D11R:U: adjacent_3p downward } 0 8 {D12R:U -> D13R:C: adjacent_5p upward } 0 9 {D13R:C -> D12R:U: adjacent_3p downward } 0 10 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D22R:G -> D23R:A: adjacent_5p upward } 0 15 {D23R:A -> D22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A214R:A 0 1 A215R:U 0 2 A227R:U 0 3 A228R:G 0 4 A229R:C 0 5 A230R:G 0 6 A231R:A 0 [Edges] 0 {A214R:A -> A215R:U: adjacent_5p } 0 1 {A215R:U -> A214R:A: adjacent_3p } 0 2 {A214R:A -> A231R:A: pairing parallel trans I Ww/Ww } 0 3 {A231R:A -> A214R:A: pairing parallel trans I Ww/Ww } 0 4 {A215R:U -> A227R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {A227R:U -> A215R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A227R:U -> A228R:G: adjacent_5p } 0 9 {A228R:G -> A227R:U: adjacent_3p } 0 10 {A227R:U -> A229R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 11 {A229R:C -> A227R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 12 {A228R:G -> A229R:C: adjacent_5p upward } 0 13 {A229R:C -> A228R:G: adjacent_3p downward } 0 14 {A229R:C -> A230R:G: adjacent_5p inward } 0 15 {A230R:G -> A229R:C: adjacent_3p inward } 0 16 {A230R:G -> A231R:A: adjacent_5p } 0 17 {A231R:A -> A230R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 A226R:G 0 1 A227R:U 0 2 A215R:U 0 3 A216R:A 0 4 A217R:A 0 5 A218R:C 0 6 A219R:C 0 [Edges] 0 {A215R:U -> A216R:A: adjacent_5p } 0 1 {A216R:A -> A215R:U: adjacent_3p } 0 2 {A215R:U -> A227R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {A227R:U -> A215R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {A216R:A -> A217R:A: adjacent_5p upward } 0 5 {A217R:A -> A216R:A: adjacent_3p downward } 0 6 {A217R:A -> A218R:C: adjacent_5p upward } 0 7 {A218R:C -> A217R:A: adjacent_3p downward } 0 8 {A218R:C -> A219R:C: adjacent_5p upward } 0 9 {A219R:C -> A218R:C: adjacent_3p downward } 0 10 {A219R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A226R:G -> A219R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A226R:G -> A227R:U: adjacent_5p } 0 13 {A227R:U -> A226R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 A229R:C 0 1 A230R:G 0 2 A211R:C 0 3 A212R:G 0 4 A213R:C 0 5 A214R:A 0 6 A215R:U 0 [Edges] 0 {A211R:C -> A212R:G: adjacent_5p } 0 1 {A212R:G -> A211R:C: adjacent_3p } 0 2 {A211R:C -> A215R:U: outward } 0 3 {A215R:U -> A211R:C: outward } 0 4 {A211R:C -> A230R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A230R:G -> A211R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A212R:G -> A213R:C: adjacent_5p upward } 0 7 {A213R:C -> A212R:G: adjacent_3p downward } 0 8 {A213R:C -> A214R:A: adjacent_5p inward } 0 9 {A214R:A -> A213R:C: adjacent_3p inward } 0 10 {A214R:A -> A215R:U: adjacent_5p } 0 11 {A215R:U -> A214R:A: adjacent_3p } 0 12 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A229R:C -> A230R:G: adjacent_5p inward } 0 15 {A230R:G -> A229R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 B314R:A 0 1 B315R:U 0 2 B327R:U 0 3 B328R:G 0 4 B329R:C 0 5 B330R:G 0 6 B331R:A 0 [Edges] 0 {B314R:A -> B315R:U: adjacent_5p } 0 1 {B315R:U -> B314R:A: adjacent_3p } 0 2 {B314R:A -> B331R:A: pairing parallel trans I Ww/Ww } 0 3 {B331R:A -> B314R:A: pairing parallel trans I Ww/Ww } 0 4 {B315R:U -> B327R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {B327R:U -> B315R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {B327R:U -> B328R:G: adjacent_5p } 0 9 {B328R:G -> B327R:U: adjacent_3p } 0 10 {B327R:U -> B329R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 11 {B329R:C -> B327R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 12 {B328R:G -> B329R:C: adjacent_5p upward } 0 13 {B329R:C -> B328R:G: adjacent_3p downward } 0 14 {B329R:C -> B330R:G: adjacent_5p inward } 0 15 {B330R:G -> B329R:C: adjacent_3p inward } 0 16 {B330R:G -> B331R:A: adjacent_5p } 0 17 {B331R:A -> B330R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 B326R:G 0 1 B327R:U 0 2 B315R:U 0 3 B316R:A 0 4 B317R:A 0 5 B318R:C 0 6 B319R:C 0 [Edges] 0 {B315R:U -> B316R:A: adjacent_5p } 0 1 {B316R:A -> B315R:U: adjacent_3p } 0 2 {B315R:U -> B327R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {B327R:U -> B315R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {B316R:A -> B317R:A: adjacent_5p upward } 0 5 {B317R:A -> B316R:A: adjacent_3p downward } 0 6 {B317R:A -> B318R:C: adjacent_5p upward } 0 7 {B318R:C -> B317R:A: adjacent_3p downward } 0 8 {B318R:C -> B319R:C: adjacent_5p upward } 0 9 {B319R:C -> B318R:C: adjacent_3p downward } 0 10 {B319R:C -> B326R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B326R:G -> B319R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B326R:G -> B327R:U: adjacent_5p } 0 13 {B327R:U -> B326R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 B329R:C 0 1 B330R:G 0 2 B311R:C 0 3 B312R:G 0 4 B313R:C 0 5 B314R:A 0 6 B315R:U 0 [Edges] 0 {B311R:C -> B312R:G: adjacent_5p } 0 1 {B312R:G -> B311R:C: adjacent_3p } 0 2 {B311R:C -> B315R:U: outward } 0 3 {B315R:U -> B311R:C: outward } 0 4 {B311R:C -> B330R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B330R:G -> B311R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B312R:G -> B313R:C: adjacent_5p upward } 0 7 {B313R:C -> B312R:G: adjacent_3p downward } 0 8 {B313R:C -> B314R:A: adjacent_5p inward } 0 9 {B314R:A -> B313R:C: adjacent_3p inward } 0 10 {B314R:A -> B315R:U: adjacent_5p } 0 11 {B315R:U -> B314R:A: adjacent_3p } 0 12 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {B329R:C -> B330R:G: adjacent_5p inward } 0 15 {B330R:G -> B329R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 C414R:A 0 1 C415R:U 0 2 C427R:U 0 3 C428R:G 0 4 C429R:C 0 5 C430R:G 0 6 C431R:A 0 [Edges] 0 {C414R:A -> C415R:U: adjacent_5p } 0 1 {C415R:U -> C414R:A: adjacent_3p } 0 2 {C414R:A -> C431R:A: pairing parallel trans I Ww/Ww } 0 3 {C431R:A -> C414R:A: pairing parallel trans I Ww/Ww } 0 4 {C415R:U -> C427R:U: pairing antiparallel trans one_hbond Hh/Wh } 0 5 {C427R:U -> C415R:U: pairing antiparallel trans one_hbond Wh/Hh } 0 6 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C427R:U -> C428R:G: adjacent_5p } 0 9 {C428R:G -> C427R:U: adjacent_3p } 0 10 {C427R:U -> C429R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 11 {C429R:C -> C427R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 12 {C428R:G -> C429R:C: adjacent_5p upward } 0 13 {C429R:C -> C428R:G: adjacent_3p downward } 0 14 {C429R:C -> C430R:G: adjacent_5p inward } 0 15 {C430R:G -> C429R:C: adjacent_3p inward } 0 16 {C430R:G -> C431R:A: adjacent_5p } 0 17 {C431R:A -> C430R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 10 . . 3 . . 9 . 12 . . 4 . 7 11 13 . 14 . 5 . . . . 15 . 16 6 3 . . . . 17 . [GraphModel] [Vertices] 0 C426R:G 0 1 C427R:U 0 2 C415R:U 0 3 C416R:A 0 4 C417R:A 0 5 C418R:C 0 6 C419R:C 0 [Edges] 0 {C415R:U -> C416R:A: adjacent_5p } 0 1 {C416R:A -> C415R:U: adjacent_3p } 0 2 {C415R:U -> C427R:U: pairing antiparallel trans one_hbond Hh/Wh } 0 3 {C427R:U -> C415R:U: pairing antiparallel trans one_hbond Wh/Hh } 0 4 {C416R:A -> C417R:A: adjacent_5p upward } 0 5 {C417R:A -> C416R:A: adjacent_3p downward } 0 6 {C417R:A -> C418R:C: adjacent_5p upward } 0 7 {C418R:C -> C417R:A: adjacent_3p downward } 0 8 {C418R:C -> C419R:C: adjacent_5p upward } 0 9 {C419R:C -> C418R:C: adjacent_3p downward } 0 10 {C419R:C -> C426R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C426R:G -> C419R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C426R:G -> C427R:U: adjacent_5p } 0 13 {C427R:U -> C426R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 C429R:C 0 1 C430R:G 0 2 C411R:C 0 3 C412R:G 0 4 C413R:C 0 5 C414R:A 0 6 C415R:U 0 [Edges] 0 {C411R:C -> C412R:G: adjacent_5p } 0 1 {C412R:G -> C411R:C: adjacent_3p } 0 2 {C411R:C -> C415R:U: outward } 0 3 {C415R:U -> C411R:C: outward } 0 4 {C411R:C -> C430R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {C430R:G -> C411R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {C412R:G -> C413R:C: adjacent_5p upward } 0 7 {C413R:C -> C412R:G: adjacent_3p downward } 0 8 {C413R:C -> C414R:A: adjacent_5p inward } 0 9 {C414R:A -> C413R:C: adjacent_3p inward } 0 10 {C414R:A -> C415R:U: adjacent_5p } 0 11 {C415R:U -> C414R:A: adjacent_3p } 0 12 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {C429R:C -> C430R:G: adjacent_5p inward } 0 15 {C430R:G -> C429R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 D514R:A 0 1 D515R:U 0 2 D527R:U 0 3 D528R:G 0 4 D529R:C 0 5 D530R:G 0 6 D531R:A 0 [Edges] 0 {D514R:A -> D515R:U: adjacent_5p } 0 1 {D515R:U -> D514R:A: adjacent_3p } 0 2 {D514R:A -> D531R:A: pairing parallel trans I Ww/Ww } 0 3 {D531R:A -> D514R:A: pairing parallel trans I Ww/Ww } 0 4 {D515R:U -> D527R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {D527R:U -> D515R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {D527R:U -> D528R:G: adjacent_5p } 0 9 {D528R:G -> D527R:U: adjacent_3p } 0 10 {D528R:G -> D529R:C: adjacent_5p upward } 0 11 {D529R:C -> D528R:G: adjacent_3p downward } 0 12 {D529R:C -> D530R:G: adjacent_5p inward } 0 13 {D530R:G -> D529R:C: adjacent_3p inward } 0 14 {D530R:G -> D531R:A: adjacent_5p } 0 15 {D531R:A -> D530R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 D526R:G 0 1 D527R:U 0 2 D515R:U 0 3 D516R:A 0 4 D517R:A 0 5 D518R:C 0 6 D519R:C 0 [Edges] 0 {D515R:U -> D516R:A: adjacent_5p } 0 1 {D516R:A -> D515R:U: adjacent_3p } 0 2 {D515R:U -> D527R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {D527R:U -> D515R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {D516R:A -> D517R:A: adjacent_5p upward } 0 5 {D517R:A -> D516R:A: adjacent_3p downward } 0 6 {D517R:A -> D518R:C: adjacent_5p upward } 0 7 {D518R:C -> D517R:A: adjacent_3p downward } 0 8 {D518R:C -> D519R:C: adjacent_5p upward } 0 9 {D519R:C -> D518R:C: adjacent_3p downward } 0 10 {D519R:C -> D526R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D526R:G -> D519R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D526R:G -> D527R:U: adjacent_5p } 0 13 {D527R:U -> D526R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 D529R:C 0 1 D530R:G 0 2 D511R:C 0 3 D512R:G 0 4 D513R:C 0 5 D514R:A 0 6 D515R:U 0 [Edges] 0 {D511R:C -> D512R:G: adjacent_5p } 0 1 {D512R:G -> D511R:C: adjacent_3p } 0 2 {D511R:C -> D515R:U: outward } 0 3 {D515R:U -> D511R:C: outward } 0 4 {D511R:C -> D530R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {D530R:G -> D511R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {D512R:G -> D513R:C: adjacent_5p upward } 0 7 {D513R:C -> D512R:G: adjacent_3p downward } 0 8 {D513R:C -> D514R:A: adjacent_5p inward } 0 9 {D514R:A -> D513R:C: adjacent_3p inward } 0 10 {D514R:A -> D515R:U: adjacent_5p } 0 11 {D515R:U -> D514R:A: adjacent_3p } 0 12 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {D529R:C -> D530R:G: adjacent_5p inward } 0 15 {D530R:G -> D529R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 E114R:A 0 1 E115R:U 0 2 E127R:U 0 3 E128R:G 0 4 E129R:C 0 5 E130R:G 0 6 E131R:A 0 [Edges] 0 {E114R:A -> E115R:U: adjacent_5p } 0 1 {E115R:U -> E114R:A: adjacent_3p } 0 2 {E114R:A -> E131R:A: pairing parallel trans I Ww/Ww } 0 3 {E131R:A -> E114R:A: pairing parallel trans I Ww/Ww } 0 4 {E115R:U -> E127R:U: pairing antiparallel trans 81 Hh/Ww } 0 5 {E127R:U -> E115R:U: pairing antiparallel trans 81 Ww/Hh } 0 6 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {E127R:U -> E128R:G: adjacent_5p } 0 9 {E128R:G -> E127R:U: adjacent_3p } 0 10 {E128R:G -> E129R:C: adjacent_5p upward } 0 11 {E129R:C -> E128R:G: adjacent_3p downward } 0 12 {E129R:C -> E130R:G: adjacent_5p inward } 0 13 {E130R:G -> E129R:C: adjacent_3p inward } 0 14 {E130R:G -> E131R:A: adjacent_5p } 0 15 {E131R:A -> E130R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 . . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . 7 . 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 E126R:G 0 1 E127R:U 0 2 E115R:U 0 3 E116R:A 0 4 E117R:A 0 5 E118R:C 0 6 E119R:C 0 [Edges] 0 {E115R:U -> E116R:A: adjacent_5p } 0 1 {E116R:A -> E115R:U: adjacent_3p } 0 2 {E115R:U -> E127R:U: pairing antiparallel trans 81 Hh/Ww } 0 3 {E127R:U -> E115R:U: pairing antiparallel trans 81 Ww/Hh } 0 4 {E116R:A -> E117R:A: adjacent_5p upward } 0 5 {E117R:A -> E116R:A: adjacent_3p downward } 0 6 {E117R:A -> E118R:C: adjacent_5p upward } 0 7 {E118R:C -> E117R:A: adjacent_3p downward } 0 8 {E118R:C -> E119R:C: adjacent_5p upward } 0 9 {E119R:C -> E118R:C: adjacent_3p downward } 0 10 {E119R:C -> E126R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E126R:G -> E119R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E126R:G -> E127R:U: adjacent_5p } 0 13 {E127R:U -> E126R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 E129R:C 0 1 E130R:G 0 2 E111R:C 0 3 E112R:G 0 4 E113R:C 0 5 E114R:A 0 6 E115R:U 0 [Edges] 0 {E111R:C -> E112R:G: adjacent_5p } 0 1 {E112R:G -> E111R:C: adjacent_3p } 0 2 {E111R:C -> E115R:U: outward } 0 3 {E115R:U -> E111R:C: outward } 0 4 {E111R:C -> E130R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {E130R:G -> E111R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {E112R:G -> E113R:C: adjacent_5p upward } 0 7 {E113R:C -> E112R:G: adjacent_3p downward } 0 8 {E113R:C -> E114R:A: adjacent_5p inward } 0 9 {E114R:A -> E113R:C: adjacent_3p inward } 0 10 {E114R:A -> E115R:U: adjacent_5p } 0 11 {E115R:U -> E114R:A: adjacent_3p } 0 12 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {E129R:C -> E130R:G: adjacent_5p inward } 0 15 {E130R:G -> E129R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 B920R:U 0 1 B921R:A 0 2 B914R:A 0 3 B915R:G 0 4 B916R:C 0 5 B918R:G 0 6 B919R:G 0 [Edges] 0 {B914R:A -> B915R:G: adjacent_5p upward } 0 1 {B915R:G -> B914R:A: adjacent_3p downward } 0 2 {B914R:A -> B921R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 3 {B921R:A -> B914R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 4 {B915R:G -> B916R:C: adjacent_5p } 0 5 {B916R:C -> B915R:G: adjacent_3p } 0 6 {B916R:C -> B918R:G: adjacent_5p } 0 7 {B918R:G -> B916R:C: adjacent_3p } 0 8 {B918R:G -> B919R:G: adjacent_5p } 0 9 {B919R:G -> B918R:G: adjacent_3p } 0 10 {B919R:G -> B920R:U: adjacent_5p pairing parallel cis 89 Ss/Hh } 0 11 {B920R:U -> B919R:G: adjacent_3p pairing parallel cis 89 Hh/Ss } 0 12 {B920R:U -> B921R:A: adjacent_5p } 0 13 {B921R:A -> B920R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A2270R:G 0 1 A2271R:G 0 2 A2119R:C 0 3 A2120R:U 0 4 A2121R:G 0 5 A2122R:C 0 6 A2123R:A 0 [Edges] 0 {A2119R:C -> A2120R:U: adjacent_5p upward } 0 1 {A2120R:U -> A2119R:C: adjacent_3p downward } 0 2 {A2119R:C -> A2271R:G: pairing parallel trans one_hbond 121 Hw/Hw } 0 3 {A2271R:G -> A2119R:C: pairing parallel trans one_hbond 121 Hw/Hw } 0 4 {A2120R:U -> A2121R:G: adjacent_5p upward } 0 5 {A2121R:G -> A2120R:U: adjacent_3p downward } 0 6 {A2121R:G -> A2122R:C: adjacent_5p upward } 0 7 {A2122R:C -> A2121R:G: adjacent_3p downward } 0 8 {A2122R:C -> A2123R:A: adjacent_5p } 0 9 {A2123R:A -> A2122R:C: adjacent_3p } 0 10 {A2123R:A -> A2270R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A2270R:G -> A2123R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A2270R:G -> A2271R:G: adjacent_5p } 0 13 {A2271R:G -> A2270R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A71R:G 0 1 A72R:U 0 2 A44R:C 0 3 A45R:U 0 4 A46R:G 0 5 A47R:G 0 6 A48R:G 0 [Edges] 0 {A44R:C -> A45R:U: adjacent_5p upward } 0 1 {A45R:U -> A44R:C: adjacent_3p downward } 0 2 {A44R:C -> A72R:U: pairing parallel trans one_hbond 101 Hw/Hw } 0 3 {A72R:U -> A44R:C: pairing parallel trans one_hbond 101 Hw/Hw } 0 4 {A45R:U -> A46R:G: adjacent_5p upward } 0 5 {A46R:G -> A45R:U: adjacent_3p downward } 0 6 {A46R:G -> A47R:G: adjacent_5p upward } 0 7 {A47R:G -> A46R:G: adjacent_3p downward } 0 8 {A47R:G -> A48R:G: adjacent_5p upward } 0 9 {A48R:G -> A47R:G: adjacent_3p downward } 0 10 {A48R:G -> A71R:G: pairing parallel trans III Ww/Ww } 0 11 {A71R:G -> A48R:G: pairing parallel trans III Ww/Ww } 0 12 {A71R:G -> A72R:U: adjacent_5p } 0 13 {A72R:U -> A71R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 T22R:G 0 1 T23R:C 0 2 T9R:A 0 3 T10R:G 0 4 T11R:C 0 5 T12R:G 0 6 T13R:C 0 [Edges] 0 {T9R:A -> T10R:G: adjacent_5p } 0 1 {T10R:G -> T9R:A: adjacent_3p } 0 2 {T9R:A -> T23R:C: pairing parallel trans one_hbond Hh/Hw } 0 3 {T23R:C -> T9R:A: pairing parallel trans one_hbond Hw/Hh } 0 4 {T10R:G -> T11R:C: adjacent_5p upward } 0 5 {T11R:C -> T10R:G: adjacent_3p downward } 0 6 {T11R:C -> T12R:G: adjacent_5p upward } 0 7 {T12R:G -> T11R:C: adjacent_3p downward } 0 8 {T12R:G -> T13R:C: adjacent_5p upward } 0 9 {T13R:C -> T12R:G: adjacent_3p downward } 0 10 {T12R:G -> T23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T23R:C -> T12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T13R:C -> T22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {T22R:G -> T13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {T22R:G -> T23R:C: adjacent_5p upward } 0 15 {T23R:C -> T22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:A 0 2 A9R:A 0 3 A10R:G 0 4 A11R:C 0 5 A12R:U 0 6 A13R:C 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A23R:A: pairing parallel trans II Hh/Hh } 0 3 {A23R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A11R:C -> A12R:U: adjacent_5p upward } 0 7 {A12R:U -> A11R:C: adjacent_3p downward } 0 8 {A12R:U -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:U: adjacent_3p downward } 0 10 {A12R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A23R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:A: adjacent_5p upward } 0 15 {A23R:A -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C921R:G 0 1 C922R:A 0 2 C909R:A 0 3 C910R:G 0 4 C911R:C 0 5 C912R:U 0 6 C913R:C 0 [Edges] 0 {C909R:A -> C910R:G: adjacent_5p } 0 1 {C910R:G -> C909R:A: adjacent_3p } 0 2 {C909R:A -> C922R:A: pairing parallel trans II Hh/Hh } 0 3 {C922R:A -> C909R:A: pairing parallel trans II Hh/Hh } 0 4 {C910R:G -> C911R:C: adjacent_5p upward } 0 5 {C911R:C -> C910R:G: adjacent_3p downward } 0 6 {C911R:C -> C912R:U: adjacent_5p upward } 0 7 {C912R:U -> C911R:C: adjacent_3p downward } 0 8 {C912R:U -> C913R:C: adjacent_5p upward } 0 9 {C913R:C -> C912R:U: adjacent_3p downward } 0 10 {C912R:U -> C922R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C922R:A -> C912R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C913R:C -> C921R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C921R:G -> C913R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C921R:G -> C922R:A: adjacent_5p upward } 0 15 {C922R:A -> C921R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 D921R:G 0 1 D922R:A 0 2 D909R:A 0 3 D910R:G 0 4 D911R:C 0 5 D912R:U 0 6 D913R:C 0 [Edges] 0 {D909R:A -> D910R:G: adjacent_5p } 0 1 {D910R:G -> D909R:A: adjacent_3p } 0 2 {D909R:A -> D922R:A: pairing parallel trans II Hh/Hh } 0 3 {D922R:A -> D909R:A: pairing parallel trans II Hh/Hh } 0 4 {D910R:G -> D911R:C: adjacent_5p upward } 0 5 {D911R:C -> D910R:G: adjacent_3p downward } 0 6 {D911R:C -> D912R:U: adjacent_5p upward } 0 7 {D912R:U -> D911R:C: adjacent_3p downward } 0 8 {D912R:U -> D913R:C: adjacent_5p } 0 9 {D913R:C -> D912R:U: adjacent_3p } 0 10 {D912R:U -> D922R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D922R:A -> D912R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D913R:C -> D921R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D921R:G -> D913R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D921R:G -> D922R:A: adjacent_5p upward } 0 15 {D922R:A -> D921R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B523R:G 0 1 B524R:A 0 2 B509R:A 0 3 B510R:G 0 4 B511R:U 0 5 B512R:U 0 6 B513R:C 0 [Edges] 0 {B509R:A -> B510R:G: adjacent_5p } 0 1 {B510R:G -> B509R:A: adjacent_3p } 0 2 {B509R:A -> B524R:A: pairing parallel trans II Hh/Hh } 0 3 {B524R:A -> B509R:A: pairing parallel trans II Hh/Hh } 0 4 {B510R:G -> B511R:U: adjacent_5p upward } 0 5 {B511R:U -> B510R:G: adjacent_3p downward } 0 6 {B511R:U -> B512R:U: adjacent_5p } 0 7 {B512R:U -> B511R:U: adjacent_3p } 0 8 {B512R:U -> B513R:C: adjacent_5p upward } 0 9 {B513R:C -> B512R:U: adjacent_3p downward } 0 10 {B512R:U -> B524R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B524R:A -> B512R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B513R:C -> B523R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B523R:G -> B513R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B523R:G -> B524R:A: adjacent_5p upward } 0 15 {B524R:A -> B523R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B29R:A 0 1 B30R:G 0 2 A9R:G 0 3 A10R:G 0 4 A11R:A 0 5 A12R:G 0 6 A13R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> A13R:C: pairing parallel cis one_hbond 124 Wh/Wh } 0 3 {A13R:C -> A9R:G: pairing parallel cis one_hbond 124 Wh/Wh } 0 4 {A9R:G -> B29R:A: inward } 0 5 {B29R:A -> A9R:G: inward } 0 6 {A9R:G -> B30R:G: pairing parallel cis one_hbond Hh/Ww } 0 7 {B30R:G -> A9R:G: pairing parallel cis one_hbond Ww/Hh } 0 8 {A10R:G -> A11R:A: adjacent_5p upward } 0 9 {A11R:A -> A10R:G: adjacent_3p downward } 0 10 {A11R:A -> A12R:G: adjacent_5p upward } 0 11 {A12R:G -> A11R:A: adjacent_3p downward } 0 12 {A12R:G -> A13R:C: adjacent_5p upward } 0 13 {A13R:C -> A12R:G: adjacent_3p downward } 0 14 {A13R:C -> B29R:A: pairing antiparallel cis one_hbond Hw/Ww } 0 15 {B29R:A -> A13R:C: pairing antiparallel cis one_hbond Ww/Hw } 0 16 {B29R:A -> B30R:G: adjacent_5p } 0 17 {B30R:G -> B29R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 5 . . . 15 1 17 . 7 . . . . 2 4 6 . 0 . . 2 3 . . 1 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 14 . 3 . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B29R:G 0 1 B30R:G 0 2 A9R:G 0 3 A10R:G 0 4 A11R:A 0 5 A12R:G 0 6 A13R:U 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> A11R:A: downward } 0 3 {A11R:A -> A9R:G: upward } 0 4 {A9R:G -> B29R:G: inward } 0 5 {B29R:G -> A9R:G: inward } 0 6 {A9R:G -> B30R:G: pairing parallel cis one_hbond 111 Hh/Ww } 0 7 {B30R:G -> A9R:G: pairing parallel cis one_hbond 111 Ww/Hh } 0 8 {A10R:G -> A11R:A: adjacent_5p upward } 0 9 {A11R:A -> A10R:G: adjacent_3p downward } 0 10 {A11R:A -> A12R:G: adjacent_5p } 0 11 {A12R:G -> A11R:A: adjacent_3p } 0 12 {A11R:A -> B30R:G: pairing parallel cis one_hbond 66 Wh/Wh } 0 13 {B30R:G -> A11R:A: pairing parallel cis one_hbond 66 Wh/Wh } 0 14 {A12R:G -> A13R:U: adjacent_5p upward } 0 15 {A13R:U -> A12R:G: adjacent_3p downward } 0 16 {A13R:U -> B29R:G: pairing antiparallel trans one_hbond Bh/Ww } 0 17 {B29R:G -> A13R:U: pairing antiparallel trans one_hbond Ww/Bh } 0 18 {B29R:G -> B30R:G: adjacent_5p } 0 19 {B30R:G -> B29R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 5 . . . 17 1 19 . 7 . 13 . . 2 4 6 . 0 2 . . 3 . . 1 . 8 . . 4 . 12 3 9 . 10 . 5 . . . . 11 . 14 6 16 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A16R:G 0 3 A17R:C 0 4 A18R:G 0 5 A19R:G 0 6 A20R:A 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A18R:G: outward } 0 5 {A18R:G -> A4R:G: outward } 0 6 {A4R:G -> A20R:A: pairing parallel trans 57 Ss/Ss } 0 7 {A20R:A -> A4R:G: pairing parallel trans 57 Ss/Ss } 0 8 {A5R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A16R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:G -> A17R:C: adjacent_5p upward } 0 11 {A17R:C -> A16R:G: adjacent_3p downward } 0 12 {A17R:C -> A18R:G: adjacent_5p } 0 13 {A18R:G -> A17R:C: adjacent_3p } 0 14 {A18R:G -> A19R:G: adjacent_5p } 0 15 {A19R:G -> A18R:G: adjacent_3p } 0 16 {A19R:G -> A20R:A: adjacent_5p } 0 17 {A20R:A -> A19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 4 . 6 1 1 . 8 . . . . 2 . 9 . 10 . . . 3 3 . 11 . 12 . . 4 5 . . 13 . 14 . 5 . . . . 15 . 16 6 7 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A172R:A 0 1 A173R:A 0 2 A167R:U 0 3 A168R:U 0 4 A169R:G 0 5 A170R:C 0 6 A171R:A 0 [Edges] 0 {A167R:U -> A168R:U: adjacent_5p } 0 1 {A168R:U -> A167R:U: adjacent_3p } 0 2 {A167R:U -> A171R:A: downward } 0 3 {A171R:A -> A167R:U: upward } 0 4 {A167R:U -> A173R:A: pairing parallel trans one_hbond 51 Wh/Wh } 0 5 {A173R:A -> A167R:U: pairing parallel trans one_hbond 51 Wh/Wh } 0 6 {A168R:U -> A169R:G: adjacent_5p } 0 7 {A169R:G -> A168R:U: adjacent_3p } 0 8 {A169R:G -> A170R:C: adjacent_5p upward } 0 9 {A170R:C -> A169R:G: adjacent_3p downward } 0 10 {A170R:C -> A171R:A: adjacent_5p upward } 0 11 {A171R:A -> A170R:C: adjacent_3p downward } 0 12 {A171R:A -> A172R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {A172R:A -> A171R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {A172R:A -> A173R:A: adjacent_5p upward } 0 15 {A173R:A -> A172R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 B172R:A 0 1 B173R:A 0 2 B167R:U 0 3 B168R:U 0 4 B169R:G 0 5 B170R:C 0 6 B171R:A 0 [Edges] 0 {B167R:U -> B168R:U: adjacent_5p } 0 1 {B168R:U -> B167R:U: adjacent_3p } 0 2 {B167R:U -> B171R:A: downward } 0 3 {B171R:A -> B167R:U: upward } 0 4 {B167R:U -> B173R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 5 {B173R:A -> B167R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 6 {B168R:U -> B169R:G: adjacent_5p } 0 7 {B169R:G -> B168R:U: adjacent_3p } 0 8 {B169R:G -> B170R:C: adjacent_5p upward } 0 9 {B170R:C -> B169R:G: adjacent_3p downward } 0 10 {B170R:C -> B171R:A: adjacent_5p upward } 0 11 {B171R:A -> B170R:C: adjacent_3p downward } 0 12 {B171R:A -> B172R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {B172R:A -> B171R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {B172R:A -> B173R:A: adjacent_5p upward } 0 15 {B173R:A -> B172R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A39R:C 0 1 A40R:U 0 2 A22R:A 0 3 A23R:U 0 4 A24R:C 0 5 A25R:U 0 6 A26R:G 0 [Edges] 0 {A22R:A -> A23R:U: adjacent_5p upward } 0 1 {A23R:U -> A22R:A: adjacent_3p downward } 0 2 {A22R:A -> A40R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A40R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A23R:U -> A24R:C: adjacent_5p } 0 5 {A24R:C -> A23R:U: adjacent_3p } 0 6 {A24R:C -> A25R:U: adjacent_5p } 0 7 {A25R:U -> A24R:C: adjacent_3p } 0 8 {A25R:U -> A26R:G: adjacent_5p } 0 9 {A26R:G -> A25R:U: adjacent_3p } 0 10 {A26R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A39R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A39R:C -> A40R:U: adjacent_5p } 0 13 {A40R:U -> A39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B23R:A 0 1 B24R:A 0 2 B57R:A 0 3 B58R:U 0 4 B59R:A 0 5 B60R:U 0 6 B61R:U 0 [Edges] 0 {B23R:A -> B24R:A: adjacent_5p upward } 0 1 {B24R:A -> B23R:A: adjacent_3p downward } 0 2 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 3 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 4 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 5 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 6 {B24R:A -> B57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 7 {B57R:A -> B24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 8 {B57R:A -> B58R:U: adjacent_5p } 0 9 {B58R:U -> B57R:A: adjacent_3p } 0 10 {B57R:A -> B59R:A: upward } 0 11 {B59R:A -> B57R:A: downward } 0 12 {B58R:U -> B59R:A: adjacent_5p } 0 13 {B59R:A -> B58R:U: adjacent_3p } 0 14 {B59R:A -> B60R:U: adjacent_5p upward } 0 15 {B60R:U -> B59R:A: adjacent_3p downward } 0 16 {B60R:U -> B61R:U: adjacent_5p } 0 17 {B61R:U -> B60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . . . . 2 . 7 . 8 10 . . 3 . . 9 . 12 . . 4 3 . 11 13 . 14 . 5 . . . . 15 . 16 6 5 . . . . 17 . [GraphModel] [Vertices] 0 E23R:A 0 1 E24R:A 0 2 E57R:A 0 3 E58R:U 0 4 E59R:A 0 5 E60R:U 0 6 E61R:U 0 [Edges] 0 {E23R:A -> E24R:A: adjacent_5p upward } 0 1 {E24R:A -> E23R:A: adjacent_3p downward } 0 2 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 3 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 4 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {E24R:A -> E57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 7 {E57R:A -> E24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 8 {E57R:A -> E58R:U: adjacent_5p } 0 9 {E58R:U -> E57R:A: adjacent_3p } 0 10 {E57R:A -> E59R:A: upward } 0 11 {E59R:A -> E57R:A: downward } 0 12 {E58R:U -> E59R:A: adjacent_5p } 0 13 {E59R:A -> E58R:U: adjacent_3p } 0 14 {E59R:A -> E60R:U: adjacent_5p upward } 0 15 {E60R:U -> E59R:A: adjacent_3p downward } 0 16 {E60R:U -> E61R:U: adjacent_5p } 0 17 {E61R:U -> E60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . . . . 2 . 7 . 8 10 . . 3 . . 9 . 12 . . 4 3 . 11 13 . 14 . 5 . . . . 15 . 16 6 5 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C49R:C 0 1 C50R:A 0 2 C32R:U 0 3 C33R:G 0 4 C34R:A 0 5 C35R:C 0 6 C36R:C 0 [Edges] 0 {C32R:U -> C33R:G: adjacent_5p upward } 0 1 {C33R:G -> C32R:U: adjacent_3p downward } 0 2 {C32R:U -> C50R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C50R:A -> C32R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C33R:G -> C34R:A: adjacent_5p upward } 0 5 {C34R:A -> C33R:G: adjacent_3p downward } 0 6 {C33R:G -> C49R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C49R:C -> C33R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C33R:G -> C50R:A: outward } 0 9 {C50R:A -> C33R:G: outward } 0 10 {C34R:A -> C35R:C: adjacent_5p } 0 11 {C35R:C -> C34R:A: adjacent_3p } 0 12 {C35R:C -> C36R:C: adjacent_5p upward } 0 13 {C36R:C -> C35R:C: adjacent_3p downward } 0 14 {C36R:C -> C49R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 15 {C49R:C -> C36R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 16 {C49R:C -> C50R:A: adjacent_5p upward } 0 17 {C50R:A -> C49R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . 7 . . 15 1 17 . 3 9 . . . 2 . 2 . 0 . . . 3 6 8 1 . 4 . . 4 . . . 5 . 10 . 5 . . . . 11 . 12 6 14 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 C522R:G 0 1 C523R:G 0 2 C509R:C 0 3 C510R:G 0 4 C511R:U 0 5 C512R:C 0 6 C513R:U 0 [Edges] 0 {C509R:C -> C510R:G: adjacent_5p } 0 1 {C510R:G -> C509R:C: adjacent_3p } 0 2 {C509R:C -> C523R:G: pairing parallel trans Hh/Hh } 0 3 {C523R:G -> C509R:C: pairing parallel trans Hh/Hh } 0 4 {C510R:G -> C511R:U: adjacent_5p upward } 0 5 {C511R:U -> C510R:G: adjacent_3p downward } 0 6 {C511R:U -> C512R:C: adjacent_5p } 0 7 {C512R:C -> C511R:U: adjacent_3p } 0 8 {C512R:C -> C513R:U: adjacent_5p upward } 0 9 {C513R:U -> C512R:C: adjacent_3p downward } 0 10 {C512R:C -> C523R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C523R:G -> C512R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C513R:U -> C522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C522R:G -> C513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C522R:G -> C523R:G: adjacent_5p upward } 0 15 {C523R:G -> C522R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 D522R:G 0 1 D523R:G 0 2 D509R:C 0 3 D510R:G 0 4 D511R:U 0 5 D512R:C 0 6 D513R:U 0 [Edges] 0 {D509R:C -> D510R:G: adjacent_5p } 0 1 {D510R:G -> D509R:C: adjacent_3p } 0 2 {D509R:C -> D523R:G: pairing parallel trans Hh/Hh } 0 3 {D523R:G -> D509R:C: pairing parallel trans Hh/Hh } 0 4 {D510R:G -> D511R:U: adjacent_5p upward } 0 5 {D511R:U -> D510R:G: adjacent_3p downward } 0 6 {D511R:U -> D512R:C: adjacent_5p } 0 7 {D512R:C -> D511R:U: adjacent_3p } 0 8 {D512R:C -> D513R:U: adjacent_5p upward } 0 9 {D513R:U -> D512R:C: adjacent_3p downward } 0 10 {D512R:C -> D523R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D523R:G -> D512R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D513R:U -> D522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D522R:G -> D513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D522R:G -> D523R:G: adjacent_5p upward } 0 15 {D523R:G -> D522R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A29R:G 0 3 A30R:A 0 4 A31R:A 0 5 A32R:U 0 6 A33R:G 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A29R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A29R:G -> A30R:A: adjacent_5p } 0 7 {A30R:A -> A29R:G: adjacent_3p } 0 8 {A29R:G -> A31R:A: pairing parallel trans X Ss/Ww } 0 9 {A31R:A -> A29R:G: pairing parallel trans X Ww/Ss } 0 10 {A30R:A -> A31R:A: adjacent_5p } 0 11 {A31R:A -> A30R:A: adjacent_3p } 0 12 {A31R:A -> A32R:U: adjacent_5p } 0 13 {A32R:U -> A31R:A: adjacent_3p } 0 14 {A31R:A -> A33R:G: upward } 0 15 {A33R:G -> A31R:A: downward } 0 16 {A32R:U -> A33R:G: adjacent_5p } 0 17 {A33R:G -> A32R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 8 . . 3 . . 7 . 10 . . 4 . . 9 11 . 12 14 5 . . . . 13 . 16 6 3 . . . 15 17 . MOLECULE: [GraphModel] [Vertices] 0 A39R:C 0 1 A40R:U 0 2 A22R:A 0 3 A23R:U 0 4 A24R:U 0 5 A25R:U 0 6 A26R:G 0 [Edges] 0 {A22R:A -> A23R:U: adjacent_5p } 0 1 {A23R:U -> A22R:A: adjacent_3p } 0 2 {A22R:A -> A40R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A40R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A23R:U -> A24R:U: adjacent_5p } 0 5 {A24R:U -> A23R:U: adjacent_3p } 0 6 {A24R:U -> A25R:U: adjacent_5p } 0 7 {A25R:U -> A24R:U: adjacent_3p } 0 8 {A25R:U -> A26R:G: adjacent_5p } 0 9 {A26R:G -> A25R:U: adjacent_3p } 0 10 {A26R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A39R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A26R:G -> A40R:U: outward } 0 13 {A40R:U -> A26R:G: outward } 0 14 {A39R:C -> A40R:U: adjacent_5p } 0 15 {A40R:U -> A39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 3 . . . 13 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B22R:G 0 1 B23R:A 0 2 B9R:A 0 3 B10R:G 0 4 B11R:C 0 5 B12R:U 0 6 B13R:C 0 [Edges] 0 {B9R:A -> B10R:G: adjacent_5p } 0 1 {B10R:G -> B9R:A: adjacent_3p } 0 2 {B9R:A -> B23R:A: pairing parallel trans II Hh/Hh } 0 3 {B23R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 4 {B10R:G -> B11R:C: adjacent_5p upward } 0 5 {B11R:C -> B10R:G: adjacent_3p downward } 0 6 {B11R:C -> B12R:U: adjacent_5p } 0 7 {B12R:U -> B11R:C: adjacent_3p } 0 8 {B12R:U -> B13R:C: adjacent_5p upward } 0 9 {B13R:C -> B12R:U: adjacent_3p downward } 0 10 {B12R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B23R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B13R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B22R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B22R:G -> B23R:A: adjacent_5p upward } 0 15 {B23R:A -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 T22R:G 0 1 T23R:A 0 2 T9R:A 0 3 T10R:G 0 4 T11R:C 0 5 T12R:U 0 6 T13R:C 0 [Edges] 0 {T9R:A -> T10R:G: adjacent_5p } 0 1 {T10R:G -> T9R:A: adjacent_3p } 0 2 {T9R:A -> T23R:A: pairing parallel trans II Hh/Hh } 0 3 {T23R:A -> T9R:A: pairing parallel trans II Hh/Hh } 0 4 {T10R:G -> T11R:C: adjacent_5p upward } 0 5 {T11R:C -> T10R:G: adjacent_3p downward } 0 6 {T11R:C -> T12R:U: adjacent_5p upward } 0 7 {T12R:U -> T11R:C: adjacent_3p downward } 0 8 {T12R:U -> T13R:C: adjacent_5p upward } 0 9 {T13R:C -> T12R:U: adjacent_3p downward } 0 10 {T12R:U -> T23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {T23R:A -> T12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {T13R:C -> T22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {T22R:G -> T13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {T22R:G -> T23R:A: adjacent_5p upward } 0 15 {T23R:A -> T22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 D415R:C 0 1 D416R:C 0 2 E408R:G 0 3 E409R:U 0 4 E410R:U 0 5 E411R:C 0 6 E412R:G 0 [Edges] 0 {D415R:C -> D416R:C: adjacent_5p upward } 0 1 {D416R:C -> D415R:C: adjacent_3p downward } 0 2 {D415R:C -> E412R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E412R:G -> D415R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D416R:C -> E408R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {E408R:G -> D416R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {E408R:G -> E409R:U: adjacent_5p } 0 7 {E409R:U -> E408R:G: adjacent_3p } 0 8 {E408R:G -> E412R:G: upward } 0 9 {E412R:G -> E408R:G: downward } 0 10 {E409R:U -> E410R:U: adjacent_5p } 0 11 {E410R:U -> E409R:U: adjacent_3p } 0 12 {E410R:U -> E411R:C: adjacent_5p } 0 13 {E411R:C -> E410R:U: adjacent_3p } 0 14 {E411R:C -> E412R:G: adjacent_5p } 0 15 {E412R:G -> E411R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . 8 3 . . 7 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 3 . 9 . . 15 . [GraphModel] [Vertices] 0 E415R:C 0 1 E416R:C 0 2 D408R:G 0 3 D409R:U 0 4 D410R:U 0 5 D411R:C 0 6 D412R:G 0 [Edges] 0 {D408R:G -> D409R:U: adjacent_5p } 0 1 {D409R:U -> D408R:G: adjacent_3p } 0 2 {D408R:G -> D412R:G: upward } 0 3 {D412R:G -> D408R:G: downward } 0 4 {D408R:G -> E416R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {E416R:C -> D408R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D409R:U -> D410R:U: adjacent_5p } 0 7 {D410R:U -> D409R:U: adjacent_3p } 0 8 {D410R:U -> D411R:C: adjacent_5p } 0 9 {D411R:C -> D410R:U: adjacent_3p } 0 10 {D411R:C -> D412R:G: adjacent_5p } 0 11 {D412R:G -> D411R:C: adjacent_3p } 0 12 {D412R:G -> E415R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E415R:C -> D412R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E415R:C -> E416R:C: adjacent_5p } 0 15 {E416R:C -> E415R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C7R:A 0 1 C8R:C 0 2 C15R:G 0 3 C16R:C 0 4 C17R:G 0 5 C18R:U 0 6 C19R:G 0 [Edges] 0 {C7R:A -> C8R:C: adjacent_5p } 0 1 {C8R:C -> C7R:A: adjacent_3p } 0 2 {C7R:A -> C17R:G: inward } 0 3 {C17R:G -> C7R:A: inward } 0 4 {C7R:A -> C19R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {C19R:G -> C7R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {C8R:C -> C15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C15R:G -> C8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C15R:G -> C16R:C: adjacent_5p upward } 0 9 {C16R:C -> C15R:G: adjacent_3p downward } 0 10 {C16R:C -> C17R:G: adjacent_5p } 0 11 {C17R:G -> C16R:C: adjacent_3p } 0 12 {C17R:G -> C18R:U: adjacent_5p } 0 13 {C18R:U -> C17R:G: adjacent_3p } 0 14 {C18R:U -> C19R:G: adjacent_5p } 0 15 {C19R:G -> C18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 . . 9 . 10 . . 4 3 . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . [GraphModel] [Vertices] 0 D7R:A 0 1 D8R:C 0 2 D15R:G 0 3 D16R:C 0 4 D17R:G 0 5 D18R:U 0 6 D19R:G 0 [Edges] 0 {D7R:A -> D8R:C: adjacent_5p } 0 1 {D8R:C -> D7R:A: adjacent_3p } 0 2 {D7R:A -> D17R:G: inward } 0 3 {D17R:G -> D7R:A: inward } 0 4 {D7R:A -> D19R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {D19R:G -> D7R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {D8R:C -> D15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D15R:G -> D8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D15R:G -> D16R:C: adjacent_5p upward } 0 9 {D16R:C -> D15R:G: adjacent_3p downward } 0 10 {D16R:C -> D17R:G: adjacent_5p } 0 11 {D17R:G -> D16R:C: adjacent_3p } 0 12 {D17R:G -> D18R:U: adjacent_5p } 0 13 {D18R:U -> D17R:G: adjacent_3p } 0 14 {D18R:U -> D19R:G: adjacent_5p } 0 15 {D19R:G -> D18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 . . 9 . 10 . . 4 3 . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 3R:C 0 1 4R:G 0 2 6R:U 0 3 7R:U 0 4 8R:G 0 5 9R:C 0 6 10R:G 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p upward } 0 1 {4R:G -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {10R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 6R:U: pairing antiparallel trans one_hbond Sw/Wh } 0 5 {6R:U -> 4R:G: pairing antiparallel trans one_hbond Wh/Sw } 0 6 {4R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {9R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:U -> 7R:U: adjacent_5p } 0 9 {7R:U -> 6R:U: adjacent_3p } 0 10 {6R:U -> 9R:C: pairing antiparallel cis one_hbond 106 Ww/Bs } 0 11 {9R:C -> 6R:U: pairing antiparallel cis one_hbond 106 Bs/Ww } 0 12 {7R:U -> 8R:G: adjacent_5p upward } 0 13 {8R:G -> 7R:U: adjacent_3p downward } 0 14 {8R:G -> 9R:C: adjacent_5p } 0 15 {9R:C -> 8R:G: adjacent_3p } 0 16 {9R:C -> 10R:G: adjacent_5p upward } 0 17 {10R:G -> 9R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . 10 . 3 . . 9 . 12 . . 4 . . . 13 . 14 . 5 . 7 11 . 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 27R:A 0 1 28R:G 0 2 13R:U 0 3 14R:A 0 4 15R:G 0 5 16R:C 0 6 17R:G 0 [Edges] 0 {13R:U -> 14R:A: adjacent_5p } 0 1 {14R:A -> 13R:U: adjacent_3p } 0 2 {13R:U -> 28R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {28R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {14R:A -> 15R:G: adjacent_5p upward } 0 5 {15R:G -> 14R:A: adjacent_3p downward } 0 6 {15R:G -> 16R:C: adjacent_5p upward } 0 7 {16R:C -> 15R:G: adjacent_3p downward } 0 8 {16R:C -> 17R:G: adjacent_5p } 0 9 {17R:G -> 16R:C: adjacent_3p } 0 10 {17R:G -> 27R:A: pairing parallel trans one_hbond Ss/Wh } 0 11 {27R:A -> 17R:G: pairing parallel trans one_hbond Wh/Ss } 0 12 {27R:A -> 28R:G: adjacent_5p } 0 13 {28R:G -> 27R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 R121R:C 0 1 R122R:C 0 2 R138R:G 0 3 R139R:G 0 4 R140R:G 0 5 R141R:C 0 6 R142R:A 0 [Edges] 0 {R121R:C -> R122R:C: adjacent_5p upward } 0 1 {R122R:C -> R121R:C: adjacent_3p downward } 0 2 {R121R:C -> R139R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R139R:G -> R121R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R121R:C -> R142R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 5 {R142R:A -> R121R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 6 {R122R:C -> R138R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R138R:G -> R122R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R138R:G -> R139R:G: adjacent_5p upward } 0 9 {R139R:G -> R138R:G: adjacent_3p downward } 0 10 {R139R:G -> R140R:G: adjacent_5p upward } 0 11 {R140R:G -> R139R:G: adjacent_3p downward } 0 12 {R140R:G -> R141R:C: adjacent_5p upward } 0 13 {R141R:C -> R140R:G: adjacent_3p downward } 0 14 {R141R:C -> R142R:A: adjacent_5p } 0 15 {R142R:A -> R141R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 3 . 9 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . [GraphModel] [Vertices] 0 R160R:U 0 1 R161R:G 0 2 R141R:C 0 3 R142R:A 0 4 R143R:A 0 5 R144R:C 0 6 R145R:A 0 [Edges] 0 {R141R:C -> R142R:A: adjacent_5p } 0 1 {R142R:A -> R141R:C: adjacent_3p } 0 2 {R141R:C -> R143R:A: pairing parallel cis one_hbond 80 Ws/Hw } 0 3 {R143R:A -> R141R:C: pairing parallel cis one_hbond 80 Hw/Ws } 0 4 {R141R:C -> R161R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 5 {R161R:G -> R141R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 6 {R142R:A -> R143R:A: adjacent_5p upward } 0 7 {R143R:A -> R142R:A: adjacent_3p downward } 0 8 {R143R:A -> R144R:C: adjacent_5p upward } 0 9 {R144R:C -> R143R:A: adjacent_3p downward } 0 10 {R144R:C -> R145R:A: adjacent_5p upward } 0 11 {R145R:A -> R144R:C: adjacent_3p downward } 0 12 {R144R:C -> R161R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R161R:G -> R144R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R145R:A -> R160R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {R160R:U -> R145R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {R145R:A -> R161R:G: outward } 0 17 {R161R:G -> R145R:A: outward } 0 18 {R160R:U -> R161R:G: adjacent_5p } 0 19 {R161R:G -> R160R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . . . 15 1 19 . 5 . . 13 17 2 . 4 . 0 2 . . 3 . . 1 . 6 . . 4 . . 3 7 . 8 . 5 . 12 . . 9 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 R161R:G 0 1 R162R:G 0 2 R140R:G 0 3 R141R:C 0 4 R142R:A 0 5 R143R:A 0 6 R144R:C 0 [Edges] 0 {R140R:G -> R141R:C: adjacent_5p upward } 0 1 {R141R:C -> R140R:G: adjacent_3p downward } 0 2 {R140R:G -> R162R:G: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {R162R:G -> R140R:G: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {R141R:C -> R142R:A: adjacent_5p } 0 5 {R142R:A -> R141R:C: adjacent_3p } 0 6 {R141R:C -> R143R:A: pairing parallel cis one_hbond 80 Ws/Hw } 0 7 {R143R:A -> R141R:C: pairing parallel cis one_hbond 80 Hw/Ws } 0 8 {R141R:C -> R161R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 9 {R161R:G -> R141R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 10 {R142R:A -> R143R:A: adjacent_5p upward } 0 11 {R143R:A -> R142R:A: adjacent_3p downward } 0 12 {R143R:A -> R144R:C: adjacent_5p upward } 0 13 {R144R:C -> R143R:A: adjacent_3p downward } 0 14 {R143R:A -> R162R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {R162R:G -> R143R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {R144R:C -> R161R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {R161R:G -> R144R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {R161R:G -> R162R:G: adjacent_5p upward } 0 19 {R162R:G -> R161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . 9 . . 17 1 19 . 3 . . 15 . 2 . 2 . 0 . . . 3 8 . 1 . 4 6 . 4 . . . 5 . 10 . 5 . 14 . 7 11 . 12 6 16 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A16R:C 0 1 A18R:G 0 2 A55R:U 0 3 A56R:C 0 4 A57R:G 0 5 A58R:A 0 6 A59R:C 0 [Edges] 0 {A16R:C -> A18R:G: adjacent_5p } 0 1 {A18R:G -> A16R:C: adjacent_3p } 0 2 {A16R:C -> A59R:C: pairing parallel trans XV Ww/Ww } 0 3 {A59R:C -> A16R:C: pairing parallel trans XV Ww/Ww } 0 4 {A18R:G -> A55R:U: pairing parallel trans 87 Ww/Bs } 0 5 {A55R:U -> A18R:G: pairing parallel trans 87 Bs/Ww } 0 6 {A18R:G -> A57R:G: inward } 0 7 {A57R:G -> A18R:G: inward } 0 8 {A18R:G -> A58R:A: outward } 0 9 {A58R:A -> A18R:G: outward } 0 10 {A55R:U -> A56R:C: adjacent_5p } 0 11 {A56R:C -> A55R:U: adjacent_3p } 0 12 {A56R:C -> A57R:G: adjacent_5p upward } 0 13 {A57R:G -> A56R:C: adjacent_3p downward } 0 14 {A57R:G -> A58R:A: adjacent_5p } 0 15 {A58R:A -> A57R:G: adjacent_3p } 0 16 {A58R:A -> A59R:C: adjacent_5p } 0 17 {A59R:C -> A58R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . 6 8 . 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . 7 . 13 . 14 . 5 . 9 . . 15 . 16 6 3 . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:C 0 2 A29R:G 0 3 A30R:A 0 4 A31R:U 0 5 A32R:A 0 6 A33R:U 0 [Edges] 0 {A6R:A -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:A: adjacent_3p } 0 2 {A6R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A33R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A29R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A29R:G -> A30R:A: adjacent_5p upward } 0 7 {A30R:A -> A29R:G: adjacent_3p downward } 0 8 {A30R:A -> A31R:U: adjacent_5p } 0 9 {A31R:U -> A30R:A: adjacent_3p } 0 10 {A31R:U -> A32R:A: adjacent_5p } 0 11 {A32R:A -> A31R:U: adjacent_3p } 0 12 {A32R:A -> A33R:U: adjacent_5p upward } 0 13 {A33R:U -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . [GraphModel] [Vertices] 0 A25R:C 0 1 A26R:G 0 2 A10R:C 0 3 A11R:A 0 4 A12R:G 0 5 A13R:A 0 6 A14R:G 0 [Edges] 0 {A10R:C -> A11R:A: adjacent_5p } 0 1 {A11R:A -> A10R:C: adjacent_3p } 0 2 {A10R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:A -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:A: adjacent_3p } 0 6 {A12R:G -> A13R:A: adjacent_5p } 0 7 {A13R:A -> A12R:G: adjacent_3p } 0 8 {A13R:A -> A14R:G: adjacent_5p } 0 9 {A14R:G -> A13R:A: adjacent_3p } 0 10 {A14R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A25R:C -> A26R:G: adjacent_5p } 0 13 {A26R:G -> A25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A228R:C 0 1 A229R:C 0 2 A111R:G 0 3 A112R:A 0 4 A113R:A 0 5 A114R:A 0 6 A115R:G 0 [Edges] 0 {A111R:G -> A112R:A: adjacent_5p } 0 1 {A112R:A -> A111R:G: adjacent_3p } 0 2 {A111R:G -> A229R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A229R:C -> A111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A112R:A -> A113R:A: adjacent_5p } 0 5 {A113R:A -> A112R:A: adjacent_3p } 0 6 {A113R:A -> A114R:A: adjacent_5p } 0 7 {A114R:A -> A113R:A: adjacent_3p } 0 8 {A114R:A -> A115R:G: adjacent_5p upward } 0 9 {A115R:G -> A114R:A: adjacent_3p downward } 0 10 {A115R:G -> A228R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A228R:C -> A115R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A228R:C -> A229R:C: adjacent_5p upward } 0 13 {A229R:C -> A228R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B39R:C 0 1 B40R:U 0 2 B22R:A 0 3 B23R:U 0 4 B24R:C 0 5 B25R:U 0 6 B26R:G 0 [Edges] 0 {B22R:A -> B23R:U: adjacent_5p } 0 1 {B23R:U -> B22R:A: adjacent_3p } 0 2 {B22R:A -> B40R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B40R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B23R:U -> B24R:C: adjacent_5p } 0 5 {B24R:C -> B23R:U: adjacent_3p } 0 6 {B24R:C -> B25R:U: adjacent_5p } 0 7 {B25R:U -> B24R:C: adjacent_3p } 0 8 {B25R:U -> B26R:G: adjacent_5p } 0 9 {B26R:G -> B25R:U: adjacent_3p } 0 10 {B26R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B39R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B39R:C -> B40R:U: adjacent_5p } 0 13 {B40R:U -> B39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 '0'79R:G 0 1 '0'80R:A 0 2 '0'94R:G 0 3 '0'95R:A 0 4 '0'96R:A 0 5 '0'97R:G 0 6 '0'98R:A 0 [Edges] 0 {'0'79R:G -> '0'80R:A: adjacent_5p } 0 1 {'0'80R:A -> '0'79R:G: adjacent_3p } 0 2 {'0'79R:G -> '0'98R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 3 {'0'98R:A -> '0'79R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 4 {'0'80R:A -> '0'94R:G: pairing parallel trans one_hbond Bs/Ss } 0 5 {'0'94R:G -> '0'80R:A: pairing parallel trans one_hbond Ss/Bs } 0 6 {'0'80R:A -> '0'95R:A: inward } 0 7 {'0'95R:A -> '0'80R:A: inward } 0 8 {'0'80R:A -> '0'97R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'97R:G -> '0'80R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'80R:A -> '0'98R:A: outward } 0 11 {'0'98R:A -> '0'80R:A: outward } 0 12 {'0'94R:G -> '0'95R:A: adjacent_5p } 0 13 {'0'95R:A -> '0'94R:G: adjacent_3p } 0 14 {'0'95R:A -> '0'96R:A: adjacent_5p } 0 15 {'0'96R:A -> '0'95R:A: adjacent_3p } 0 16 {'0'95R:A -> '0'97R:G: upward } 0 17 {'0'97R:G -> '0'95R:A: downward } 0 18 {'0'96R:A -> '0'97R:G: adjacent_5p } 0 19 {'0'97R:G -> '0'96R:A: adjacent_3p } 0 20 {'0'97R:G -> '0'98R:A: adjacent_5p } 0 21 {'0'98R:A -> '0'97R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 6 . 8 10 2 . 5 . 12 . . . 3 . 7 13 . 14 16 . 4 . . . 15 . 18 . 5 . 9 . 17 19 . 20 6 3 11 . . . 21 . [GraphModel] [Vertices] 0 '0'80R:A 0 1 '0'81R:G 0 2 '0'93R:C 0 3 '0'94R:G 0 4 '0'95R:A 0 5 '0'96R:A 0 6 '0'97R:G 0 [Edges] 0 {'0'80R:A -> '0'81R:G: adjacent_5p } 0 1 {'0'81R:G -> '0'80R:A: adjacent_3p } 0 2 {'0'80R:A -> '0'94R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {'0'94R:G -> '0'80R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {'0'80R:A -> '0'95R:A: inward } 0 5 {'0'95R:A -> '0'80R:A: inward } 0 6 {'0'80R:A -> '0'97R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'97R:G -> '0'80R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'81R:G -> '0'93R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'93R:C -> '0'81R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'81R:G -> '0'94R:G: outward } 0 11 {'0'94R:G -> '0'81R:G: outward } 0 12 {'0'93R:C -> '0'94R:G: adjacent_5p upward } 0 13 {'0'94R:G -> '0'93R:C: adjacent_3p downward } 0 14 {'0'94R:G -> '0'95R:A: adjacent_5p } 0 15 {'0'95R:A -> '0'94R:G: adjacent_3p } 0 16 {'0'95R:A -> '0'96R:A: adjacent_5p } 0 17 {'0'96R:A -> '0'95R:A: adjacent_3p } 0 18 {'0'95R:A -> '0'97R:G: upward } 0 19 {'0'97R:G -> '0'95R:A: downward } 0 20 {'0'96R:A -> '0'97R:G: adjacent_5p } 0 21 {'0'97R:G -> '0'96R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 4 . 6 1 1 . 8 10 . . . 2 . 9 . 12 . . . 3 3 11 13 . 14 . . 4 5 . . 15 . 16 18 5 . . . . 17 . 20 6 7 . . . 19 21 . [GraphModel] [Vertices] 0 '0'144R:A 0 1 '0'145R:A 0 2 '0'130R:C 0 3 '0'131R:A 0 4 '0'132R:A 0 5 '0'133R:U 0 6 '0'134R:U 0 [Edges] 0 {'0'130R:C -> '0'131R:A: adjacent_5p } 0 1 {'0'131R:A -> '0'130R:C: adjacent_3p } 0 2 {'0'130R:C -> '0'144R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 3 {'0'144R:A -> '0'130R:C: pairing antiparallel trans one_hbond Hh/Wh } 0 4 {'0'130R:C -> '0'145R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 5 {'0'145R:A -> '0'130R:C: pairing antiparallel trans one_hbond Hw/Ws } 0 6 {'0'131R:A -> '0'132R:A: adjacent_5p upward } 0 7 {'0'132R:A -> '0'131R:A: adjacent_3p downward } 0 8 {'0'132R:A -> '0'133R:U: adjacent_5p upward } 0 9 {'0'133R:U -> '0'132R:A: adjacent_3p downward } 0 10 {'0'133R:U -> '0'134R:U: adjacent_5p upward } 0 11 {'0'134R:U -> '0'133R:U: adjacent_3p downward } 0 12 {'0'133R:U -> '0'145R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'145R:A -> '0'133R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'134R:U -> '0'144R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'144R:A -> '0'134R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'144R:A -> '0'145R:A: adjacent_5p upward } 0 17 {'0'145R:A -> '0'144R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 3 . . . 15 1 17 . 5 . . 13 . 2 2 4 . 0 . . . 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . 12 . . 9 . 10 6 14 . . . . 11 . [GraphModel] [Vertices] 0 '0'428R:G 0 1 '0'429R:A 0 2 '0'408R:A 0 3 '0'409R:U 0 4 '0'410R:A 0 5 '0'411R:A 0 6 '0'412R:C 0 [Edges] 0 {'0'408R:A -> '0'409R:U: adjacent_5p upward } 0 1 {'0'409R:U -> '0'408R:A: adjacent_3p downward } 0 2 {'0'408R:A -> '0'429R:A: pairing parallel cis one_hbond Ww/Wh } 0 3 {'0'429R:A -> '0'408R:A: pairing parallel cis one_hbond Wh/Ww } 0 4 {'0'409R:U -> '0'410R:A: adjacent_5p } 0 5 {'0'410R:A -> '0'409R:U: adjacent_3p } 0 6 {'0'410R:A -> '0'411R:A: adjacent_5p } 0 7 {'0'411R:A -> '0'410R:A: adjacent_3p } 0 8 {'0'410R:A -> '0'428R:G: downward } 0 9 {'0'428R:G -> '0'410R:A: upward } 0 10 {'0'411R:A -> '0'412R:C: adjacent_5p } 0 11 {'0'412R:C -> '0'411R:A: adjacent_3p } 0 12 {'0'412R:C -> '0'428R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'428R:G -> '0'412R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'428R:G -> '0'429R:A: adjacent_5p } 0 15 {'0'429R:A -> '0'428R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . 9 . 13 1 15 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 8 . . 5 . 6 . 5 . . . . 7 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 '0'879R:C 0 1 '0'880R:C 0 2 '0'867R:A 0 3 '0'868R:G 0 4 '0'869R:G 0 5 '0'870R:G 0 6 '0'871R:G 0 [Edges] 0 {'0'867R:A -> '0'868R:G: adjacent_5p } 0 1 {'0'868R:G -> '0'867R:A: adjacent_3p } 0 2 {'0'867R:A -> '0'870R:G: pairing antiparallel cis one_hbond Ss/Sw } 0 3 {'0'870R:G -> '0'867R:A: pairing antiparallel cis one_hbond Sw/Ss } 0 4 {'0'867R:A -> '0'880R:C: pairing parallel trans one_hbond Bs/Ss } 0 5 {'0'880R:C -> '0'867R:A: pairing parallel trans one_hbond Ss/Bs } 0 6 {'0'868R:G -> '0'869R:G: adjacent_5p } 0 7 {'0'869R:G -> '0'868R:G: adjacent_3p } 0 8 {'0'868R:G -> '0'870R:G: outward } 0 9 {'0'870R:G -> '0'868R:G: outward } 0 10 {'0'869R:G -> '0'870R:G: adjacent_5p } 0 11 {'0'870R:G -> '0'869R:G: adjacent_3p } 0 12 {'0'870R:G -> '0'871R:G: adjacent_5p upward } 0 13 {'0'871R:G -> '0'870R:G: adjacent_3p downward } 0 14 {'0'870R:G -> '0'880R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'880R:C -> '0'870R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'871R:G -> '0'879R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'879R:C -> '0'871R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'879R:C -> '0'880R:C: adjacent_5p } 0 19 {'0'880R:C -> '0'879R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . . . 17 1 19 . 5 . . 15 . 2 . 4 . 0 . 2 . 3 . . 1 . 6 8 . 4 . . . 7 . 10 . 5 . 14 3 9 11 . 12 6 16 . . . . 13 . [GraphModel] [Vertices] 0 '0'1215R:A 0 1 '0'1216R:G 0 2 '0'1147R:C 0 3 '0'1148R:C 0 4 '0'1149R:U 0 5 '0'1150R:A 0 6 '0'1151R:G 0 [Edges] 0 {'0'1147R:C -> '0'1148R:C: adjacent_5p upward } 0 1 {'0'1148R:C -> '0'1147R:C: adjacent_3p downward } 0 2 {'0'1147R:C -> '0'1216R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1216R:G -> '0'1147R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1148R:C -> '0'1149R:U: adjacent_5p } 0 5 {'0'1149R:U -> '0'1148R:C: adjacent_3p } 0 6 {'0'1149R:U -> '0'1150R:A: adjacent_5p } 0 7 {'0'1150R:A -> '0'1149R:U: adjacent_3p } 0 8 {'0'1149R:U -> '0'1151R:G: outward } 0 9 {'0'1151R:G -> '0'1149R:U: outward } 0 10 {'0'1149R:U -> '0'1215R:A: downward } 0 11 {'0'1215R:A -> '0'1149R:U: upward } 0 12 {'0'1150R:A -> '0'1151R:G: adjacent_5p } 0 13 {'0'1151R:G -> '0'1150R:A: adjacent_3p } 0 14 {'0'1151R:G -> '0'1215R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'1215R:A -> '0'1151R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'1215R:A -> '0'1216R:G: adjacent_5p } 0 17 {'0'1216R:G -> '0'1215R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . 11 . 15 1 17 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 10 . . 5 . 6 8 5 . . . . 7 . 12 6 14 . . . 9 13 . [GraphModel] [Vertices] 0 '0'1341R:A 0 1 '0'1342R:C 0 2 '0'1312R:G 0 3 '0'1313R:A 0 4 '0'1314R:U 0 5 '0'1315R:G 0 6 '0'1316R:G 0 [Edges] 0 {'0'1312R:G -> '0'1313R:A: adjacent_5p upward } 0 1 {'0'1313R:A -> '0'1312R:G: adjacent_3p downward } 0 2 {'0'1312R:G -> '0'1342R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1342R:C -> '0'1312R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1313R:A -> '0'1314R:U: adjacent_5p } 0 5 {'0'1314R:U -> '0'1313R:A: adjacent_3p } 0 6 {'0'1314R:U -> '0'1315R:G: adjacent_5p } 0 7 {'0'1315R:G -> '0'1314R:U: adjacent_3p } 0 8 {'0'1314R:U -> '0'1341R:A: downward } 0 9 {'0'1341R:A -> '0'1314R:U: upward } 0 10 {'0'1315R:G -> '0'1316R:G: adjacent_5p } 0 11 {'0'1316R:G -> '0'1315R:G: adjacent_3p } 0 12 {'0'1316R:G -> '0'1341R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'1341R:A -> '0'1316R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'1341R:A -> '0'1342R:C: adjacent_5p } 0 15 {'0'1342R:C -> '0'1341R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . 9 . 13 1 15 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 8 . . 5 . 6 . 5 . . . . 7 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 '0'1436R:C 0 1 '0'1437R:A 0 2 '0'1426R:C 0 3 '0'1427R:A 0 4 '0'1428R:C 0 5 '0'1429R:U 0 6 '0'1430R:G 0 [Edges] 0 {'0'1426R:C -> '0'1427R:A: adjacent_5p } 0 1 {'0'1427R:A -> '0'1426R:C: adjacent_3p } 0 2 {'0'1426R:C -> '0'1437R:A: pairing antiparallel trans XXV Ww/Hw } 0 3 {'0'1437R:A -> '0'1426R:C: pairing antiparallel trans XXV Hw/Ww } 0 4 {'0'1427R:A -> '0'1428R:C: adjacent_5p upward } 0 5 {'0'1428R:C -> '0'1427R:A: adjacent_3p downward } 0 6 {'0'1428R:C -> '0'1429R:U: adjacent_5p upward } 0 7 {'0'1429R:U -> '0'1428R:C: adjacent_3p downward } 0 8 {'0'1429R:U -> '0'1430R:G: adjacent_5p upward } 0 9 {'0'1430R:G -> '0'1429R:U: adjacent_3p downward } 0 10 {'0'1429R:U -> '0'1437R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1437R:A -> '0'1429R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1430R:G -> '0'1436R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1436R:C -> '0'1430R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1430R:G -> '0'1437R:A: outward } 0 15 {'0'1437R:A -> '0'1430R:G: outward } 0 16 {'0'1436R:C -> '0'1437R:A: adjacent_5p upward } 0 17 {'0'1437R:A -> '0'1436R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 13 1 17 . 3 . . 11 15 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 14 . . . 9 . [GraphModel] [Vertices] 0 '0'1439R:C 0 1 '0'1440R:U 0 2 '0'1424R:A 0 3 '0'1425R:G 0 4 '0'1426R:C 0 5 '0'1427R:A 0 6 '0'1428R:C 0 [Edges] 0 {'0'1424R:A -> '0'1425R:G: adjacent_5p upward } 0 1 {'0'1425R:G -> '0'1424R:A: adjacent_3p downward } 0 2 {'0'1424R:A -> '0'1440R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1440R:U -> '0'1424R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1425R:G -> '0'1426R:C: adjacent_5p upward } 0 5 {'0'1426R:C -> '0'1425R:G: adjacent_3p downward } 0 6 {'0'1425R:G -> '0'1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1439R:C -> '0'1425R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1426R:C -> '0'1427R:A: adjacent_5p } 0 9 {'0'1427R:A -> '0'1426R:C: adjacent_3p } 0 10 {'0'1427R:A -> '0'1428R:C: adjacent_5p upward } 0 11 {'0'1428R:C -> '0'1427R:A: adjacent_3p downward } 0 12 {'0'1428R:C -> '0'1439R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 13 {'0'1439R:C -> '0'1428R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 14 {'0'1439R:C -> '0'1440R:U: adjacent_5p upward } 0 15 {'0'1440R:U -> '0'1439R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . 7 . . 13 1 15 . 3 . . . . 2 . 2 . 0 . . . 3 6 . 1 . 4 . . 4 . . . 5 . 8 . 5 . . . . 9 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 '0'1456R:C 0 1 '0'1457R:U 0 2 '0'1485R:A 0 3 '0'1486R:A 0 4 '0'1487R:A 0 5 '0'1488R:U 0 6 '0'1489R:G 0 [Edges] 0 {'0'1456R:C -> '0'1457R:U: adjacent_5p upward } 0 1 {'0'1457R:U -> '0'1456R:C: adjacent_3p downward } 0 2 {'0'1456R:C -> '0'1489R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1489R:G -> '0'1456R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1457R:U -> '0'1485R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'1485R:A -> '0'1457R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'1485R:A -> '0'1486R:A: adjacent_5p } 0 7 {'0'1486R:A -> '0'1485R:A: adjacent_3p } 0 8 {'0'1485R:A -> '0'1489R:G: upward } 0 9 {'0'1489R:G -> '0'1485R:A: downward } 0 10 {'0'1486R:A -> '0'1487R:A: adjacent_5p } 0 11 {'0'1487R:A -> '0'1486R:A: adjacent_3p } 0 12 {'0'1487R:A -> '0'1488R:U: adjacent_5p inward } 0 13 {'0'1488R:U -> '0'1487R:A: adjacent_3p inward } 0 14 {'0'1488R:U -> '0'1489R:G: adjacent_5p } 0 15 {'0'1489R:G -> '0'1488R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . 8 3 . . 7 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 3 . 9 . . 15 . [GraphModel] [Vertices] 0 '0'1695R:G 0 1 '0'1696R:U 0 2 '0'1682R:A 0 3 '0'1683R:G 0 4 '0'1684R:A 0 5 '0'1685R:A 0 6 '0'1686R:C 0 [Edges] 0 {'0'1682R:A -> '0'1683R:G: adjacent_5p } 0 1 {'0'1683R:G -> '0'1682R:A: adjacent_3p } 0 2 {'0'1682R:A -> '0'1686R:C: upward } 0 3 {'0'1686R:C -> '0'1682R:A: downward } 0 4 {'0'1682R:A -> '0'1696R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {'0'1696R:U -> '0'1682R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {'0'1683R:G -> '0'1684R:A: adjacent_5p } 0 7 {'0'1684R:A -> '0'1683R:G: adjacent_3p } 0 8 {'0'1684R:A -> '0'1685R:A: adjacent_5p } 0 9 {'0'1685R:A -> '0'1684R:A: adjacent_3p } 0 10 {'0'1685R:A -> '0'1686R:C: adjacent_5p } 0 11 {'0'1686R:C -> '0'1685R:A: adjacent_3p } 0 12 {'0'1686R:C -> '0'1695R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1695R:G -> '0'1686R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1695R:G -> '0'1696R:U: adjacent_5p upward } 0 15 {'0'1696R:U -> '0'1695R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 '0'1983R:C 0 1 '0'1984R:U 0 2 '0'1977R:U 0 3 '0'1978R:A 0 4 '0'1979R:G 0 5 '0'1980R:U 0 6 '0'1981R:A 0 [Edges] 0 {'0'1977R:U -> '0'1978R:A: adjacent_5p } 0 1 {'0'1978R:A -> '0'1977R:U: adjacent_3p } 0 2 {'0'1977R:U -> '0'1981R:A: downward } 0 3 {'0'1981R:A -> '0'1977R:U: upward } 0 4 {'0'1977R:U -> '0'1984R:U: pairing antiparallel cis XVI Ws/Ww } 0 5 {'0'1984R:U -> '0'1977R:U: pairing antiparallel cis XVI Ww/Ws } 0 6 {'0'1978R:A -> '0'1979R:G: adjacent_5p } 0 7 {'0'1979R:G -> '0'1978R:A: adjacent_3p } 0 8 {'0'1978R:A -> '0'1980R:U: inward } 0 9 {'0'1980R:U -> '0'1978R:A: inward } 0 10 {'0'1979R:G -> '0'1980R:U: adjacent_5p } 0 11 {'0'1980R:U -> '0'1979R:G: adjacent_3p } 0 12 {'0'1980R:U -> '0'1981R:A: adjacent_5p } 0 13 {'0'1981R:A -> '0'1980R:U: adjacent_3p } 0 14 {'0'1981R:A -> '0'1983R:C: pairing parallel trans one_hbond 73 Ss/Wh } 0 15 {'0'1983R:C -> '0'1981R:A: pairing parallel trans one_hbond 73 Wh/Ss } 0 16 {'0'1983R:C -> '0'1984R:U: adjacent_5p inward } 0 17 {'0'1984R:U -> '0'1983R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 8 . 4 . . . 7 . 10 . 5 . . . 9 11 . 12 6 14 . 3 . . 13 . [GraphModel] [Vertices] 0 '0'2104R:C 0 1 '0'2105R:C 0 2 '0'2481R:G 0 3 '0'2482R:G 0 4 '0'2483R:A 0 5 '0'2484R:U 0 6 '0'2485R:A 0 [Edges] 0 {'0'2104R:C -> '0'2105R:C: adjacent_5p upward } 0 1 {'0'2105R:C -> '0'2104R:C: adjacent_3p downward } 0 2 {'0'2104R:C -> '0'2485R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {'0'2485R:A -> '0'2104R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {'0'2105R:C -> '0'2481R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2481R:G -> '0'2105R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2481R:G -> '0'2482R:G: adjacent_5p } 0 7 {'0'2482R:G -> '0'2481R:G: adjacent_3p } 0 8 {'0'2482R:G -> '0'2483R:A: adjacent_5p } 0 9 {'0'2483R:A -> '0'2482R:G: adjacent_3p } 0 10 {'0'2483R:A -> '0'2484R:U: adjacent_5p } 0 11 {'0'2484R:U -> '0'2483R:A: adjacent_3p } 0 12 {'0'2484R:U -> '0'2485R:A: adjacent_5p } 0 13 {'0'2485R:A -> '0'2484R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . [GraphModel] [Vertices] 0 '0'2270R:G 0 1 '0'2271R:G 0 2 '0'2119R:C 0 3 '0'2120R:U 0 4 '0'2121R:G 0 5 '0'2122R:C 0 6 '0'2123R:A 0 [Edges] 0 {'0'2119R:C -> '0'2120R:U: adjacent_5p upward } 0 1 {'0'2120R:U -> '0'2119R:C: adjacent_3p downward } 0 2 {'0'2119R:C -> '0'2271R:G: pairing parallel trans one_hbond 121 Hw/Hw } 0 3 {'0'2271R:G -> '0'2119R:C: pairing parallel trans one_hbond 121 Hw/Hw } 0 4 {'0'2120R:U -> '0'2121R:G: adjacent_5p upward } 0 5 {'0'2121R:G -> '0'2120R:U: adjacent_3p downward } 0 6 {'0'2121R:G -> '0'2122R:C: adjacent_5p upward } 0 7 {'0'2122R:C -> '0'2121R:G: adjacent_3p downward } 0 8 {'0'2122R:C -> '0'2123R:A: adjacent_5p } 0 9 {'0'2123R:A -> '0'2122R:C: adjacent_3p } 0 10 {'0'2123R:A -> '0'2270R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {'0'2270R:G -> '0'2123R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {'0'2270R:G -> '0'2271R:G: adjacent_5p } 0 13 {'0'2271R:G -> '0'2270R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 '0'2732R:U 0 1 '0'2733R:U 0 2 '0'2746R:A 0 3 '0'2747R:C 0 4 '0'2748R:G 0 5 '0'2749R:U 0 6 '0'2750R:G 0 [Edges] 0 {'0'2732R:U -> '0'2733R:U: adjacent_5p } 0 1 {'0'2733R:U -> '0'2732R:U: adjacent_3p } 0 2 {'0'2732R:U -> '0'2750R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2750R:G -> '0'2732R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2733R:U -> '0'2746R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2746R:A -> '0'2733R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2746R:A -> '0'2747R:C: adjacent_5p } 0 7 {'0'2747R:C -> '0'2746R:A: adjacent_3p } 0 8 {'0'2746R:A -> '0'2750R:G: upward } 0 9 {'0'2750R:G -> '0'2746R:A: downward } 0 10 {'0'2747R:C -> '0'2748R:G: adjacent_5p outward } 0 11 {'0'2748R:G -> '0'2747R:C: adjacent_3p outward } 0 12 {'0'2748R:G -> '0'2749R:U: adjacent_5p } 0 13 {'0'2749R:U -> '0'2748R:G: adjacent_3p } 0 14 {'0'2749R:U -> '0'2750R:G: adjacent_5p } 0 15 {'0'2750R:G -> '0'2749R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . 8 3 . . 7 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 3 . 9 . . 15 . [GraphModel] [Vertices] 0 '0'2760R:C 0 1 '0'2761R:A 0 2 '0'2718R:C 0 3 '0'2719R:A 0 4 '0'2720R:C 0 5 '0'2721R:U 0 6 '0'2722R:G 0 [Edges] 0 {'0'2718R:C -> '0'2719R:A: adjacent_5p } 0 1 {'0'2719R:A -> '0'2718R:C: adjacent_3p } 0 2 {'0'2718R:C -> '0'2720R:C: pairing parallel cis one_hbond 134 Bs/Hw } 0 3 {'0'2720R:C -> '0'2718R:C: pairing parallel cis one_hbond 134 Hw/Bs } 0 4 {'0'2718R:C -> '0'2761R:A: pairing antiparallel trans XXV Ww/Hw } 0 5 {'0'2761R:A -> '0'2718R:C: pairing antiparallel trans XXV Hw/Ww } 0 6 {'0'2719R:A -> '0'2720R:C: adjacent_5p upward } 0 7 {'0'2720R:C -> '0'2719R:A: adjacent_3p downward } 0 8 {'0'2720R:C -> '0'2721R:U: adjacent_5p upward } 0 9 {'0'2721R:U -> '0'2720R:C: adjacent_3p downward } 0 10 {'0'2721R:U -> '0'2722R:G: adjacent_5p upward } 0 11 {'0'2722R:G -> '0'2721R:U: adjacent_3p downward } 0 12 {'0'2721R:U -> '0'2761R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2761R:A -> '0'2721R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2722R:G -> '0'2760R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2760R:C -> '0'2722R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2722R:G -> '0'2761R:A: outward } 0 17 {'0'2761R:A -> '0'2722R:G: outward } 0 18 {'0'2760R:C -> '0'2761R:A: adjacent_5p } 0 19 {'0'2761R:A -> '0'2760R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . . . 15 1 19 . 5 . . 13 17 2 . 4 . 0 2 . . 3 . . 1 . 6 . . 4 . . 3 7 . 8 . 5 . 12 . . 9 . 10 6 14 16 . . . 11 . [GraphModel] [Vertices] 0 '0'2763R:G 0 1 '0'2764R:C 0 2 '0'2716R:G 0 3 '0'2717R:C 0 4 '0'2718R:C 0 5 '0'2719R:A 0 6 '0'2720R:C 0 [Edges] 0 {'0'2716R:G -> '0'2717R:C: adjacent_5p upward } 0 1 {'0'2717R:C -> '0'2716R:G: adjacent_3p downward } 0 2 {'0'2716R:G -> '0'2764R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2764R:C -> '0'2716R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2717R:C -> '0'2718R:C: adjacent_5p } 0 5 {'0'2718R:C -> '0'2717R:C: adjacent_3p } 0 6 {'0'2717R:C -> '0'2763R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2763R:G -> '0'2717R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2718R:C -> '0'2719R:A: adjacent_5p } 0 9 {'0'2719R:A -> '0'2718R:C: adjacent_3p } 0 10 {'0'2718R:C -> '0'2720R:C: pairing parallel cis one_hbond 134 Bs/Hw } 0 11 {'0'2720R:C -> '0'2718R:C: pairing parallel cis one_hbond 134 Hw/Bs } 0 12 {'0'2719R:A -> '0'2720R:C: adjacent_5p upward } 0 13 {'0'2720R:C -> '0'2719R:A: adjacent_3p downward } 0 14 {'0'2720R:C -> '0'2763R:G: pairing antiparallel cis one_hbond 120 Wh/Ss } 0 15 {'0'2763R:G -> '0'2720R:C: pairing antiparallel cis one_hbond 120 Ss/Wh } 0 16 {'0'2763R:G -> '0'2764R:C: adjacent_5p upward } 0 17 {'0'2764R:C -> '0'2763R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . 7 . . 15 1 17 . 3 . . . . 2 . 2 . 0 . . . 3 6 . 1 . 4 . . 4 . . . 5 . 8 10 5 . . . . 9 . 12 6 14 . . . 11 13 . [GraphModel] [Vertices] 0 '0'2913R:A 0 1 '0'2914R:A 0 2 '0'2823R:G 0 3 '0'2824R:C 0 4 '0'2825R:C 0 5 '0'2826R:G 0 6 '0'2827R:A 0 [Edges] 0 {'0'2823R:G -> '0'2824R:C: adjacent_5p upward } 0 1 {'0'2824R:C -> '0'2823R:G: adjacent_3p downward } 0 2 {'0'2823R:G -> '0'2914R:A: pairing parallel trans one_hbond Ss/Bs } 0 3 {'0'2914R:A -> '0'2823R:G: pairing parallel trans one_hbond Bs/Ss } 0 4 {'0'2824R:C -> '0'2825R:C: adjacent_5p } 0 5 {'0'2825R:C -> '0'2824R:C: adjacent_3p } 0 6 {'0'2825R:C -> '0'2826R:G: adjacent_5p outward } 0 7 {'0'2826R:G -> '0'2825R:C: adjacent_3p outward } 0 8 {'0'2826R:G -> '0'2827R:A: adjacent_5p } 0 9 {'0'2827R:A -> '0'2826R:G: adjacent_3p } 0 10 {'0'2826R:G -> '0'2913R:A: inward } 0 11 {'0'2913R:A -> '0'2826R:G: inward } 0 12 {'0'2826R:G -> '0'2914R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'2914R:A -> '0'2826R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'2827R:A -> '0'2913R:A: pairing antiparallel trans 41 Hh/Ss } 0 15 {'0'2913R:A -> '0'2827R:A: pairing antiparallel trans 41 Ss/Hh } 0 16 {'0'2827R:A -> '0'2914R:A: outward } 0 17 {'0'2914R:A -> '0'2827R:A: outward } 0 18 {'0'2913R:A -> '0'2914R:A: adjacent_5p } 0 19 {'0'2914R:A -> '0'2913R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 18 . . . 11 15 1 19 . 3 . . 13 17 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 10 12 . . 7 . 8 6 14 16 . . . 9 . [GraphModel] [Vertices] 0 '9'3027R:C 0 1 '9'3028R:U 0 2 '9'3054R:A 0 3 '9'3055R:U 0 4 '9'3056R:A 0 5 '9'3057R:A 0 6 '9'3058R:G 0 [Edges] 0 {'9'3027R:C -> '9'3028R:U: adjacent_5p upward } 0 1 {'9'3028R:U -> '9'3027R:C: adjacent_3p downward } 0 2 {'9'3027R:C -> '9'3055R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {'9'3055R:U -> '9'3027R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {'9'3027R:C -> '9'3058R:G: pairing antiparallel cis 127 Bs/Ww } 0 5 {'9'3058R:G -> '9'3027R:C: pairing antiparallel cis 127 Ww/Bs } 0 6 {'9'3028R:U -> '9'3054R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'9'3054R:A -> '9'3028R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'9'3028R:U -> '9'3057R:A: pairing parallel trans one_hbond 44 Ss/Wh } 0 9 {'9'3057R:A -> '9'3028R:U: pairing parallel trans one_hbond 44 Wh/Ss } 0 10 {'9'3054R:A -> '9'3055R:U: adjacent_5p upward } 0 11 {'9'3055R:U -> '9'3054R:A: adjacent_3p downward } 0 12 {'9'3054R:A -> '9'3056R:A: pairing parallel cis one_hbond Ss/Hw } 0 13 {'9'3056R:A -> '9'3054R:A: pairing parallel cis one_hbond Hw/Ss } 0 14 {'9'3055R:U -> '9'3056R:A: adjacent_5p } 0 15 {'9'3056R:A -> '9'3055R:U: adjacent_3p } 0 16 {'9'3056R:A -> '9'3057R:A: adjacent_5p inward } 0 17 {'9'3057R:A -> '9'3056R:A: adjacent_3p inward } 0 18 {'9'3057R:A -> '9'3058R:G: adjacent_5p outward } 0 19 {'9'3058R:G -> '9'3057R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . 8 . 2 . 7 . 10 12 . . 3 3 . 11 . 14 . . 4 . . 13 15 . 16 . 5 . 9 . . 17 . 18 6 5 . . . . 19 . [GraphModel] [Vertices] 0 '9'3028R:U 0 1 '9'3029R:C 0 2 '9'3053R:G 0 3 '9'3054R:A 0 4 '9'3055R:U 0 5 '9'3056R:A 0 6 '9'3057R:A 0 [Edges] 0 {'9'3028R:U -> '9'3029R:C: adjacent_5p upward } 0 1 {'9'3029R:C -> '9'3028R:U: adjacent_3p downward } 0 2 {'9'3028R:U -> '9'3054R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'9'3054R:A -> '9'3028R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'9'3028R:U -> '9'3057R:A: pairing parallel trans one_hbond 44 Ss/Wh } 0 5 {'9'3057R:A -> '9'3028R:U: pairing parallel trans one_hbond 44 Wh/Ss } 0 6 {'9'3029R:C -> '9'3053R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3053R:G -> '9'3029R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3053R:G -> '9'3054R:A: adjacent_5p upward } 0 9 {'9'3054R:A -> '9'3053R:G: adjacent_3p downward } 0 10 {'9'3054R:A -> '9'3055R:U: adjacent_5p upward } 0 11 {'9'3055R:U -> '9'3054R:A: adjacent_3p downward } 0 12 {'9'3054R:A -> '9'3056R:A: pairing parallel cis one_hbond Ss/Hw } 0 13 {'9'3056R:A -> '9'3054R:A: pairing parallel cis one_hbond Hw/Ss } 0 14 {'9'3055R:U -> '9'3056R:A: adjacent_5p } 0 15 {'9'3056R:A -> '9'3055R:U: adjacent_3p } 0 16 {'9'3056R:A -> '9'3057R:A: adjacent_5p inward } 0 17 {'9'3057R:A -> '9'3056R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 3 . 9 . 10 12 . 4 . . . 11 . 14 . 5 . . . 13 15 . 16 6 5 . . . . 17 . [GraphModel] [Vertices] 0 '9'3036R:C 0 1 '9'3037R:C 0 2 '9'3043R:G 0 3 '9'3044R:A 0 4 '9'3045R:A 0 5 '9'3046R:C 0 6 '9'3047R:A 0 [Edges] 0 {'9'3036R:C -> '9'3037R:C: adjacent_5p upward } 0 1 {'9'3037R:C -> '9'3036R:C: adjacent_3p downward } 0 2 {'9'3036R:C -> '9'3047R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 3 {'9'3047R:A -> '9'3036R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 4 {'9'3037R:C -> '9'3043R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'9'3043R:G -> '9'3037R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'9'3043R:G -> '9'3044R:A: adjacent_5p } 0 7 {'9'3044R:A -> '9'3043R:G: adjacent_3p } 0 8 {'9'3043R:G -> '9'3046R:C: pairing parallel trans 119 Ss/Ww } 0 9 {'9'3046R:C -> '9'3043R:G: pairing parallel trans 119 Ww/Ss } 0 10 {'9'3043R:G -> '9'3047R:A: upward } 0 11 {'9'3047R:A -> '9'3043R:G: downward } 0 12 {'9'3044R:A -> '9'3045R:A: adjacent_5p upward } 0 13 {'9'3045R:A -> '9'3044R:A: adjacent_3p downward } 0 14 {'9'3045R:A -> '9'3046R:C: adjacent_5p upward } 0 15 {'9'3046R:C -> '9'3045R:A: adjacent_3p downward } 0 16 {'9'3046R:C -> '9'3047R:A: adjacent_5p upward } 0 17 {'9'3047R:A -> '9'3046R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . 8 10 3 . . 7 . 12 . . 4 . . . 13 . 14 . 5 . . 9 . 15 . 16 6 3 . 11 . . 17 . [GraphModel] [Vertices] 0 '9'3047R:A 0 1 '9'3048R:C 0 2 '9'3032R:G 0 3 '9'3033R:U 0 4 '9'3034R:A 0 5 '9'3035R:C 0 6 '9'3036R:C 0 [Edges] 0 {'9'3032R:G -> '9'3033R:U: adjacent_5p upward } 0 1 {'9'3033R:U -> '9'3032R:G: adjacent_3p downward } 0 2 {'9'3032R:G -> '9'3048R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3048R:C -> '9'3032R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3033R:U -> '9'3034R:A: adjacent_5p } 0 5 {'9'3034R:A -> '9'3033R:U: adjacent_3p } 0 6 {'9'3033R:U -> '9'3047R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'9'3047R:A -> '9'3033R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'9'3034R:A -> '9'3035R:C: adjacent_5p upward } 0 9 {'9'3035R:C -> '9'3034R:A: adjacent_3p downward } 0 10 {'9'3035R:C -> '9'3036R:C: adjacent_5p } 0 11 {'9'3036R:C -> '9'3035R:C: adjacent_3p } 0 12 {'9'3035R:C -> '9'3048R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 13 {'9'3048R:C -> '9'3035R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 14 {'9'3036R:C -> '9'3047R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 15 {'9'3047R:A -> '9'3036R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 16 {'9'3047R:A -> '9'3048R:C: adjacent_5p upward } 0 17 {'9'3048R:C -> '9'3047R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . 7 . . 15 1 17 . 3 . . 13 . 2 . 2 . 0 . . . 3 6 . 1 . 4 . . 4 . . . 5 . 8 . 5 . 12 . . 9 . 10 6 14 . . . . 11 . [GraphModel] [Vertices] 0 '9'3048R:C 0 1 '9'3049R:G 0 2 '9'3031R:C 0 3 '9'3032R:G 0 4 '9'3033R:U 0 5 '9'3034R:A 0 6 '9'3035R:C 0 [Edges] 0 {'9'3031R:C -> '9'3032R:G: adjacent_5p upward } 0 1 {'9'3032R:G -> '9'3031R:C: adjacent_3p downward } 0 2 {'9'3031R:C -> '9'3049R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3049R:G -> '9'3031R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3032R:G -> '9'3033R:U: adjacent_5p upward } 0 5 {'9'3033R:U -> '9'3032R:G: adjacent_3p downward } 0 6 {'9'3032R:G -> '9'3048R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3048R:C -> '9'3032R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3032R:G -> '9'3049R:G: outward } 0 9 {'9'3049R:G -> '9'3032R:G: outward } 0 10 {'9'3033R:U -> '9'3034R:A: adjacent_5p } 0 11 {'9'3034R:A -> '9'3033R:U: adjacent_3p } 0 12 {'9'3034R:A -> '9'3035R:C: adjacent_5p upward } 0 13 {'9'3035R:C -> '9'3034R:A: adjacent_3p downward } 0 14 {'9'3035R:C -> '9'3048R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 15 {'9'3048R:C -> '9'3035R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 16 {'9'3048R:C -> '9'3049R:G: adjacent_5p upward } 0 17 {'9'3049R:G -> '9'3048R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . 7 . . 15 1 17 . 3 9 . . . 2 . 2 . 0 . . . 3 6 8 1 . 4 . . 4 . . . 5 . 10 . 5 . . . . 11 . 12 6 14 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A246R:A 0 1 A247R:G 0 2 A277R:C 0 3 A278R:G 0 4 A279R:A 0 5 A280R:C 0 6 A281R:G 0 [Edges] 0 {A246R:A -> A247R:G: adjacent_5p } 0 1 {A247R:G -> A246R:A: adjacent_3p } 0 2 {A246R:A -> A279R:A: upward } 0 3 {A279R:A -> A246R:A: downward } 0 4 {A246R:A -> A281R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {A281R:G -> A246R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {A247R:G -> A277R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A277R:C -> A247R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A247R:G -> A278R:G: outward } 0 9 {A278R:G -> A247R:G: outward } 0 10 {A277R:C -> A278R:G: adjacent_5p upward } 0 11 {A278R:G -> A277R:C: adjacent_3p downward } 0 12 {A278R:G -> A279R:A: adjacent_5p } 0 13 {A279R:A -> A278R:G: adjacent_3p } 0 14 {A279R:A -> A280R:C: adjacent_5p } 0 15 {A280R:C -> A279R:A: adjacent_3p } 0 16 {A280R:C -> A281R:G: adjacent_5p } 0 17 {A281R:G -> A280R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 8 . . . 2 . 7 . 10 . . . 3 . 9 11 . 12 . . 4 3 . . 13 . 14 . 5 . . . . 15 . 16 6 5 . . . . 17 . [GraphModel] [Vertices] 0 A291R:C 0 1 A292R:G 0 2 A305R:G 0 3 A306R:G 0 4 A307R:C 0 5 A308R:C 0 6 A309R:G 0 [Edges] 0 {A291R:C -> A292R:G: adjacent_5p } 0 1 {A292R:G -> A291R:C: adjacent_3p } 0 2 {A291R:C -> A309R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A309R:G -> A291R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A292R:G -> A305R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 5 {A305R:G -> A292R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 6 {A292R:G -> A308R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A308R:C -> A292R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A292R:G -> A309R:G: outward } 0 9 {A309R:G -> A292R:G: outward } 0 10 {A305R:G -> A306R:G: adjacent_5p } 0 11 {A306R:G -> A305R:G: adjacent_3p } 0 12 {A306R:G -> A307R:C: adjacent_5p upward } 0 13 {A307R:C -> A306R:G: adjacent_3p downward } 0 14 {A307R:C -> A308R:C: adjacent_5p upward } 0 15 {A308R:C -> A307R:C: adjacent_3p downward } 0 16 {A308R:C -> A309R:G: adjacent_5p upward } 0 17 {A309R:G -> A308R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 8 2 . 5 . 10 . . . 3 . . 11 . 12 . . 4 . . . 13 . 14 . 5 . 7 . . 15 . 16 6 3 9 . . . 17 . [GraphModel] [Vertices] 0 A292R:G 0 1 A293R:G 0 2 A304R:U 0 3 A305R:G 0 4 A306R:G 0 5 A307R:C 0 6 A308R:C 0 [Edges] 0 {A292R:G -> A293R:G: adjacent_5p } 0 1 {A293R:G -> A292R:G: adjacent_3p } 0 2 {A292R:G -> A305R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 3 {A305R:G -> A292R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 4 {A292R:G -> A308R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A308R:C -> A292R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A293R:G -> A304R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A304R:U -> A293R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A293R:G -> A305R:G: outward } 0 9 {A305R:G -> A293R:G: outward } 0 10 {A304R:U -> A305R:G: adjacent_5p upward } 0 11 {A305R:G -> A304R:U: adjacent_3p downward } 0 12 {A305R:G -> A306R:G: adjacent_5p } 0 13 {A306R:G -> A305R:G: adjacent_3p } 0 14 {A306R:G -> A307R:C: adjacent_5p upward } 0 15 {A307R:C -> A306R:G: adjacent_3p downward } 0 16 {A307R:C -> A308R:C: adjacent_5p upward } 0 17 {A308R:C -> A307R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 8 . . . 2 . 7 . 10 . . . 3 3 9 11 . 12 . . 4 . . . 13 . 14 . 5 . . . . 15 . 16 6 5 . . . . 17 . [GraphModel] [Vertices] 0 A389R:A 0 1 A390R:C 0 2 A371R:G 0 3 A372R:C 0 4 A373R:A 0 5 A374R:A 0 6 A375R:U 0 [Edges] 0 {A371R:G -> A372R:C: adjacent_5p upward } 0 1 {A372R:C -> A371R:G: adjacent_3p downward } 0 2 {A371R:G -> A390R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A390R:C -> A371R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A372R:C -> A373R:A: adjacent_5p } 0 5 {A373R:A -> A372R:C: adjacent_3p } 0 6 {A372R:C -> A389R:A: pairing antiparallel trans XXV Ww/Hh } 0 7 {A389R:A -> A372R:C: pairing antiparallel trans XXV Hh/Ww } 0 8 {A373R:A -> A374R:A: adjacent_5p upward } 0 9 {A374R:A -> A373R:A: adjacent_3p downward } 0 10 {A374R:A -> A375R:U: adjacent_5p upward } 0 11 {A375R:U -> A374R:A: adjacent_3p downward } 0 12 {A375R:U -> A389R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A389R:A -> A375R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A389R:A -> A390R:C: adjacent_5p upward } 0 15 {A390R:C -> A389R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . 7 . . 13 1 15 . 3 . . . . 2 . 2 . 0 . . . 3 6 . 1 . 4 . . 4 . . . 5 . 8 . 5 . . . . 9 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 A391R:G 0 1 A392R:G 0 2 A369R:C 0 3 A370R:C 0 4 A371R:G 0 5 A372R:C 0 6 A373R:A 0 [Edges] 0 {A369R:C -> A370R:C: adjacent_5p } 0 1 {A370R:C -> A369R:C: adjacent_3p } 0 2 {A369R:C -> A392R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A392R:G -> A369R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A370R:C -> A371R:G: adjacent_5p upward } 0 5 {A371R:G -> A370R:C: adjacent_3p downward } 0 6 {A370R:C -> A391R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A391R:G -> A370R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A371R:G -> A372R:C: adjacent_5p upward } 0 9 {A372R:C -> A371R:G: adjacent_3p downward } 0 10 {A371R:G -> A391R:G: outward } 0 11 {A391R:G -> A371R:G: outward } 0 12 {A372R:C -> A373R:A: adjacent_5p } 0 13 {A373R:A -> A372R:C: adjacent_3p } 0 14 {A373R:A -> A391R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 15 {A391R:G -> A373R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 16 {A391R:G -> A392R:G: adjacent_5p upward } 0 17 {A392R:G -> A391R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . 7 11 . 15 1 17 . 3 . . . . 2 . 2 . 0 . . . 3 6 . 1 . 4 . . 4 10 . . 5 . 8 . 5 . . . . 9 . 12 6 14 . . . . 13 . [GraphModel] [Vertices] 0 A686R:U 0 1 A687R:A 0 2 A700R:G 0 3 A701R:C 0 4 A702R:A 0 5 A703R:G 0 6 A704R:A 0 [Edges] 0 {A686R:U -> A687R:A: adjacent_5p } 0 1 {A687R:A -> A686R:U: adjacent_3p } 0 2 {A686R:U -> A704R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A704R:A -> A686R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A687R:A -> A700R:G: pairing parallel trans one_hbond Bs/Ss } 0 5 {A700R:G -> A687R:A: pairing parallel trans one_hbond Ss/Bs } 0 6 {A687R:A -> A701R:C: upward } 0 7 {A701R:C -> A687R:A: downward } 0 8 {A687R:A -> A703R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A703R:G -> A687R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A687R:A -> A704R:A: outward } 0 11 {A704R:A -> A687R:A: outward } 0 12 {A700R:G -> A701R:C: adjacent_5p } 0 13 {A701R:C -> A700R:G: adjacent_3p } 0 14 {A701R:C -> A702R:A: adjacent_5p } 0 15 {A702R:A -> A701R:C: adjacent_3p } 0 16 {A702R:A -> A703R:G: adjacent_5p } 0 17 {A703R:G -> A702R:A: adjacent_3p } 0 18 {A703R:G -> A704R:A: adjacent_5p } 0 19 {A704R:A -> A703R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 6 . 8 10 2 . 5 . 12 . . . 3 . 7 13 . 14 . . 4 . . . 15 . 16 . 5 . 9 . . 17 . 18 6 3 11 . . . 19 . [GraphModel] [Vertices] 0 A687R:A 0 1 A688R:G 0 2 A699R:C 0 3 A700R:G 0 4 A701R:C 0 5 A702R:A 0 6 A703R:G 0 [Edges] 0 {A687R:A -> A688R:G: adjacent_5p } 0 1 {A688R:G -> A687R:A: adjacent_3p } 0 2 {A687R:A -> A700R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {A700R:G -> A687R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {A687R:A -> A701R:C: upward } 0 5 {A701R:C -> A687R:A: downward } 0 6 {A687R:A -> A703R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A703R:G -> A687R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A688R:G -> A699R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A699R:C -> A688R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A688R:G -> A700R:G: outward } 0 11 {A700R:G -> A688R:G: outward } 0 12 {A699R:C -> A700R:G: adjacent_5p upward } 0 13 {A700R:G -> A699R:C: adjacent_3p downward } 0 14 {A700R:G -> A701R:C: adjacent_5p } 0 15 {A701R:C -> A700R:G: adjacent_3p } 0 16 {A701R:C -> A702R:A: adjacent_5p } 0 17 {A702R:A -> A701R:C: adjacent_3p } 0 18 {A702R:A -> A703R:G: adjacent_5p } 0 19 {A703R:G -> A702R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 4 . 6 1 1 . 8 10 . . . 2 . 9 . 12 . . . 3 3 11 13 . 14 . . 4 5 . . 15 . 16 . 5 . . . . 17 . 18 6 7 . . . . 19 . [GraphModel] [Vertices] 0 A802R:A 0 1 A803R:G 0 2 A776R:G 0 3 A777R:A 0 4 A778R:G 0 5 A779R:C 0 6 A780R:A 0 [Edges] 0 {A776R:G -> A777R:A: adjacent_5p } 0 1 {A777R:A -> A776R:G: adjacent_3p } 0 2 {A776R:G -> A803R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 3 {A803R:G -> A776R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 4 {A777R:A -> A778R:G: adjacent_5p upward } 0 5 {A778R:G -> A777R:A: adjacent_3p downward } 0 6 {A778R:G -> A779R:C: adjacent_5p upward } 0 7 {A779R:C -> A778R:G: adjacent_3p downward } 0 8 {A779R:C -> A780R:A: adjacent_5p upward } 0 9 {A780R:A -> A779R:C: adjacent_3p downward } 0 10 {A779R:C -> A803R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A803R:G -> A779R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A780R:A -> A802R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 13 {A802R:A -> A780R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 14 {A802R:A -> A803R:G: adjacent_5p upward } 0 15 {A803R:G -> A802R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 A804R:U 0 1 A805R:C 0 2 A774R:G 0 3 A775R:G 0 4 A776R:G 0 5 A777R:A 0 6 A778R:G 0 [Edges] 0 {A774R:G -> A775R:G: adjacent_5p upward } 0 1 {A775R:G -> A774R:G: adjacent_3p downward } 0 2 {A774R:G -> A805R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A805R:C -> A774R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A775R:G -> A776R:G: adjacent_5p upward } 0 5 {A776R:G -> A775R:G: adjacent_3p downward } 0 6 {A776R:G -> A777R:A: adjacent_5p } 0 7 {A777R:A -> A776R:G: adjacent_3p } 0 8 {A777R:A -> A778R:G: adjacent_5p upward } 0 9 {A778R:G -> A777R:A: adjacent_3p downward } 0 10 {A778R:G -> A804R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A804R:U -> A778R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A804R:U -> A805R:C: adjacent_5p } 0 13 {A805R:C -> A804R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 12 . . . . 11 1 13 . 3 . . . . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 . . . . 9 . [GraphModel] [Vertices] 0 A860R:A 0 1 A861R:G 0 2 A868R:C 0 3 A869R:G 0 4 A870R:U 0 5 A871R:U 0 6 A872R:A 0 [Edges] 0 {A860R:A -> A861R:G: adjacent_5p upward } 0 1 {A861R:G -> A860R:A: adjacent_3p downward } 0 2 {A860R:A -> A869R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A869R:G -> A860R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A860R:A -> A872R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 5 {A872R:A -> A860R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 6 {A861R:G -> A868R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A868R:C -> A861R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A868R:C -> A869R:G: adjacent_5p upward } 0 9 {A869R:G -> A868R:C: adjacent_3p downward } 0 10 {A869R:G -> A870R:U: adjacent_5p } 0 11 {A870R:U -> A869R:G: adjacent_3p } 0 12 {A870R:U -> A871R:U: adjacent_5p } 0 13 {A871R:U -> A870R:U: adjacent_3p } 0 14 {A871R:U -> A872R:A: adjacent_5p } 0 15 {A872R:A -> A871R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 3 . 9 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . [GraphModel] [Vertices] 0 A883R:C 0 1 A884R:U 0 2 A563R:A 0 3 A564R:C 0 4 A565R:U 0 5 A566R:G 0 6 A567R:G 0 [Edges] 0 {A563R:A -> A564R:C: adjacent_5p } 0 1 {A564R:C -> A563R:A: adjacent_3p } 0 2 {A563R:A -> A567R:G: outward } 0 3 {A567R:G -> A563R:A: outward } 0 4 {A563R:A -> A884R:U: pairing parallel trans XXI Ww/Ws } 0 5 {A884R:U -> A563R:A: pairing parallel trans XXI Ws/Ww } 0 6 {A564R:C -> A565R:U: adjacent_5p upward } 0 7 {A565R:U -> A564R:C: adjacent_3p downward } 0 8 {A565R:U -> A566R:G: adjacent_5p inward } 0 9 {A566R:G -> A565R:U: adjacent_3p inward } 0 10 {A566R:G -> A567R:G: adjacent_5p } 0 11 {A567R:G -> A566R:G: adjacent_3p } 0 12 {A567R:G -> A883R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A883R:C -> A567R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A883R:C -> A884R:U: adjacent_5p upward } 0 15 {A884R:U -> A883R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . [GraphModel] [Vertices] 0 A935R:A 0 1 A936R:C 0 2 A1379R:G 0 3 A1380R:U 0 4 A1381R:U 0 5 A1382R:C 0 6 A1383R:C 0 [Edges] 0 {A935R:A -> A936R:C: adjacent_5p upward } 0 1 {A936R:C -> A935R:A: adjacent_3p downward } 0 2 {A935R:A -> A1380R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1380R:U -> A935R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A935R:A -> A1383R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 5 {A1383R:C -> A935R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 6 {A936R:C -> A1379R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1379R:G -> A936R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1379R:G -> A1380R:U: adjacent_5p upward } 0 9 {A1380R:U -> A1379R:G: adjacent_3p downward } 0 10 {A1379R:G -> A1381R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A1381R:U -> A1379R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {A1380R:U -> A1381R:U: adjacent_5p } 0 13 {A1381R:U -> A1380R:U: adjacent_3p } 0 14 {A1381R:U -> A1382R:C: adjacent_5p } 0 15 {A1382R:C -> A1381R:U: adjacent_3p } 0 16 {A1382R:C -> A1383R:C: adjacent_5p } 0 17 {A1383R:C -> A1382R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . . . 2 . 7 . 8 10 . . 3 3 . 9 . 12 . . 4 . . 11 13 . 14 . 5 . . . . 15 . 16 6 5 . . . . 17 . [GraphModel] [Vertices] 0 A1057R:G 0 1 A1058R:G 0 2 A1199R:U 0 3 A1200R:C 0 4 A1201R:A 0 5 A1202R:G 0 6 A1203R:C 0 [Edges] 0 {A1057R:G -> A1058R:G: adjacent_5p upward } 0 1 {A1058R:G -> A1057R:G: adjacent_3p downward } 0 2 {A1057R:G -> A1203R:C: pairing antiparallel cis Ww/Ww } 0 3 {A1203R:C -> A1057R:G: pairing antiparallel cis Ww/Ww } 0 4 {A1058R:G -> A1199R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {A1199R:U -> A1058R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A1058R:G -> A1202R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 7 {A1202R:G -> A1058R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 8 {A1199R:U -> A1200R:C: adjacent_5p } 0 9 {A1200R:C -> A1199R:U: adjacent_3p } 0 10 {A1200R:C -> A1201R:A: adjacent_5p } 0 11 {A1201R:A -> A1200R:C: adjacent_3p } 0 12 {A1201R:A -> A1202R:G: adjacent_5p } 0 13 {A1202R:G -> A1201R:A: adjacent_3p } 0 14 {A1202R:G -> A1203R:C: adjacent_5p upward } 0 15 {A1203R:C -> A1202R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 A1058R:G 0 1 A1059R:C 0 2 A1198R:G 0 3 A1199R:U 0 4 A1200R:C 0 5 A1201R:A 0 6 A1202R:G 0 [Edges] 0 {A1058R:G -> A1059R:C: adjacent_5p upward } 0 1 {A1059R:C -> A1058R:G: adjacent_3p downward } 0 2 {A1058R:G -> A1199R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A1199R:U -> A1058R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A1058R:G -> A1202R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 5 {A1202R:G -> A1058R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 6 {A1059R:C -> A1198R:G: pairing antiparallel cis Ww/Ww } 0 7 {A1198R:G -> A1059R:C: pairing antiparallel cis Ww/Ww } 0 8 {A1198R:G -> A1199R:U: adjacent_5p upward } 0 9 {A1199R:U -> A1198R:G: adjacent_3p downward } 0 10 {A1199R:U -> A1200R:C: adjacent_5p } 0 11 {A1200R:C -> A1199R:U: adjacent_3p } 0 12 {A1200R:C -> A1201R:A: adjacent_5p } 0 13 {A1201R:A -> A1200R:C: adjacent_3p } 0 14 {A1201R:A -> A1202R:G: adjacent_5p } 0 15 {A1202R:G -> A1201R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 3 . 9 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . [GraphModel] [Vertices] 0 A1127R:G 0 1 A1128R:C 0 2 A1143R:G 0 3 A1144R:G 0 4 A1145R:C 0 5 A1146R:A 0 6 A1147R:C 0 [Edges] 0 {A1127R:G -> A1128R:C: adjacent_5p } 0 1 {A1128R:C -> A1127R:G: adjacent_3p } 0 2 {A1127R:G -> A1145R:C: pairing antiparallel cis one_hbond Ww/Ss } 0 3 {A1145R:C -> A1127R:G: pairing antiparallel cis one_hbond Ss/Ww } 0 4 {A1127R:G -> A1147R:C: pairing antiparallel cis one_hbond 120 Ss/Wh } 0 5 {A1147R:C -> A1127R:G: pairing antiparallel cis one_hbond 120 Wh/Ss } 0 6 {A1128R:C -> A1143R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 7 {A1143R:G -> A1128R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 8 {A1143R:G -> A1144R:G: adjacent_5p upward } 0 9 {A1144R:G -> A1143R:G: adjacent_3p downward } 0 10 {A1144R:G -> A1145R:C: adjacent_5p } 0 11 {A1145R:C -> A1144R:G: adjacent_3p } 0 12 {A1145R:C -> A1146R:A: adjacent_5p } 0 13 {A1146R:A -> A1145R:C: adjacent_3p } 0 14 {A1146R:A -> A1147R:C: adjacent_5p upward } 0 15 {A1147R:C -> A1146R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . 2 . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 . . 9 . 10 . . 4 3 . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . [GraphModel] [Vertices] 0 A1191R:A 0 1 A1192R:C 0 2 A1064R:G 0 3 A1065R:U 0 4 A1066R:C 0 5 A1067R:A 0 6 A1068R:G 0 [Edges] 0 {A1064R:G -> A1065R:U: adjacent_5p } 0 1 {A1065R:U -> A1064R:G: adjacent_3p } 0 2 {A1064R:G -> A1066R:C: outward } 0 3 {A1066R:C -> A1064R:G: outward } 0 4 {A1064R:G -> A1192R:C: pairing parallel cis one_hbond Wh/Hw } 0 5 {A1192R:C -> A1064R:G: pairing parallel cis one_hbond Hw/Wh } 0 6 {A1065R:U -> A1066R:C: adjacent_5p } 0 7 {A1066R:C -> A1065R:U: adjacent_3p } 0 8 {A1066R:C -> A1067R:A: adjacent_5p } 0 9 {A1067R:A -> A1066R:C: adjacent_3p } 0 10 {A1067R:A -> A1068R:G: adjacent_5p } 0 11 {A1068R:G -> A1067R:A: adjacent_3p } 0 12 {A1068R:G -> A1191R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 13 {A1191R:A -> A1068R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 14 {A1191R:A -> A1192R:C: adjacent_5p upward } 0 15 {A1192R:C -> A1191R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 2 . . 3 . . 1 . 6 . . 4 . . 3 7 . 8 . 5 . . . . 9 . 10 6 12 . . . . 11 . [GraphModel] [Vertices] 0 A1314R:C 0 1 A1315R:U 0 2 A1319R:A 0 3 A1320R:C 0 4 A1321R:C 0 5 A1322R:C 0 6 A1323R:G 0 [Edges] 0 {A1314R:C -> A1315R:U: adjacent_5p } 0 1 {A1315R:U -> A1314R:C: adjacent_3p } 0 2 {A1314R:C -> A1323R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1323R:G -> A1314R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1315R:U -> A1319R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A1319R:A -> A1315R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A1319R:A -> A1320R:C: adjacent_5p } 0 7 {A1320R:C -> A1319R:A: adjacent_3p } 0 8 {A1319R:A -> A1323R:G: upward } 0 9 {A1323R:G -> A1319R:A: downward } 0 10 {A1320R:C -> A1321R:C: adjacent_5p upward } 0 11 {A1321R:C -> A1320R:C: adjacent_3p downward } 0 12 {A1321R:C -> A1322R:C: adjacent_5p inward } 0 13 {A1322R:C -> A1321R:C: adjacent_3p inward } 0 14 {A1322R:C -> A1323R:G: adjacent_5p } 0 15 {A1323R:G -> A1322R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . 8 3 . . 7 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 3 . 9 . . 15 . [GraphModel] [Vertices] 0 A1459R:C 0 1 A1460R:A 0 2 A1441R:G 0 3 A1442R:G 0 4 A1443R:G 0 5 A1446R:A 0 6 A1447R:G 0 [Edges] 0 {A1441R:G -> A1442R:G: adjacent_5p } 0 1 {A1442R:G -> A1441R:G: adjacent_3p } 0 2 {A1441R:G -> A1460R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A1460R:A -> A1441R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A1442R:G -> A1443R:G: adjacent_5p } 0 5 {A1443R:G -> A1442R:G: adjacent_3p } 0 6 {A1443R:G -> A1446R:A: adjacent_5p } 0 7 {A1446R:A -> A1443R:G: adjacent_3p } 0 8 {A1446R:A -> A1447R:G: adjacent_5p } 0 9 {A1447R:G -> A1446R:A: adjacent_3p } 0 10 {A1447R:G -> A1459R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1459R:C -> A1447R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1447R:G -> A1460R:A: outward } 0 13 {A1460R:A -> A1447R:G: outward } 0 14 {A1459R:C -> A1460R:A: adjacent_5p } 0 15 {A1460R:A -> A1459R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 11 1 15 . 3 . . . 13 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . . . . 7 . 8 6 10 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A16R:A 0 3 A17R:C 0 4 A18R:U 0 5 A19R:U 0 6 A20R:A 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A20R:A: pairing parallel trans one_hbond Ss/Ww } 0 5 {A20R:A -> A4R:G: pairing parallel trans one_hbond Ww/Ss } 0 6 {A5R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A16R:A -> A17R:C: adjacent_5p upward } 0 9 {A17R:C -> A16R:A: adjacent_3p downward } 0 10 {A17R:C -> A18R:U: adjacent_5p } 0 11 {A18R:U -> A17R:C: adjacent_3p } 0 12 {A18R:U -> A19R:U: adjacent_5p } 0 13 {A19R:U -> A18R:U: adjacent_3p } 0 14 {A19R:U -> A20R:A: adjacent_5p } 0 15 {A20R:A -> A19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . 2 . . 4 1 1 . 6 . . . . 2 . 7 . 8 . . . 3 3 . 9 . 10 . . 4 . . . 11 . 12 . 5 . . . . 13 . 14 6 5 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:C 0 2 A34R:G 0 3 A35R:G 0 4 A36R:G 0 5 A37R:A 0 6 A38R:A 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p } 0 1 {A9R:C -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A38R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A38R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A34R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A34R:G -> A35R:G: adjacent_5p upward } 0 7 {A35R:G -> A34R:G: adjacent_3p downward } 0 8 {A35R:G -> A36R:G: adjacent_5p } 0 9 {A36R:G -> A35R:G: adjacent_3p } 0 10 {A36R:G -> A37R:A: adjacent_5p } 0 11 {A37R:A -> A36R:G: adjacent_3p } 0 12 {A37R:A -> A38R:A: adjacent_5p upward } 0 13 {A38R:A -> A37R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A223R:G 0 1 A224R:U 0 2 A194R:A 0 3 A195R:A 0 4 A196R:C 0 5 A197R:C 0 6 A198R:C 0 [Edges] 0 {A194R:A -> A195R:A: adjacent_5p } 0 1 {A195R:A -> A194R:A: adjacent_3p } 0 2 {A194R:A -> A198R:C: upward } 0 3 {A198R:C -> A194R:A: downward } 0 4 {A194R:A -> A224R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 5 {A224R:U -> A194R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 6 {A195R:A -> A196R:C: adjacent_5p } 0 7 {A196R:C -> A195R:A: adjacent_3p } 0 8 {A196R:C -> A197R:C: adjacent_5p outward } 0 9 {A197R:C -> A196R:C: adjacent_3p outward } 0 10 {A197R:C -> A198R:C: adjacent_5p } 0 11 {A198R:C -> A197R:C: adjacent_3p } 0 12 {A198R:C -> A223R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A223R:G -> A198R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A223R:G -> A224R:U: adjacent_5p upward } 0 15 {A224R:U -> A223R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A32R:G 0 3 A33R:G 0 4 A34R:G 0 5 A35R:A 0 6 A36R:A 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A36R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A32R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A32R:G -> A33R:G: adjacent_5p upward } 0 7 {A33R:G -> A32R:G: adjacent_3p downward } 0 8 {A33R:G -> A34R:G: adjacent_5p } 0 9 {A34R:G -> A33R:G: adjacent_3p } 0 10 {A34R:G -> A35R:A: adjacent_5p upward } 0 11 {A35R:A -> A34R:G: adjacent_3p downward } 0 12 {A35R:A -> A36R:A: adjacent_5p upward } 0 13 {A36R:A -> A35R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 . . . 3 . . 7 . 8 . . 4 . . . 9 . 10 . 5 . . . . 11 . 12 6 3 . . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B922R:A 0 1 B923R:G 0 2 B909R:C 0 3 B910R:G 0 4 B911R:C 0 5 B912R:C 0 6 B913R:A 0 [Edges] 0 {B909R:C -> B910R:G: adjacent_5p } 0 1 {B910R:G -> B909R:C: adjacent_3p } 0 2 {B909R:C -> B923R:G: pairing parallel trans one_hbond 121 Hw/Hw } 0 3 {B923R:G -> B909R:C: pairing parallel trans one_hbond 121 Hw/Hw } 0 4 {B910R:G -> B911R:C: adjacent_5p upward } 0 5 {B911R:C -> B910R:G: adjacent_3p downward } 0 6 {B911R:C -> B912R:C: adjacent_5p upward } 0 7 {B912R:C -> B911R:C: adjacent_3p downward } 0 8 {B912R:C -> B913R:A: adjacent_5p upward } 0 9 {B913R:A -> B912R:C: adjacent_3p downward } 0 10 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B913R:A -> B922R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {B922R:A -> B913R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {B922R:A -> B923R:G: adjacent_5p upward } 0 15 {B923R:G -> B922R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:G 0 2 A29R:G 0 3 A30R:U 0 4 A31R:G 0 5 A32R:A 0 6 A33R:A 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:A: adjacent_3p } 0 2 {A8R:A -> A33R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 3 {A33R:A -> A8R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 4 {A9R:G -> A29R:G: pairing parallel trans one_hbond Wh/Ww } 0 5 {A29R:G -> A9R:G: pairing parallel trans one_hbond Ww/Wh } 0 6 {A29R:G -> A30R:U: adjacent_5p } 0 7 {A30R:U -> A29R:G: adjacent_3p } 0 8 {A29R:G -> A31R:G: outward } 0 9 {A31R:G -> A29R:G: outward } 0 10 {A30R:U -> A31R:G: adjacent_5p } 0 11 {A31R:G -> A30R:U: adjacent_3p } 0 12 {A31R:G -> A32R:A: adjacent_5p upward } 0 13 {A32R:A -> A31R:G: adjacent_3p downward } 0 14 {A32R:A -> A33R:A: adjacent_5p } 0 15 {A33R:A -> A32R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . . . 2 . 5 . 6 8 . . 3 . . 7 . 10 . . 4 . . 9 11 . 12 . 5 . . . . 13 . 14 6 3 . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 C22R:G 0 1 C23R:A 0 2 C9R:A 0 3 C10R:G 0 4 C11R:C 0 5 C12R:U 0 6 C13R:C 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C23R:A: pairing parallel trans II Hh/Hh } 0 3 {C23R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 4 {C10R:G -> C11R:C: adjacent_5p upward } 0 5 {C11R:C -> C10R:G: adjacent_3p downward } 0 6 {C11R:C -> C12R:U: adjacent_5p upward } 0 7 {C12R:U -> C11R:C: adjacent_3p downward } 0 8 {C12R:U -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:U: adjacent_3p downward } 0 10 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C13R:C -> C22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C22R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C22R:G -> C23R:A: adjacent_5p upward } 0 15 {C23R:A -> C22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . [GraphModel] [Vertices] 0 D22R:G 0 1 D23R:A 0 2 D9R:A 0 3 D10R:G 0 4 D11R:C 0 5 D12R:U 0 6 D13R:C 0 [Edges] 0 {D9R:A -> D10R:G: adjacent_5p } 0 1 {D10R:G -> D9R:A: adjacent_3p } 0 2 {D9R:A -> D23R:A: pairing parallel trans II Hh/Hh } 0 3 {D23R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 4 {D10R:G -> D11R:C: adjacent_5p upward } 0 5 {D11R:C -> D10R:G: adjacent_3p downward } 0 6 {D11R:C -> D12R:U: adjacent_5p upward } 0 7 {D12R:U -> D11R:C: adjacent_3p downward } 0 8 {D12R:U -> D13R:C: adjacent_5p upward } 0 9 {D13R:C -> D12R:U: adjacent_3p downward } 0 10 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D22R:G -> D23R:A: adjacent_5p upward } 0 15 {D23R:A -> D22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B3R:G 0 1 B4R:U 0 2 A10R:G 0 3 A11R:C 0 4 A12R:G 0 5 A13R:A 0 6 A14R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p } 0 1 {A11R:C -> A10R:G: adjacent_3p } 0 2 {A10R:G -> A12R:G: pairing parallel cis one_hbond 113 Ws/Hw } 0 3 {A12R:G -> A10R:G: pairing parallel cis one_hbond 113 Hw/Ws } 0 4 {A10R:G -> B4R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 5 {B4R:U -> A10R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 6 {A11R:C -> A12R:G: adjacent_5p } 0 7 {A12R:G -> A11R:C: adjacent_3p } 0 8 {A12R:G -> A13R:A: adjacent_5p upward } 0 9 {A13R:A -> A12R:G: adjacent_3p downward } 0 10 {A13R:A -> A14R:C: adjacent_5p upward } 0 11 {A14R:C -> A13R:A: adjacent_3p downward } 0 12 {A13R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B4R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A14R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B3R:G -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 16 . . . . 15 1 17 . 5 . . 13 . 2 . 4 . 0 2 . . 3 . . 1 . 6 . . 4 . . 3 7 . 8 . 5 . 12 . . 9 . 10 6 14 . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 B33R:G 0 3 B34R:C 0 4 B35R:G 0 5 B36R:A 0 6 B37R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B37R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> B33R:G: pairing antiparallel trans 91 Bh/Ww } 0 5 {B33R:G -> A4R:U: pairing antiparallel trans 91 Ww/Bh } 0 6 {A4R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B36R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B33R:G -> B34R:C: adjacent_5p } 0 9 {B34R:C -> B33R:G: adjacent_3p } 0 10 {B34R:C -> B35R:G: adjacent_5p upward } 0 11 {B35R:G -> B34R:C: adjacent_3p downward } 0 12 {B35R:G -> B36R:A: adjacent_5p upward } 0 13 {B36R:A -> B35R:G: adjacent_3p downward } 0 14 {B36R:A -> B37R:C: adjacent_5p upward } 0 15 {B37R:C -> B36R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 0 . . . . 2 1 1 . 4 . . 6 . 2 . 5 . 8 . . . 3 . . 9 . 10 . . 4 . . . 11 . 12 . 5 . 7 . . 13 . 14 6 3 . . . . 15 . [GraphModel] [Vertices] 0 B3R:G 0 1 B4R:U 0 2 A33R:G 0 3 A34R:C 0 4 A35R:G 0 5 A36R:A 0 6 A37R:C 0 [Edges] 0 {A33R:G -> A34R:C: adjacent_5p } 0 1 {A34R:C -> A33R:G: adjacent_3p } 0 2 {A33R:G -> B4R:U: pairing antiparallel trans 91 Ww/Bh } 0 3 {B4R:U -> A33R:G: pairing antiparallel trans 91 Bh/Ww } 0 4 {A34R:C -> A35R:G: adjacent_5p upward } 0 5 {A35R:G -> A34R:C: adjacent_3p downward } 0 6 {A35R:G -> A36R:A: adjacent_5p upward } 0 7 {A36R:A -> A35R:G: adjacent_3p downward } 0 8 {A36R:A -> A37R:C: adjacent_5p upward } 0 9 {A37R:C -> A36R:A: adjacent_3p downward } 0 10 {A36R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B4R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A37R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B3R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B3R:G -> B4R:U: adjacent_5p upward } 0 15 {B4R:U -> B3R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 R22R:G 0 1 R23R:A 0 2 R9R:A 0 3 R10R:G 0 4 R11R:C 0 5 R12R:U 0 6 R13R:C 0 [Edges] 0 {R9R:A -> R10R:G: adjacent_5p } 0 1 {R10R:G -> R9R:A: adjacent_3p } 0 2 {R9R:A -> R23R:A: pairing parallel trans one_hbond 35 Wh/Hh } 0 3 {R23R:A -> R9R:A: pairing parallel trans one_hbond 35 Hh/Wh } 0 4 {R10R:G -> R11R:C: adjacent_5p upward } 0 5 {R11R:C -> R10R:G: adjacent_3p downward } 0 6 {R11R:C -> R12R:U: adjacent_5p upward } 0 7 {R12R:U -> R11R:C: adjacent_3p downward } 0 8 {R12R:U -> R13R:C: adjacent_5p upward } 0 9 {R13R:C -> R12R:U: adjacent_3p downward } 0 10 {R12R:U -> R23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {R23R:A -> R12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {R13R:C -> R22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R22R:G -> R13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R22R:G -> R23R:A: adjacent_5p upward } 0 15 {R23R:A -> R22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 3 . . 11 . 2 . 2 . 0 . . . 3 . . 1 . 4 . . 4 . . . 5 . 6 . 5 . 10 . . 7 . 8 6 12 . . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B39R:C 0 1 B40R:U 0 2 A22R:A 0 3 A23R:U 0 4 A24R:C 0 5 A25R:U 0 6 A26R:G 0 [Edges] 0 {A22R:A -> A23R:U: adjacent_5p } 0 1 {A23R:U -> A22R:A: adjacent_3p } 0 2 {A22R:A -> A26R:G: upward } 0 3 {A26R:G -> A22R:A: downward } 0 4 {A22R:A -> B40R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B40R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A23R:U -> A24R:C: adjacent_5p upward } 0 7 {A24R:C -> A23R:U: adjacent_3p downward } 0 8 {A24R:C -> A25R:U: adjacent_5p } 0 9 {A25R:U -> A24R:C: adjacent_3p } 0 10 {A25R:U -> A26R:G: adjacent_5p } 0 11 {A26R:G -> A25R:U: adjacent_3p } 0 12 {A26R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B39R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B39R:C -> B40R:U: adjacent_5p } 0 15 {B40R:U -> B39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 0 . 14 . . . . 13 1 15 . 5 . . . . 2 . 4 . 0 . . 2 3 . . 1 . 6 . . 4 . . . 7 . 8 . 5 . . . . 9 . 10 6 12 . 3 . . 11 .